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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944955
Clone id YMU02A01NGRL0007_L12
Library
Length 431
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_L12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGTAGAGGCTTGCCAGAGGTGCCCTTACCACCTCGACCACCAAGGAAGGATCCATTGGAT
GATGGTGAGTTTGTGGAGATCATTATAGATGACAATCTTTTCAAGAAGAAAGTTTAAGCG
GGGCACCTCTTAAGATCGTTACATGGTTCGCTTCCTCATCAAGGAATTCTTGTGCGAGTT
AAGTCTGCTGAAAAAACACGTATTGACGAAGGGGCATTTTGAAAAAAGGTATTATTACTT
CTCTTTGGCCAGCTAACATCAGCTGAAGATAGCCTTAAACTGATCGCTCATTTGCAAGAT
CACATGTAATGTGGTATTTCTTTTCTTTGATGTACCCCTGATTACATCAACATCTTGTGT
ATTTCTTAGTTGAGCGTTTCTTGCAACCTTTGTTCCATATCGAANAAAAAAAAAAAAAAA
AAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q7Z6G3
Definition sp|Q7Z6G3|NECA2_HUMAN N-terminal EF-hand calcium-binding protein 2 OS=Homo sapiens
Align length 72
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944955|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_L12, 5'
         (402 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7Z6G3|NECA2_HUMAN N-terminal EF-hand calcium-binding protein...    31   2.2  
sp|Q91ZP9|NECA2_MOUSE N-terminal EF-hand calcium-binding protein...    29   6.3  
sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related pro...    29   8.3  

>sp|Q7Z6G3|NECA2_HUMAN N-terminal EF-hand calcium-binding protein 2
           OS=Homo sapiens GN=NECAB2 PE=2 SV=1
          Length = 386

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
 Frame = +2

Query: 2   VEACQRCPYHLDHQGRIHWMMVSLWRSL*MTI-----FSRRKFKRGTS*DRYMVRFLIKE 166
           V+  + C Y +DH G    ++ SL  +L  ++     ++++ ++ G++ D+++ RFL+KE
Sbjct: 114 VDTKELCDYFVDHMGDYEDVLASL-ETLNHSVLKAMGYTKKVYEGGSNVDQFVTRFLLKE 172

Query: 167 FLCELSLLKKHV 202
              ++  L   V
Sbjct: 173 TANQIQSLLSSV 184


>sp|Q91ZP9|NECA2_MOUSE N-terminal EF-hand calcium-binding protein 2
           OS=Mus musculus GN=Necab2 PE=1 SV=1
          Length = 389

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
 Frame = +2

Query: 2   VEACQRCPYHLDHQGRIHWMMVSLWRSL*MTI-----FSRRKFKRGTS*DRYMVRFLIKE 166
           V+  + C Y ++H G    ++ SL  +L  ++     ++++ ++ G++ D+++ RFL+KE
Sbjct: 117 VDTKELCDYFVEHMGDYEDVLASL-ETLNHSVLKAMGYTKKVYEGGSNVDQFVTRFLLKE 175

Query: 167 FLCELSLLKKHV 202
              ++  L   V
Sbjct: 176 TANQIQSLLSSV 187


>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related
           protein OS=Caenorhabditis elegans GN=lrp-1 PE=1 SV=1
          Length = 4753

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 352 C*CNQGYIKEKKYHITCDLANERSV*GYLQLMLAGQR 242
           C C  GY  + ++H TC   NE +  GY   + A  R
Sbjct: 320 CTCPSGYKLDDRFHRTCSDINECAEFGYCDQLCANHR 356
tr_hit_id Q4KME0
Definition tr|Q4KME0|Q4KME0_DANRE Zgc:112232 OS=Danio rerio
Align length 72
Score (bit) 34.3
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944955|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_L12, 5'
         (402 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4KME0|Q4KME0_DANRE Zgc:112232 OS=Danio rerio GN=zgc:112232 P...    34   3.1  
tr|A3KQL1|A3KQL1_DANRE Novel protein similar to vertebrate EF ha...    34   3.1  

>tr|Q4KME0|Q4KME0_DANRE Zgc:112232 OS=Danio rerio GN=zgc:112232 PE=2
           SV=1
          Length = 269

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
 Frame = +2

Query: 2   VEACQRCPYHLDHQGRIHWMMVSLWRSL*MTI-----FSRRKFKRGTS*DRYMVRFLIKE 166
           V+  + C Y  +H G    ++ SL  +L + I     F+++ ++RGT+ ++++ RFL+KE
Sbjct: 85  VDTKELCDYFANHMGDYEGVLASL-ETLNLAILKAMDFTKKVYERGTNVEQFVTRFLLKE 143

Query: 167 FLCELSLLKKHV 202
              ++  L   V
Sbjct: 144 SANQIQSLLSSV 155


>tr|A3KQL1|A3KQL1_DANRE Novel protein similar to vertebrate EF hand
           calcium binding protein 2 (EFCBP2, zgc:112232) OS=Danio
           rerio GN=CH211-267G5.1 PE=4 SV=2
          Length = 428

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
 Frame = +2

Query: 2   VEACQRCPYHLDHQGRIHWMMVSLWRSL*MTI-----FSRRKFKRGTS*DRYMVRFLIKE 166
           V+  + C Y  +H G    ++ SL  +L + I     F+++ ++RGT+ ++++ RFL+KE
Sbjct: 153 VDTKELCDYFANHMGDYEGVLASL-ETLNLAILKAMDFTKKVYERGTNVEQFVTRFLLKE 211

Query: 167 FLCELSLLKKHV 202
              ++  L   V
Sbjct: 212 SANQIQSLLSSV 223