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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945009
Clone id YMU02A01NGRL0007_O10
Library
Length 227
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_O10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAAGTCCTGGAAGAAAAGGGGGGCTTACCTACTAAATATCTGACGTGGCAGAAGGGATC
TCCCAGAGACAAGAAGGGATGATATATTGGAACGACAAGCAGGGAGGAGAAAGAATTGGG
CAAAAATGATGGGCACAAGAAATGGCACAAAAAAAGCTGAACCTCTGTCGGCCGACCCGC
CCCTCGCGAAGGTCCCCAGACCACTCGTTAGGCGCGCGGGCCCATTC
■■Homology search results ■■ -
sp_hit_id A7E8B6
Definition sp|A7E8B6|SLA1_SCLS1 Actin cytoskeleton-regulatory complex protein sla1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
Align length 70
Score (bit) 29.3
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945009|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_O10, 5'
         (227 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7E8B6|SLA1_SCLS1 Actin cytoskeleton-regulatory complex prote...    29   6.5  

>sp|A7E8B6|SLA1_SCLS1 Actin cytoskeleton-regulatory complex protein
           sla1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 /
           1980 / Ss-1) GN=sla1 PE=3 SV=2
          Length = 1150

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 21  GAYLLNI*RGRRDLPETRRDDILERQAGRRKNWAKMMGTRNGTKKAEPLSADPPLAKVPR 200
           G  L N  R  R  P  + +D+++  A           ++NGT+K+ P     PLA  P 
Sbjct: 737 GGALKNNTRKGRPAPAVQTNDVVDANAF----------SQNGTEKSSPQGVATPLANAPT 786

Query: 201 PL---VRRAG 221
           P    V+R G
Sbjct: 787 PAEKDVKREG 796
tr_hit_id B2VXE0
Definition tr|B2VXE0|B2VXE0_PYRTR tRNA (Guanine-N(1)-)-methyltransferase OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
Align length 44
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945009|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_O10, 5'
         (227 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2VXE0|B2VXE0_PYRTR tRNA (Guanine-N(1)-)-methyltransferase OS...    34   3.2  

>tr|B2VXE0|B2VXE0_PYRTR tRNA (Guanine-N(1)-)-methyltransferase
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_03186 PE=4 SV=1
          Length = 393

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 48  GRRDLPETRRDDILERQAGRRKNWAKMMGTRNGTKKAEPLSADP 179
           GR D    R++ I E++  RR+ WA+M    NG K   P S  P
Sbjct: 81  GREDRKLKRKEKIKEKKERRRETWAQMPVDENGNKPRPPPSRAP 124