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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944893
Clone id YMU02A01NGRL0007_I09
Library
Length 190
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_I09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
AGTGAGAAGAGGAAAAACCTAGAGGCTCTCAAAGCAAAAGAGAGGAAGGTCACTGTTGAC
AAGGAATTTGCAACCATGCAGCTTGTTGAGAAGAAAAGTGAAGAAGAGAACTTCTTGAAA
CTGGGTGGTGCTGATAAGGGCAAGAAGAAAGAGATAGCAGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P38992
Definition sp|P38992|SUR2_YEAST Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae
Align length 36
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944893|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_I09, 5'
         (160 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38992|SUR2_YEAST Sphingolipid C4-hydroxylase SUR2 OS=Sacchar...    29   6.4  

>sp|P38992|SUR2_YEAST Sphingolipid C4-hydroxylase SUR2
           OS=Saccharomyces cerevisiae GN=SUR2 PE=1 SV=1
          Length = 349

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 13  KNLEALKAKERKVTVD--KEFATMQLVEKKSEEENF 114
           K  E  + K+R+VT+D  KEF   + +EKK + +NF
Sbjct: 300 KGFEEYQKKQRRVTIDKYKEFLQERELEKKEKLKNF 335
tr_hit_id A9RQU5
Definition tr|A9RQU5|A9RQU5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 36
Score (bit) 47.4
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944893|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_I09, 5'
         (160 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RQU5|A9RQU5_PHYPA Predicted protein OS=Physcomitrella paten...    47   4e-04
tr|A9S3N5|A9S3N5_PHYPA Predicted protein OS=Physcomitrella paten...    47   5e-04
tr|A9U338|A9U338_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|Q711N4|Q711N4_BETVU Salt tolerance protein 1 OS=Beta vulgaris...    45   0.001
tr|Q6Q4C0|Q6Q4C0_TAGMI Thermoinhibition-associated THB-4 protein...    45   0.002
tr|Q711N3|Q711N3_BETVU Salt tolerance protein 2 OS=Beta vulgaris...    44   0.003
tr|Q9SQ55|Q9SQ55_SPIOL Nuclear RNA binding protein A OS=Spinacia...    44   0.005
tr|B0FSK7|B0FSK7_9MAGN Putative nuclear RNA binding protein (Fra...    43   0.009
tr|Q6L561|Q6L561_ORYSJ Os05g0589600 protein OS=Oryza sativa subs...    42   0.020
tr|A2Y828|A2Y828_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.020
tr|Q38M48|Q38M48_SOLTU Nuclear RNA binding protein-like OS=Solan...    41   0.026
tr|A9SND7|A9SND7_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.026
tr|A5AUY3|A5AUY3_VITVI Putative uncharacterized protein OS=Vitis...    41   0.026
tr|Q9SQ56|Q9SQ56_TOBAC Nuclear RNA binding protein (Fragment) OS...    41   0.034
tr|A7PK93|A7PK93_VITVI Chromosome chr15 scaffold_19, whole genom...    40   0.058
tr|A9S3N4|A9S3N4_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.076
tr|B8A1Y3|B8A1Y3_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.13 
tr|B6T8U0|B6T8U0_MAIZE Plasminogen activator inhibitor 1 RNA-bin...    39   0.13 
tr|B4FR90|B4FR90_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.13 
tr|A9PDH3|A9PDH3_POPTR Putative uncharacterized protein OS=Popul...    39   0.13 
tr|Q9SQ53|Q9SQ53_SPIOL Nuclear RNA binding protein C (Fragment) ...    38   0.22 
tr|Q8W0D1|Q8W0D1_ORYSJ Putative nuclear RNA binding protein A (O...    38   0.22 
tr|Q5ZBA9|Q5ZBA9_ORYSJ Putative nuclear RNA binding protein (Put...    38   0.22 
tr|A6N1L8|A6N1L8_ORYSI Salt tolerance protein 2 (Fragment) OS=Or...    38   0.22 
tr|A6N0I9|A6N0I9_ORYSI Nuclear antigen (Fragment) OS=Oryza sativ...    38   0.22 
tr|A2ZXC9|A2ZXC9_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.22 
tr|A2WUK8|A2WUK8_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.22 
tr|A2WSA8|A2WSA8_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.22 
tr|Q9SQ54|Q9SQ54_SPIOL Nuclear RNA binding protein B (Fragment) ...    38   0.29 
tr|B6T4Q3|B6T4Q3_MAIZE Plasminogen activator inhibitor 1 RNA-bin...    38   0.29 

>tr|A9RQU5|A9RQU5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_55884 PE=4 SV=1
          Length = 393

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 24/36 (66%), Positives = 26/36 (72%)
 Frame = +1

Query: 4   EKRKNLEALKAKERKVTVDKEFATMQLVEKKSEEEN 111
           EKRK LEA KA ERKV +DK F  MQLVE K  EE+
Sbjct: 245 EKRKALEATKASERKVEMDKAFEKMQLVENKKREED 280


>tr|A9S3N5|A9S3N5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162649 PE=4 SV=1
          Length = 343

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 24/36 (66%), Positives = 25/36 (69%)
 Frame = +1

Query: 4   EKRKNLEALKAKERKVTVDKEFATMQLVEKKSEEEN 111
           EKRK LEA KA ERKV VDK F  MQLV  K  EE+
Sbjct: 201 EKRKTLEASKASERKVEVDKAFEKMQLVSNKKREED 236


>tr|A9U338|A9U338_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_110667 PE=4 SV=1
          Length = 403

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 23/37 (62%), Positives = 26/37 (70%)
 Frame = +1

Query: 1   SEKRKNLEALKAKERKVTVDKEFATMQLVEKKSEEEN 111
           +EKRK LE  KA ERKV  DKEF  MQLV+ K  EE+
Sbjct: 259 AEKRKALEDAKAAERKVEADKEFEKMQLVDNKKREED 295


>tr|Q711N4|Q711N4_BETVU Salt tolerance protein 1 OS=Beta vulgaris
           GN=sato1 PE=2 SV=1
          Length = 356

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 1/37 (2%)
 Frame = +1

Query: 4   EKRKNLEALKAKERKVTVDKEFATM-QLVEKKSEEEN 111
           EKRK L ALKA+ERKV VDK+F +M QL+ KK +E++
Sbjct: 239 EKRKALSALKAEERKVEVDKDFESMQQLINKKKDEDS 275


>tr|Q6Q4C0|Q6Q4C0_TAGMI Thermoinhibition-associated THB-4 protein
           (Fragment) OS=Tagetes minuta PE=2 SV=1
          Length = 115

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 25/38 (65%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +1

Query: 4   EKRKNLEALKAKERKVTVDKEFATM-QLVEKKSEEENF 114
           EKRK LE LK +ERKV VDKE A+M QL  KKS +E F
Sbjct: 28  EKRKALETLKTEERKVEVDKELASMQQLSNKKSNDEIF 65


>tr|Q711N3|Q711N3_BETVU Salt tolerance protein 2 OS=Beta vulgaris
           GN=sato2 PE=2 SV=1
          Length = 356

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = +1

Query: 4   EKRKNLEALKAKERKVTVDKEFATMQLVEKKSEEE 108
           EKRK L +LK +ERKV +DKEF +MQLV KK  ++
Sbjct: 240 EKRKALLSLKGEERKVDLDKEFESMQLVSKKKNDD 274


>tr|Q9SQ55|Q9SQ55_SPIOL Nuclear RNA binding protein A OS=Spinacia
           oleracea GN=RggA PE=2 SV=1
          Length = 356

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +1

Query: 4   EKRKNLEALKAKERKVTVDKEFATMQLVEKKSEEE 108
           EKRK L ALKA+ERKV VDK+F +MQL  KK  ++
Sbjct: 235 EKRKALLALKAEERKVDVDKDFESMQLKTKKKVDD 269


>tr|B0FSK7|B0FSK7_9MAGN Putative nuclear RNA binding protein
           (Fragment) OS=Adonis aestivalis var. palaestina PE=2
           SV=1
          Length = 154

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = +1

Query: 4   EKRKNLEALKAKERKVTVDKEFATM-QLVEKKSEEENF 114
           EKRK L ALK +ERKVTVDK+F +M QL  KK+ +E F
Sbjct: 29  EKRKALLALKVEERKVTVDKDFESMQQLSGKKNNDEIF 66


>tr|Q6L561|Q6L561_ORYSJ Os05g0589600 protein OS=Oryza sativa subsp.
           japonica GN=OJ1115_D04.10 PE=4 SV=1
          Length = 383

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +1

Query: 4   EKRKNLEALKAKERKVTVDKEFATM-QLVEKKSEEENF 114
           EKRK L ALKA+ERKV VDKE   M QL  KK+ EE F
Sbjct: 258 EKRKALLALKAEERKVEVDKELQAMQQLSVKKANEEVF 295


>tr|A2Y828|A2Y828_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21200 PE=4 SV=1
          Length = 383

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +1

Query: 4   EKRKNLEALKAKERKVTVDKEFATM-QLVEKKSEEENF 114
           EKRK L ALKA+ERKV VDKE   M QL  KK+ EE F
Sbjct: 258 EKRKALLALKAEERKVEVDKELQAMQQLSVKKANEEVF 295