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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944933
Clone id YMU02A01NGRL0007_K09
Library
Length 492
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_K09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ATCGTCACGGGTAGCAAGCGATGGCAATTCTATGTGGAGGGAGCAAGTGGAGCTGGTCTC
TCGCGCAGCTACCCATTCAGAAGGCAGGAGCGAAAGCAGACACTGGTAGGCTCTTCGCGC
CTCTGCTCACTCAACAGCGCTTCTTCTCCCCTCTGCATTGCACGGATCCCTTTAAATCAT
CACCAGTCTCTTCTTCCCAACCCCGCACCACCGTAGCAGGAGATTCGGAGGAAGAGAAAG
AGGAGGAAGCGCCAGAATCTCCTTTTGAAGTATCGCTGGGAAAGTTTTTGCGAGGCCGAT
TGTGGTTTCTCATCCTCGTTTTCCTGCTCACTGCCTGTGGAGCTGGTTACAGTTATCTTG
TCTTCACCTTTGCGGATGTTGCCGATGTGCCCATTTTGGGAGTGACTCGATGGTGATTTG
CGTTGGCCATCTCAGAGAGCTCGCTTACTCTGTTGTATATCACATGTAAATTTGAACCTG
ACGCCTTTTCTC
■■Homology search results ■■ -
sp_hit_id Q5T2S8
Definition sp|Q5T2S8|ARMC4_HUMAN Armadillo repeat-containing protein 4 OS=Homo sapiens
Align length 70
Score (bit) 33.9
E-value 0.41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944933|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_K09, 5'
         (492 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5T2S8|ARMC4_HUMAN Armadillo repeat-containing protein 4 OS=H...    34   0.41 
sp|O28703|Y1569_ARCFU Uncharacterized protein AF_1569 OS=Archaeo...    32   1.2  
sp|Q2YDP3|NC2A_BOVIN Dr1-associated corepressor OS=Bos taurus GN...    32   1.6  
sp|Q4KAD4|DNAE2_PSEF5 Error-prone DNA polymerase OS=Pseudomonas ...    32   2.0  
sp|Q66T72|PSIP1_FELCA PC4 and SFRS1-interacting protein OS=Felis...    30   5.9  
sp|Q86A12|SKY1_DICDI Probable serine/threonine-protein kinase sk...    30   7.8  
sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium ...    30   7.8  
sp|Q59975|AROA_SYNY3 3-phosphoshikimate 1-carboxyvinyltransferas...    30   7.8  

>sp|Q5T2S8|ARMC4_HUMAN Armadillo repeat-containing protein 4 OS=Homo
           sapiens GN=ARMC4 PE=2 SV=1
          Length = 1044

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 461 DIQQSKRAL*DGQRKSPSSHSQNGHIGNIRKGEDKITVTSSTGSEQENEDEKP----QSA 294
           +IQ+ K     G+ + P     +G    +RK  +KI  T S  S +  EDE+P    Q A
Sbjct: 387 EIQEDKHT---GKLEKPRPSVSHGRAQLLRKSAEKIEETVSDSSSESEEDEEPPDHRQEA 443

Query: 293 SQKLSQRYFK 264
           S  L   Y++
Sbjct: 444 SADLPSEYWQ 453


>sp|O28703|Y1569_ARCFU Uncharacterized protein AF_1569
           OS=Archaeoglobus fulgidus GN=AF_1569 PE=4 SV=1
          Length = 259

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 306 FLILVFLLTACGAGYSYLVFTFADVADVPILGVTRW*FALAISESSLTLLYIT 464
           FLI  F +T  G+   +  F F DV    + G+    FAL +S+ +L L Y+T
Sbjct: 126 FLIYRFAITLFGSTICFYRFVFGDVLKSIVAGILT--FALFLSQRALNLEYVT 176


>sp|Q2YDP3|NC2A_BOVIN Dr1-associated corepressor OS=Bos taurus
           GN=DRAP1 PE=2 SV=1
          Length = 205

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 21/46 (45%), Positives = 28/46 (60%)
 Frame = -2

Query: 422 RKSPSSHSQNGHIGNIRKGEDKITVTSSTGSEQENEDEKPQSASQK 285
           RKS SS  +NG +G+  KG+DK    S T SEQE+E E   S  ++
Sbjct: 112 RKSGSSGRKNGGMGS--KGKDK--KLSGTDSEQEDESEDTDSDGEE 153


>sp|Q4KAD4|DNAE2_PSEF5 Error-prone DNA polymerase OS=Pseudomonas
           fluorescens (strain Pf-5 / ATCC BAA-477) GN=dnaE2 PE=3
           SV=1
          Length = 1034

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 3   RHG*QAMAILCGGSKWSWSLAQLPIQKAGA 92
           RHG Q +A+  G S W  SL  +P+Q A A
Sbjct: 763 RHGLQVLAVDVGASDWDCSLEPIPVQPARA 792


>sp|Q66T72|PSIP1_FELCA PC4 and SFRS1-interacting protein OS=Felis
           silvestris catus GN=PSIP1 PE=1 SV=1
          Length = 530

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 431 DGQRKSPSSHSQNGHIGNIRKGEDKITVTSSTGSEQENEDEKPQ 300
           D  RK P        + + RK   K  VTS++ SE+E +D++ +
Sbjct: 242 DKPRKEPDKKEGKKEVESKRKNSAKTGVTSTSDSEEEGDDQESE 285


>sp|Q86A12|SKY1_DICDI Probable serine/threonine-protein kinase sky1
           OS=Dictyostelium discoideum GN=sky1 PE=3 SV=1
          Length = 656

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 428 GQRKSPSSHSQNGHIGNIRKGEDKITVTSSTGSEQENEDEKPQSASQK 285
           G +KS +    N    NI+K ++K +V       +EN D K  ++S++
Sbjct: 378 GNKKSSNRDRDNNKNKNIKKDDNKSSVNEINNISKENTDNKDLNSSEE 425


>sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium
           discoideum GN=kif4 PE=2 SV=1
          Length = 1922

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -2

Query: 401 SQNGHIGNIRKGEDKITVTSSTGSEQENEDEKPQSASQKLSQ 276
           S+N  I  I+  E+ I+ +SS  S +E++D+K    +  ++Q
Sbjct: 445 SENQKIKKIKNSENNISSSSSNSSGEEDDDDKDDENNYSINQ 486


>sp|Q59975|AROA_SYNY3 3-phosphoshikimate 1-carboxyvinyltransferase
           OS=Synechocystis sp. (strain PCC 6803) GN=aroA PE=3 SV=1
          Length = 447

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 72  PIQKAGAK--ADTGRLFAPLLTQQRFFSPLHCTDPFKSSPVSS 194
           P+Q+ GAK  A +   FAPL  Q     P+H   P  S+ V S
Sbjct: 146 PLQQMGAKIWARSNGKFAPLAVQGSQLKPIHYHSPIASAQVKS 188
tr_hit_id A5B801
Definition tr|A5B801|A5B801_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 63
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944933|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_K09, 5'
         (492 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B801|A5B801_VITVI Putative uncharacterized protein OS=Vitis...    35   1.9  
tr|A4HNE0|A4HNE0_LEIBR Putative uncharacterized protein OS=Leish...    34   4.2  
tr|Q9NW14|Q9NW14_HUMAN cDNA FLJ10376 fis, clone NT2RM2001982 OS=...    34   4.2  
tr|Q5T2S9|Q5T2S9_HUMAN Novel protein (Fragment) OS=Homo sapiens ...    34   4.2  
tr|B7Z7Y0|B7Z7Y0_HUMAN cDNA FLJ52368, highly similar to Armadill...    34   4.2  
tr|B7Z7R7|B7Z7R7_HUMAN cDNA FLJ52363, highly similar to Armadill...    34   4.2  
tr|B7Z7A1|B7Z7A1_HUMAN cDNA FLJ52288, highly similar to Armadill...    34   4.2  
tr|A8K906|A8K906_HUMAN cDNA FLJ75375, highly similar to Homo sap...    34   4.2  
tr|B6WXK2|B6WXK2_9DELT Putative uncharacterized protein OS=Desul...    33   7.1  
tr|P90760|P90760_CAEEL Protein C27A7.7, partially confirmed by t...    33   7.1  
tr|A0BF07|A0BF07_PARTE Chromosome undetermined scaffold_103, who...    33   7.1  
tr|Q5B6K9|Q5B6K9_EMENI Putative uncharacterized protein OS=Emeri...    33   7.1  
tr|B4IZL6|B4IZL6_DROGR GH17063 OS=Drosophila grimshawi GN=GH1706...    33   9.3  
tr|A5DJS2|A5DJS2_PICGU Putative uncharacterized protein OS=Pichi...    33   9.3  

>tr|A5B801|A5B801_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_022760 PE=4 SV=1
          Length = 99

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
 Frame = +3

Query: 51  SWSLAQLPIQK---AGAKADTGRLFAPLLTQQRFFSPLHCTDPFKSSPVSSS---QPRTT 212
           +WSL +LPI+K     A+A   R    L+T + F    H  +P K+SP S++   QP T 
Sbjct: 13  TWSLIELPIEKNRGVLAEAAFQRRLCELITARNFADFQHLVEPGKASPTSNTAGCQPITV 72

Query: 213 VAG 221
             G
Sbjct: 73  ADG 75


>tr|A4HNE0|A4HNE0_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM34_V2.4720 PE=4 SV=1
          Length = 148

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 299 IVVSHPRFPAHCLWSWLQLSCLHLCGCCRCAHFGSDSMV-ICVGHLR 436
           I+VS   F   CL S + L+ +H+CGC     + S +MV + +G +R
Sbjct: 62  IMVSAATFACSCLRSLIVLTLVHMCGCSTLYQYQSAAMVAVVIGTMR 108


>tr|Q9NW14|Q9NW14_HUMAN cDNA FLJ10376 fis, clone NT2RM2001982
           OS=Homo sapiens PE=2 SV=1
          Length = 352

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 461 DIQQSKRAL*DGQRKSPSSHSQNGHIGNIRKGEDKITVTSSTGSEQENEDEKP----QSA 294
           +IQ+ K     G+ + P     +G    +RK  +KI  T S  S +  EDE+P    Q A
Sbjct: 244 EIQEDKHT---GKLEKPRPSVSHGRAQLLRKSAEKIEETVSDSSSESEEDEEPPDHRQEA 300

Query: 293 SQKLSQRYFK 264
           S  L   Y++
Sbjct: 301 SADLPSEYWQ 310


>tr|Q5T2S9|Q5T2S9_HUMAN Novel protein (Fragment) OS=Homo sapiens
           GN=RP11-691I13.1 PE=2 SV=1
          Length = 389

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 461 DIQQSKRAL*DGQRKSPSSHSQNGHIGNIRKGEDKITVTSSTGSEQENEDEKP----QSA 294
           +IQ+ K     G+ + P     +G    +RK  +KI  T S  S +  EDE+P    Q A
Sbjct: 281 EIQEDKHT---GKLEKPRPSVSHGRAQLLRKSAEKIEETVSDSSSESEEDEEPPDHRQEA 337

Query: 293 SQKLSQRYFK 264
           S  L   Y++
Sbjct: 338 SADLPSEYWQ 347


>tr|B7Z7Y0|B7Z7Y0_HUMAN cDNA FLJ52368, highly similar to Armadillo
           repeat-containing protein 4 OS=Homo sapiens PE=2 SV=1
          Length = 736

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 461 DIQQSKRAL*DGQRKSPSSHSQNGHIGNIRKGEDKITVTSSTGSEQENEDEKP----QSA 294
           +IQ+ K     G+ + P     +G    +RK  +KI  T S  S +  EDE+P    Q A
Sbjct: 79  EIQEDKHT---GKLEKPRPSVSHGRAQLLRKSAEKIEETVSDSSSESEEDEEPPDHRQEA 135

Query: 293 SQKLSQRYFK 264
           S  L   Y++
Sbjct: 136 SADLPSEYWQ 145


>tr|B7Z7R7|B7Z7R7_HUMAN cDNA FLJ52363, highly similar to Armadillo
           repeat-containing protein 4 OS=Homo sapiens PE=2 SV=1
          Length = 705

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 461 DIQQSKRAL*DGQRKSPSSHSQNGHIGNIRKGEDKITVTSSTGSEQENEDEKP----QSA 294
           +IQ+ K     G+ + P     +G    +RK  +KI  T S  S +  EDE+P    Q A
Sbjct: 79  EIQEDKHT---GKLEKPRPSVSHGRAQLLRKSAEKIEETVSDSSSESEEDEEPPDHRQEA 135

Query: 293 SQKLSQRYFK 264
           S  L   Y++
Sbjct: 136 SADLPSEYWQ 145


>tr|B7Z7A1|B7Z7A1_HUMAN cDNA FLJ52288, highly similar to Armadillo
           repeat-containing protein 4 OS=Homo sapiens PE=2 SV=1
          Length = 206

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 461 DIQQSKRAL*DGQRKSPSSHSQNGHIGNIRKGEDKITVTSSTGSEQENEDEKP----QSA 294
           +IQ+ K     G+ + P     +G    +RK  +KI  T S  S +  EDE+P    Q A
Sbjct: 79  EIQEDKHT---GKLEKPRPSVSHGRAQLLRKSAEKIEETVSDSSSESEEDEEPPDHRQEA 135

Query: 293 SQKLSQRYFK 264
           S  L   Y++
Sbjct: 136 SADLPSEYWQ 145


>tr|A8K906|A8K906_HUMAN cDNA FLJ75375, highly similar to Homo
           sapiens armadillo repeat containing 4 (ARMC4), mRNA
           OS=Homo sapiens GN=ARMC4 PE=2 SV=1
          Length = 1044

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 461 DIQQSKRAL*DGQRKSPSSHSQNGHIGNIRKGEDKITVTSSTGSEQENEDEKP----QSA 294
           +IQ+ K     G+ + P     +G    +RK  +KI  T S  S +  EDE+P    Q A
Sbjct: 387 EIQEDKHT---GKLEKPRPSVSHGRAQLLRKSAEKIEETVSDSSSESEEDEEPPDHRQEA 443

Query: 293 SQKLSQRYFK 264
           S  L   Y++
Sbjct: 444 SADLPSEYWQ 453


>tr|B6WXK2|B6WXK2_9DELT Putative uncharacterized protein
           OS=Desulfovibrio piger ATCC 29098 GN=DESPIG_02829 PE=4
           SV=1
          Length = 604

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -3

Query: 220 PATVVRGWEEETGDDLKGSVQCRGEK----KRC*VSRGAKSLPVS 98
           P  + +GW EE G+D+ G V+  G+K    K    + GA +LP+S
Sbjct: 274 PDALAQGWREEQGEDILGLVEKAGQKLVLEKAARDAAGAAALPLS 318


>tr|P90760|P90760_CAEEL Protein C27A7.7, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=srj-4
           PE=2 SV=1
          Length = 336

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +3

Query: 285 FLRGRLWFLILVFLLTACGAGYSYLVFTF-----ADVADVPILGVTRW 413
           F +G LWF  + FL+       SYLV  F     ADV  +P+L  T W
Sbjct: 141 FGQGLLWFFSVYFLMWPDSETRSYLVIPFRRDYNADVHKIPLLASTYW 188