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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944964
Clone id YMU02A01NGRL0007_L21
Library
Length 644
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_L21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
AATGTTTTTTAGACATATACAAATCTAATGCCAGAAGACAGACTCACGCACTCCACTTTC
CCACCACTTTCTATTTCTGTCCTCAAATGCTTTATACAGCTAGACAACATAAGCAAGCTT
ACAAACACTTCTACTCTCTTCCTGCCCCATATCCCTACTACCACAAAGAAGCTGTCGCAA
ATTACAACATCGCTTGTTGTGAATCCGCACTCAGTTATCAGCAGTCCATTTTGTCATCCT
TAAATGAAGGATCACATGCTTGACTTGACGATTATAAAACTACCTGATCTGATACTGATC
TTGCCAACCACTAATGCTCTCCCATATTGACACCTGTACTCCACTATCATCAAAACACGA
TTATCTGCAACAAAGCCATAAAATCCCAGACCACCGTGTGTGGTCTCATTGTCTTGCACA
CCTGACTCAACAGAGCGGTATAGACGAATCAACTTCATGACTAGATATATGTTGCTTATA
ACCTAGAGCATTCCTTTTGCAATTGCACTTTTTGAATGATGTTATACTATGATAACTCGA
AATATGCATTCAGGAATTCATCGTTGCTTGGTCCTTCAAAACAATAAATTGGACTACCCC
CCNAAAAAAAAAGAAACCCAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5KP25
Definition sp|Q5KP25|RSE1_CRYNE Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans
Align length 74
Score (bit) 30.4
E-value 7.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944964|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_L21, 5'
         (603 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5KP25|RSE1_CRYNE Pre-mRNA-splicing factor RSE1 OS=Cryptococc...    30   7.3  

>sp|Q5KP25|RSE1_CRYNE Pre-mRNA-splicing factor RSE1 OS=Cryptococcus
           neoformans GN=RSE1 PE=3 SV=1
          Length = 1217

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 13  TYTNLMPEDRLTHSTFP-PLSISVLKCFIQLDNISKLTNTSTLFLPHIPTTTKKLSQITT 189
           TY +++    L + T     S+S   C   L  IS     +TL + +IP   +KL Q +T
Sbjct: 737 TYQDMLQTQPLIYDTLEYAWSLSAAMCPDGLIGISG----NTLRIFNIPKLGEKLKQDST 792

Query: 190 SLVVNPHSVISSPF 231
           +L   P   IS PF
Sbjct: 793 ALTYTPRKFISHPF 806
tr_hit_id A9RPD5
Definition tr|A9RPD5|A9RPD5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 106
Score (bit) 69.3
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944964|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_L21, 5'
         (603 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RPD5|A9RPD5_PHYPA Predicted protein OS=Physcomitrella paten...    69   2e-10
tr|B7FKN6|B7FKN6_MEDTR Putative uncharacterized protein OS=Medic...    64   9e-09
tr|Q9AT39|Q9AT39_SOYBN SHOOT1 protein OS=Glycine max GN=SHOOT1 P...    60   1e-07
tr|A7P0A9|A7P0A9_VITVI Chromosome chr6 scaffold_3, whole genome ...    59   3e-07
tr|A9NVF4|A9NVF4_PICSI Putative uncharacterized protein OS=Picea...    57   1e-06
tr|A5AKU0|A5AKU0_VITVI Putative uncharacterized protein OS=Vitis...    55   4e-06
tr|Q94BS2|Q94BS2_ARATH Putative uncharacterized protein At1g5548...    50   1e-04
tr|Q8L972|Q8L972_ARATH Putative uncharacterized protein OS=Arabi...    50   1e-04
tr|Q9LKK3|Q9LKK3_ORYSA Putative tyrosine phosphatase (Fragment) ...    50   1e-04
tr|Q710P9|Q710P9_ORYSA Putative tyrosine phosphatase (Fragment) ...    50   1e-04
tr|Q69LC1|Q69LC1_ORYSJ Os07g0171100 protein OS=Oryza sativa subs...    50   1e-04
tr|Q69LC0|Q69LC0_ORYSJ cDNA clone:001-045-E07, full insert seque...    50   1e-04
tr|A2YIK9|A2YIK9_ORYSI Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|Q99CX8|Q99CX8_BHV4 Tegument protein OS=Bovine herpesvirus 4 P...    36   1.5  
tr|A8HQJ5|A8HQJ5_CHLRE Predicted protein OS=Chlamydomonas reinha...    36   2.0  
tr|B8IZE5|B8IZE5_DESDE Tol-pal system protein YbgF OS=Desulfovib...    35   4.4  

>tr|A9RPD5|A9RPD5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_117443 PE=4 SV=1
          Length = 290

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 41/106 (38%), Positives = 58/106 (54%)
 Frame = +3

Query: 90  LYTARQHKQAYKHFYSLPAPYPYYHKEAVANYNIACCESALSYQQSILSSLNEGSHA*LD 269
           LY   ++++A  HF S+    P   +EAVA+YN+ACC S L+  +S L +L E   A  D
Sbjct: 180 LYKQGKYEEALGHFESVLGLKPEAREEAVASYNVACCYSKLNQIESGLQALEEAMEAGFD 239

Query: 270 DYKTT*SDTDLANH*CSPILTPVLHYHQNTIICNKAIKSQTTVCGL 407
           DYKT   D DLA    SP  TP+++ +    I   A+ +   V GL
Sbjct: 240 DYKTVREDPDLALLRQSPGFTPLINKYDEPFINENAMNAIKNVFGL 285


>tr|B7FKN6|B7FKN6_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 335

 Score = 63.5 bits (153), Expect = 9e-09
 Identities = 36/106 (33%), Positives = 59/106 (55%)
 Frame = +3

Query: 87  MLYTARQHKQAYKHFYSLPAPYPYYHKEAVANYNIACCESALSYQQSILSSLNEGSHA*L 266
           +LY   ++++A + F S+    P   + AVA+YN+ACC S L+  Q+ LS+L E  ++  
Sbjct: 226 LLYRNAKYEEALEKFESVLGSKPEPDEAAVASYNVACCYSKLNQIQAALSTLEEALNSGF 285

Query: 267 DDYKTT*SDTDLANH*CSPILTPVLHYHQNTIICNKAIKSQTTVCG 404
           +D+K   +D DLAN   SP   P+L     + I   AI +  ++ G
Sbjct: 286 EDFKRIRTDPDLANLRASPEFDPLLKRFDESFINESAINAIKSIFG 331


>tr|Q9AT39|Q9AT39_SOYBN SHOOT1 protein OS=Glycine max GN=SHOOT1 PE=2
           SV=1
          Length = 359

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 36/105 (34%), Positives = 55/105 (52%)
 Frame = +3

Query: 90  LYTARQHKQAYKHFYSLPAPYPYYHKEAVANYNIACCESALSYQQSILSSLNEGSHA*LD 269
           LY   ++ +A + F S+    P   + AVA+YN+ACC S L+  Q+ LSSL E  +   +
Sbjct: 251 LYKNGKYDEALEKFESILGSKPEPEEAAVASYNVACCYSKLNQIQAALSSLEEALNTGFE 310

Query: 270 DYKTT*SDTDLANH*CSPILTPVLHYHQNTIICNKAIKSQTTVCG 404
           D+K   +D DLAN   S    P+L     + I   AI +  ++ G
Sbjct: 311 DFKRIRTDPDLANARASEEFDPLLKRFDESFINENAINAIKSLFG 355


>tr|A7P0A9|A7P0A9_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024835001
           PE=4 SV=1
          Length = 329

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 35/107 (32%), Positives = 59/107 (55%)
 Frame = +3

Query: 90  LYTARQHKQAYKHFYSLPAPYPYYHKEAVANYNIACCESALSYQQSILSSLNEGSHA*LD 269
           LY + ++++A   F S+    P  ++ + A+YN+ACC S L+  Q+ LS+L +   A  +
Sbjct: 220 LYRSAKYEEALDKFESVLGSKPDPNEASAASYNVACCYSKLNQIQAGLSALEDALEAGYE 279

Query: 270 DYKTT*SDTDLANH*CSPILTPVLHYHQNTIICNKAIKSQTTVCGLI 410
           D+KT  +D DLAN   S    P+L     + I   AI +  ++ GL+
Sbjct: 280 DFKTIRTDPDLANIRKSEEFEPLLKRFDESFINENAINAIKSLFGLL 326


>tr|A9NVF4|A9NVF4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 343

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 33/105 (31%), Positives = 56/105 (53%)
 Frame = +3

Query: 90  LYTARQHKQAYKHFYSLPAPYPYYHKEAVANYNIACCESALSYQQSILSSLNEGSHA*LD 269
           LY   +++ A ++F S+    P   + AV +YN+ACC S L+  ++ LS+L +   A  +
Sbjct: 235 LYKEGKYEAALENFESVLGSKPERREAAVTSYNVACCYSQLNQIEAGLSALEDAMEAGYE 294

Query: 270 DYKTT*SDTDLANH*CSPILTPVLHYHQNTIICNKAIKSQTTVCG 404
           DY+T  +D D+AN   S    P+L  +    I   AI +  ++ G
Sbjct: 295 DYQTIRTDPDIANLRSSEKFKPLLDKYDEPFINENAINAIKSLFG 339


>tr|A5AKU0|A5AKU0_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_041015 PE=4 SV=1
          Length = 1051

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 33/102 (32%), Positives = 56/102 (54%)
 Frame = +3

Query: 105  QHKQAYKHFYSLPAPYPYYHKEAVANYNIACCESALSYQQSILSSLNEGSHA*LDDYKTT 284
            ++++A   F S+    P  ++ + A+YN+ACC S L+  Q+ LS+L +   A  +D+KT 
Sbjct: 947  KYEEALDKFESVLGSKPDPNEASAASYNVACCYSKLNQIQAGLSALEDALEAGYEDFKTI 1006

Query: 285  *SDTDLANH*CSPILTPVLHYHQNTIICNKAIKSQTTVCGLI 410
             +D DLAN   S    P+L     + I   AI +  ++ GL+
Sbjct: 1007 RTDPDLANIRKSEEFEPLLKRFDESFINENAINAIKSLFGLL 1048


>tr|Q94BS2|Q94BS2_ARATH Putative uncharacterized protein At1g55480
           (GAN) (Putative uncharacterized protein ZKT)
           OS=Arabidopsis thaliana GN=ZKT PE=2 SV=1
          Length = 335

 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 31/100 (31%), Positives = 52/100 (52%)
 Frame = +3

Query: 105 QHKQAYKHFYSLPAPYPYYHKEAVANYNIACCESALSYQQSILSSLNEGSHA*LDDYKTT 284
           ++++A + F S+    P   + +VA+YN+ACC S L+  Q+ LS+L E   +  +D+K  
Sbjct: 232 KYEEALERFESVLGSKPTPEEASVASYNVACCYSKLNQVQAGLSALEEALKSGYEDFKRI 291

Query: 285 *SDTDLANH*CSPILTPVLHYHQNTIICNKAIKSQTTVCG 404
            SD DL     S    P+L     + I   AI +  ++ G
Sbjct: 292 RSDPDLETLRKSKDFDPLLKQFDESFINESAINAIKSLFG 331


>tr|Q8L972|Q8L972_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 335

 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 31/100 (31%), Positives = 52/100 (52%)
 Frame = +3

Query: 105 QHKQAYKHFYSLPAPYPYYHKEAVANYNIACCESALSYQQSILSSLNEGSHA*LDDYKTT 284
           ++++A + F S+    P   + +VA+YN+ACC S L+  Q+ LS+L E   +  +D+K  
Sbjct: 232 KYEEALERFESVLGSKPTPEEASVASYNVACCYSKLNQVQAGLSALEEALKSGYEDFKRI 291

Query: 285 *SDTDLANH*CSPILTPVLHYHQNTIICNKAIKSQTTVCG 404
            SD DL     S    P+L     + I   AI +  ++ G
Sbjct: 292 RSDPDLETLRKSKDFDPLLKQFDESFINESAINAIKSLFG 331


>tr|Q9LKK3|Q9LKK3_ORYSA Putative tyrosine phosphatase (Fragment)
           OS=Oryza sativa PE=2 SV=1
          Length = 240

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 29/105 (27%), Positives = 56/105 (53%)
 Frame = +3

Query: 90  LYTARQHKQAYKHFYSLPAPYPYYHKEAVANYNIACCESALSYQQSILSSLNEGSHA*LD 269
           LY   ++++A + F S+    P  ++ ++A+YN+ACC S L   Q+ +S+L +   A  +
Sbjct: 132 LYKDGKYEEALEKFESVLGSKPEINESSIASYNVACCYSKLDRIQAGISALEDALKAGYE 191

Query: 270 DYKTT*SDTDLANH*CSPILTPVLHYHQNTIICNKAIKSQTTVCG 404
           D+K   +D DL N   +     +L+ +  + I   AI +  ++ G
Sbjct: 192 DFKRIRTDPDLENLRKTEEFNVLLNKYDESFINENAINAIKSLFG 236


>tr|Q710P9|Q710P9_ORYSA Putative tyrosine phosphatase (Fragment)
           OS=Oryza sativa GN=xd9 PE=2 SV=1
          Length = 111

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 29/105 (27%), Positives = 56/105 (53%)
 Frame = +3

Query: 90  LYTARQHKQAYKHFYSLPAPYPYYHKEAVANYNIACCESALSYQQSILSSLNEGSHA*LD 269
           LY   ++++A + F S+    P  ++ ++A+YN+ACC S L   Q+ +S+L +   A  +
Sbjct: 3   LYKDGKYEEALEKFESVLGSKPEINESSIASYNVACCYSKLDRIQAGISALEDALKAGYE 62

Query: 270 DYKTT*SDTDLANH*CSPILTPVLHYHQNTIICNKAIKSQTTVCG 404
           D+K   +D DL N   +     +L+ +  + I   AI +  ++ G
Sbjct: 63  DFKRIRTDPDLENLRKTEEFNVLLNKYDESFINENAINAIKSLFG 107