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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944937
Clone id YMU02A01NGRL0007_K13
Library
Length 489
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_K13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAAAAAACTTTATCTTCGCAGA
AAATATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCGCT
CATTCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGA
AATACTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGA
CGTCTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGT
TGGAATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATC
CCTCGTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAA
AAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 31.2
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944937|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_K13, 5'
         (470 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    31   2.4  
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel...    30   5.3  
sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus ...    30   6.9  
sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens ...    30   6.9  
sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN...    30   6.9  
sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegic...    29   9.1  

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
 Frame = +2

Query: 251 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 397
           L+ T+ +++KE+N+W+++ D   +     RI        ++  K GIN SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
           burgdorferi GN=recB PE=3 SV=1
          Length = 1169

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +2

Query: 221 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 385
           IVL+ +  + LI+   +I  EKNLW+ + +    +TK Q+I    K  IN  G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
           GN=Mmp2 PE=2 SV=1
          Length = 662

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 148 WRNNKKTHIFCEDKVFFFFQLI*PRYDPSTIKITARRVTLLPLN 17
           W  NKKT+IF  DK F+ +  +  + DP   K+ A     +P N
Sbjct: 576 WSKNKKTYIFAGDK-FWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens
           GN=MMP2 PE=1 SV=2
          Length = 660

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 148 WRNNKKTHIFCEDKVFFFFQLI*PRYDPSTIKITARRVTLLPLN 17
           W  NKKT+IF  DK F+ +  +  + DP   K+ A     +P N
Sbjct: 574 WSKNKKTYIFAGDK-FWRYNEVKKKMDPGFPKLIADAWNAIPDN 616


>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus
           GN=MMP2 PE=2 SV=1
          Length = 661

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 148 WRNNKKTHIFCEDKVFFFFQLI*PRYDPSTIKITARRVTLLPLN 17
           W  NKKT+IF  DK F+ +  +  + DP   K+ A     +P N
Sbjct: 575 WSKNKKTYIFAGDK-FWRYNEVKKKMDPGFPKLIADAWNAIPDN 617


>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus
           GN=Mmp2 PE=2 SV=2
          Length = 662

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 148 WRNNKKTHIFCEDKVFFFFQLI*PRYDPSTIKITARRVTLLPLN 17
           W  NKKT+IF  DK F+ +  +  + DP   K+ A     +P N
Sbjct: 576 WSKNKKTYIFSGDK-FWRYNEVKKKMDPGFPKLIADSWNAIPDN 618
tr_hit_id Q9TY98
Definition tr|Q9TY98|Q9TY98_PLAF7 Putative uncharacterized protein PFB0190c OS=Plasmodium falciparum (isolate 3D7)
Align length 108
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944937|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_K13, 5'
         (470 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9TY98|Q9TY98_PLAF7 Putative uncharacterized protein PFB0190c...    33   5.5  
tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty...    33   9.3  

>tr|Q9TY98|Q9TY98_PLAF7 Putative uncharacterized protein PFB0190c
           OS=Plasmodium falciparum (isolate 3D7) GN=PFB0190c PE=4
           SV=1
          Length = 2295

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
 Frame = -2

Query: 400 MFNNLDKPGFIYSNFLSQIYSLRFSDDESAILDVYP*IFFFIYLPGSRN*TKYFLGYQNN 221
           +  ++++  + Y N L + YSL+   ++    ++Y  + + I L  ++N  KYF+ + NN
Sbjct: 179 ILKSINRNNYNYFNMLDE-YSLQTKLNK----EMYDSLNYLIRLMNNKNSRKYFISFSNN 233

Query: 220 XXXXXXXXXLEMNER---RD*LIYL*FWRNNKKTHIFCEDKVFFFFQL 86
                     +MNE    R  ++ L  W NN K    C DK  F + +
Sbjct: 234 --EKKKIIKNDMNENIYIRHFIVSLFRWYNNFKLIETCFDKNNFIYYI 279


>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
          Length = 955

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 242 ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFVKIIEHLF 406
           I+G ++ SGE+N E   ++   DS   +T    IN+GK   IN S  +  I   F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796