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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945015
Clone id YMU02A01NGRL0007_O20
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_O20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGTATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGAT
AGTTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAAACTTTATCTTCGCAGAA
AATATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTC
ATTCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAA
ATACTTGGTTTAATTTCTACTTCCGGGGAGATAAGTAAAGAAAAAAATCTATGGGTAGAC
GTCTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTT
GGAATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCC
CTCGTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTCANAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 32.3
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945015|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_O20, 5'
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    32   1.1  
sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus ...    32   1.9  
sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens ...    32   1.9  
sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN...    32   1.9  
sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegic...    31   2.4  
sp|Q6GN91|NT5D3_XENLA 5'-nucleotidase domain-containing protein ...    30   4.1  
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel...    30   4.2  
sp|Q86UY8|NT5D3_HUMAN 5'-nucleotidase domain-containing protein ...    30   6.9  
sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus c...    30   7.1  
sp|Q3UHB1|NT5D3_MOUSE 5'-nucleotidase domain-containing protein ...    29   9.1  

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
 Frame = +1

Query: 250 LISTSGEISKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 396
           L+ T+ ++SKE+N+W+++ D   +     RI        ++  K GIN SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
           GN=Mmp2 PE=2 SV=1
          Length = 662

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 147 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 19
           W  NKKT+IF  DK + +  +  + DP   K+ A     +P N
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens
           GN=MMP2 PE=1 SV=2
          Length = 660

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 147 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 19
           W  NKKT+IF  DK + +  +  + DP   K+ A     +P N
Sbjct: 574 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 616


>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus
           GN=MMP2 PE=2 SV=1
          Length = 661

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 147 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 19
           W  NKKT+IF  DK + +  +  + DP   K+ A     +P N
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 617


>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus
           GN=Mmp2 PE=2 SV=2
          Length = 662

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 147 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 19
           W  NKKT+IF  DK + +  +  + DP   K+ A     +P N
Sbjct: 576 WSKNKKTYIFSGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|Q6GN91|NT5D3_XENLA 5'-nucleotidase domain-containing protein 3
           OS=Xenopus laevis GN=nt5dc3 PE=2 SV=1
          Length = 499

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 127 TYFLRR*SFFLSVNLAEIRS-LNYQNHCETSHTFTTKLYPLRY 2
           TYFLRR S F  + +  + S LNY  H    HTF  K  PL++
Sbjct: 435 TYFLRRLSRFADIYMESLSSLLNYDLH----HTFYPKRTPLQH 473


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
           burgdorferi GN=recB PE=3 SV=1
          Length = 1169

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +1

Query: 220 IVLVPQEILGLISTSGEISKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 384
           IVL+ +  + LI+   +I+ EKNLW+ + +    +TK Q+I    K  IN  G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|Q86UY8|NT5D3_HUMAN 5'-nucleotidase domain-containing protein 3
           OS=Homo sapiens GN=NT5DC3 PE=2 SV=1
          Length = 548

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 127 TYFLRR*SFFLSVNLAEIRS-LNYQNHCETSHTFTTKLYPLRY 2
           TYFLRR S F  + +A +   LNY    + SHTF  +  PL++
Sbjct: 487 TYFLRRLSRFADIYMASLSCLLNY----DVSHTFYPRRTPLQH 525


>sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus
           cuniculus GN=MMP2 PE=2 SV=1
          Length = 662

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 147 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLP 25
           W  NKKT+IF  DK + +  +  + DP   ++ A     +P
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPRLIADAWNAIP 616


>sp|Q3UHB1|NT5D3_MOUSE 5'-nucleotidase domain-containing protein 3
           OS=Mus musculus GN=Nt5dc3 PE=2 SV=1
          Length = 546

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 127 TYFLRR*SFFLSVNLAEIRS-LNYQNHCETSHTFTTKLYPLRY 2
           TYFLRR S F  + +A +   LNY  H    HTF  +  PL++
Sbjct: 485 TYFLRRLSRFADIYMASLSCLLNYDVH----HTFYPRRTPLQH 523
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945015|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_O20, 5'
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******