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NBDC - LSDB Archive
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DK944953
Clone id YMU02A01NGRL0007_L09
Library
Length 571
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_L09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AACTCTCTGTCTTGTGCACTCGCTGATCATCTCTAGACCGGCAGTAGCAATGGCGAGCTC
TGTGGCTTCTTTGGCAGTTGCTGCTCCCTCGTGCGCCCCGGCAGAGAGCCTATCTAAGAG
CTTCTCCGGCCTCAGGCCCACTACCCTCGCTGCCCCCAAGAGCGCCAACCCGCTCTCCAT
CTCCAACGGCAGCCGCGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTT
CGAGACTCTGTCCTACTTGCCGCCTTTGACAAGCGAGCAGATTGCGAAGCAGGTGGACTT
CATGGTCCGGAAGGGCTGGACCCCCTGCATTGAGTTCGACAAAATCGGAAGCGTATACCG
AGAGCACTTCCATGGCAGCGGCTACTACGATGGGCGATACTGGGTGATGTGGAAGTTGCC
CATGTTTGGCTGCCAAGATGCCGCCGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGA
GCACCCCGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCCAAGAGGCAGGTGCAGGTCTC
CGGCTTCCTTGTCCAGAAGCCCTCTGTCTAG
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 157
Score (bit) 181.0
E-value 3.0e-45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944953|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_L09, 5'
         (571 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   181   3e-45
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   180   5e-45
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   180   5e-45
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   179   9e-45
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   179   1e-44
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   177   3e-44
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   177   4e-44
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   177   4e-44
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   177   4e-44
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   177   4e-44
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   176   6e-44
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   176   7e-44
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   175   1e-43
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   175   2e-43
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   174   2e-43
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   174   2e-43
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   173   5e-43
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   173   5e-43
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   173   5e-43
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   173   6e-43
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   173   6e-43
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   173   6e-43
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   172   8e-43
sp|Q0INY7|RBS1_ORYSJ Ribulose bisphosphate carboxylase small cha...   172   8e-43
sp|A2Y205|RBS1_ORYSI Ribulose bisphosphate carboxylase small cha...   172   8e-43
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   172   1e-42
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   172   1e-42

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  181 bits (458), Expect = 3e-45
 Identities = 86/157 (54%), Positives = 109/157 (69%), Gaps = 6/157 (3%)
 Frame = +2

Query: 110 LSKSFSGLR-----PTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTS 274
           L+  F+GL+     P T  A    + L  SNG RV  M VW P   KK+ETLSYLPPL+ 
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLP-SNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 275 EQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 451
           E ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V
Sbjct: 81  EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 452 LREIAECAKEHPEAFIRVLGFDAKRQVQVSGFLVQKP 562
           ++E+ EC KE+P AFIRV+GFD  RQVQ   F+V KP
Sbjct: 141 MKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  180 bits (456), Expect = 5e-45
 Identities = 87/152 (57%), Positives = 106/152 (69%), Gaps = 4/152 (2%)
 Frame = +2

Query: 122 FSGLRPTTL--AAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 289
           F+GLR +    A  K+ N LS   SNG RVS M VW P   KKFETLSYLPPL+ E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 290 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 469
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 470 CAKEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
             K +PE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  180 bits (456), Expect = 5e-45
 Identities = 87/152 (57%), Positives = 106/152 (69%), Gaps = 4/152 (2%)
 Frame = +2

Query: 122 FSGLRPTTL--AAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 289
           F+GLR +    A  K+ N LS   SNG RVS M VW P   KKFETLSYLPPL+ E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 290 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 469
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 470 CAKEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
             K +PE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  179 bits (454), Expect = 9e-45
 Identities = 78/127 (61%), Positives = 96/127 (75%)
 Frame = +2

Query: 182 SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 361
           SNG RV  M VW P   KKFETLSYLPPLT EQ+ ++VD+++R GW PCIEF K+G VYR
Sbjct: 49  SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYR 108

Query: 362 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEHPEAFIRVLGFDAKRQVQVS 541
           E+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K +P+ F R++GFD  RQVQ  
Sbjct: 109 EYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCI 168

Query: 542 GFLVQKP 562
            FL  KP
Sbjct: 169 SFLTYKP 175


>sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1
          Length = 177

 Score =  179 bits (453), Expect = 1e-44
 Identities = 86/153 (56%), Positives = 106/153 (69%), Gaps = 5/153 (3%)
 Frame = +2

Query: 122 FSGLR-----PTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIA 286
           F+GLR     P T  A K+ + L  SNG +VS M VW P   KKFETLSYLPPL+ E +A
Sbjct: 26  FNGLRSSVAFPATRKANKNLSTLP-SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLA 84

Query: 287 KQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
           K+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ 
Sbjct: 85  KEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVE 144

Query: 467 ECAKEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
           E  K +PE F+R++GFD KRQVQ   F+  KP+
Sbjct: 145 EAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  177 bits (450), Expect = 3e-44
 Identities = 80/128 (62%), Positives = 98/128 (76%), Gaps = 1/128 (0%)
 Frame = +2

Query: 182 SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFD-KIGSVY 358
           SNG RV  M VW P   KKFETLSYLPPL+SEQ+AK+VD+++RK   PC+EF+ + G VY
Sbjct: 52  SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVY 111

Query: 359 REHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEHPEAFIRVLGFDAKRQVQV 538
           REH    GYYDGRYW MWKLPMFGC D++ VL+E+ EC K +P AFIR++GFD KRQVQ+
Sbjct: 112 REHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQI 171

Query: 539 SGFLVQKP 562
             F+  KP
Sbjct: 172 ISFIAYKP 179


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  177 bits (449), Expect = 3e-44
 Identities = 83/152 (54%), Positives = 108/152 (71%), Gaps = 5/152 (3%)
 Frame = +2

Query: 122 FSGLRPTTL--AAPKSANPLS--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 289
           F+GL+ +    A  K+ N ++   SNG RV+ M VW P   KKFETLSYLP LT  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 290 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 467 ECAKEHPEAFIRVLGFDAKRQVQVSGFLVQKP 562
           EC KE+P AFIR++GFD  RQVQ   F+  KP
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  177 bits (448), Expect = 4e-44
 Identities = 84/157 (53%), Positives = 111/157 (70%), Gaps = 4/157 (2%)
 Frame = +2

Query: 110 LSKSFSGLRPTT-LAAPKSANPLS--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQ 280
           L+  F+GL+ +      K  N ++   SNGSRV+ M VW P   KKFETLSYLPPLT EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 281 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 457
           + K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 458 EIAECAKEHPEAFIRVLGFDAKRQVQVSGFLVQKPSV 568
           E+AEC  E+PEAFIR++GFD  RQVQ   F+   P V
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Hordeum vulgare PE=2 SV=1
          Length = 174

 Score =  177 bits (448), Expect = 4e-44
 Identities = 79/150 (52%), Positives = 104/150 (69%), Gaps = 3/150 (2%)
 Frame = +2

Query: 122 FSGLRPTT---LAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQ 292
           F GL+ T    ++   +A+  S+SNG R+  M VW     KKFETLSYLPPL++E + KQ
Sbjct: 16  FQGLKSTAGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQ 75

Query: 293 VDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEC 472
           VD+++R  W PC+EF K+G ++REH    GYYDGRYW MWKLPMFGC DA  VL E+ E 
Sbjct: 76  VDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEV 135

Query: 473 AKEHPEAFIRVLGFDAKRQVQVSGFLVQKP 562
            KE+P+A++R++GFD  RQVQ   F+  KP
Sbjct: 136 KKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 165


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  177 bits (448), Expect = 4e-44
 Identities = 87/155 (56%), Positives = 110/155 (70%), Gaps = 8/155 (5%)
 Frame = +2

Query: 122 FSGLR-----PTTLAAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQ 280
           F+GL+     PTT    K AN  S   SNG RV  M VW P   KK+ETLSYLPPLT  Q
Sbjct: 25  FTGLKSNAAFPTT----KKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQ 80

Query: 281 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 457
           +AK+VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D+A V++
Sbjct: 81  LAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMK 140

Query: 458 EIAECAKEHPEAFIRVLGFDAKRQVQVSGFLVQKP 562
           E+AEC KE+P+A+IR++GFD  RQVQ   F+  +P
Sbjct: 141 ELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRP 175
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 152
Score (bit) 283.0
E-value 5.0e-75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944953|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_L09, 5'
         (571 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   283   5e-75
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   201   2e-50
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   200   4e-50
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   197   3e-49
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   196   8e-49
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   193   5e-48
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   193   6e-48
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   184   3e-45
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   184   4e-45
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   184   4e-45
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   183   7e-45
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   181   3e-44
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   181   3e-44
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   181   3e-44
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   180   6e-44
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   180   6e-44
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   180   6e-44
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   178   2e-43
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   178   2e-43
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   177   3e-43
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   177   4e-43
tr|Q9ZWG6|Q9ZWG6_HORVU Ribulose bisphosphate carboxylase small c...   177   5e-43
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   177   5e-43
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   176   6e-43
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   176   8e-43
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   176   8e-43

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  283 bits (724), Expect = 5e-75
 Identities = 131/152 (86%), Positives = 144/152 (94%)
 Frame = +2

Query: 110 LSKSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 289
           LSKSFSGL+  TL APK ANPL+ISNGSR+SAMLVWKPYDNKKFETLSYLPPLT++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 290 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 469
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 470 CAKEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
           CAKE+P AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  201 bits (512), Expect = 2e-50
 Identities = 95/153 (62%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
 Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 295
           K FSGL+ TTL+A K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 467 ECAKEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
           EC +  P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  200 bits (509), Expect = 4e-50
 Identities = 95/153 (62%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 295
           K FSGL+ TTL A K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 467 ECAKEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
           EC +  P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  197 bits (502), Expect = 3e-49
 Identities = 91/153 (59%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
 Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 295
           K+FSGL+P TL + K+    ++ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 467 ECAKEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
           EC  + P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  196 bits (498), Expect = 8e-49
 Identities = 91/153 (59%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 295
           K+FSGL+  TL + K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 467 ECAKEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
           EC  + P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  193 bits (491), Expect = 5e-48
 Identities = 89/153 (58%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 295
           K+FSGL+  TL + ++    S+ NGSRV  M VW P    KFET SYLPPLT ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 467 ECAKEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
           EC  + P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  193 bits (490), Expect = 6e-48
 Identities = 89/153 (58%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 295
           K+FSGL+  TL   KS    S+ NGSRV  M VW P    KFET SYLPPL+ +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 467 ECAKEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
           EC   +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  184 bits (467), Expect = 3e-45
 Identities = 85/150 (56%), Positives = 106/150 (70%)
 Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 295
           K+FSGL+  T+ + K+ N  S+ NGSRV  M VW P    KFET SYLPPL+ + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 475
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 476 KEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
           K  P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  184 bits (466), Expect = 4e-45
 Identities = 86/150 (57%), Positives = 106/150 (70%)
 Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 295
           K+FSGL+ +TL + K+ +  S+ NGSRV  M VW P    KFET SYLPPL+ + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 475
           D+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 476 KEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
           K  P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  184 bits (466), Expect = 4e-45
 Identities = 86/150 (57%), Positives = 107/150 (71%)
 Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 295
           K+FSGL+  TL + +S    S+ NGSRV+ M VW P    KFET SYLPPL+ + IAKQV
Sbjct: 32  KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 475
           ++M+++   PC+EFD    V RE+    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 476 KEHPEAFIRVLGFDAKRQVQVSGFLVQKPS 565
           K  P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181