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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945021
Clone id YMU02A01NGRL0007_P06
Library
Length 368
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_P06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GGCGTGCATGTTAGGGTATTCAATTGTTAACATTTTCCAATGCTGCTGGCGCCTGATATG
GTATGCCTGAATTTGTGACAAGCAGCAAGTGCTTGCACTATTTCGAAGTTGCTTCAAGTG
TAACAGAGGCTTAGTTTTTTGTCCTATTTTTTAAAACTACAGAAGAACCCATTTGTGCTC
TTACCCATTTACTTCTCTGTGAAGTCGGTGGGGATTTTTGGAGCACATGATGGCTTATAT
AGTCAGTAGCGTTGACGGTGAGCTGTCTTTTGAAGAGCTATCATGTGAATGGTTATCTTA
GACCTTAAATCTATGGTATTGTCAGTTCCATGGGTCCATAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
■■Homology search results ■■ -
sp_hit_id P11717
Definition sp|P11717|MPRI_HUMAN Cation-independent mannose-6-phosphate receptor OS=Homo sapiens
Align length 16
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945021|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_P06, 5'
         (339 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11717|MPRI_HUMAN Cation-independent mannose-6-phosphate rece...    32   0.99 
sp|Q07113|MPRI_MOUSE Cation-independent mannose-6-phosphate rece...    31   1.7  
sp|P08169|MPRI_BOVIN Cation-independent mannose-6-phosphate rece...    31   1.7  
sp|O00268|TAF4_HUMAN Transcription initiation factor TFIID subun...    30   2.9  

>sp|P11717|MPRI_HUMAN Cation-independent mannose-6-phosphate
           receptor OS=Homo sapiens GN=IGF2R PE=1 SV=2
          Length = 2491

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +3

Query: 60  GMPEFVTSSKCLHYFE 107
           G PEFVT+++C+HYFE
Sbjct: 139 GTPEFVTATECVHYFE 154


>sp|Q07113|MPRI_MOUSE Cation-independent mannose-6-phosphate
           receptor OS=Mus musculus GN=Igf2r PE=1 SV=1
          Length = 2483

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 60  GMPEFVTSSKCLHYFE 107
           G PEFVT++ C+HYFE
Sbjct: 134 GTPEFVTATDCVHYFE 149


>sp|P08169|MPRI_BOVIN Cation-independent mannose-6-phosphate
           receptor OS=Bos taurus GN=IGF2R PE=1 SV=2
          Length = 2499

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 60  GMPEFVTSSKCLHYFE 107
           G PEFVT++ C+HYFE
Sbjct: 145 GTPEFVTATDCVHYFE 160


>sp|O00268|TAF4_HUMAN Transcription initiation factor TFIID subunit
           4 OS=Homo sapiens GN=TAF4 PE=1 SV=2
          Length = 1085

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -3

Query: 268 RQLTVNATDYISHHVLQKSPPTSQRSKWVRAQMGSSVVLKNRTKN*ASVT 119
           RQLT ++  +I     Q  PPTSQ +  + A + SS V +   K  A+VT
Sbjct: 665 RQLTPDSAAFIQQSQQQPPPPTSQATTALTAVVLSSSVQRTAGKTAATVT 714
tr_hit_id Q95MJ2
Definition tr|Q95MJ2|Q95MJ2_MACRG Mannose-6-phosphate/insulin-like growth factor II receptor (Fragment) OS=Macropus rufogriseus
Align length 21
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945021|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_P06, 5'
         (339 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q95MJ2|Q95MJ2_MACRG Mannose-6-phosphate/insulin-like growth f...    34   4.2  
tr|Q4SGS4|Q4SGS4_TETNG Chromosome 14 SCAF14590, whole genome sho...    33   9.3  
tr|Q4SGS3|Q4SGS3_TETNG Chromosome 14 SCAF14590, whole genome sho...    33   9.3  
tr|Q9N170|Q9N170_DIDMA Mannose 6 phosphate/insulin-like growth f...    33   9.3  
tr|Q95MJ0|Q95MJ0_TUPGL Mannose-6-phosphate/insulin-like growth f...    33   9.3  
tr|Q95LC8|Q95LC8_DIDMA Mannose-6-phosphate/insulin-like growth f...    33   9.3  

>tr|Q95MJ2|Q95MJ2_MACRG Mannose-6-phosphate/insulin-like growth
           factor II receptor (Fragment) OS=Macropus rufogriseus
           GN=m6p/igf2r PE=2 SV=1
          Length = 2358

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +3

Query: 60  GMPEFVTSSKCLHYFEVASSV 122
           G PEFVTS++C+HYFE  ++V
Sbjct: 72  GTPEFVTSTECVHYFEWRTTV 92


>tr|Q4SGS4|Q4SGS4_TETNG Chromosome 14 SCAF14590, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00018498001 PE=4 SV=1
          Length = 2493

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 30  TFSNAAGA*YGMPEFVTSSKCLHYFE 107
           +FS   G   G PEFV  S+C+HYFE
Sbjct: 83  SFSFLCGKTMGTPEFVAVSQCVHYFE 108


>tr|Q4SGS3|Q4SGS3_TETNG Chromosome 14 SCAF14590, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00018499001 PE=4 SV=1
          Length = 1389

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 30  TFSNAAGA*YGMPEFVTSSKCLHYFE 107
           +FS   G   G PEFV  S+C+HYFE
Sbjct: 83  SFSFLCGKTMGTPEFVAVSQCVHYFE 108


>tr|Q9N170|Q9N170_DIDMA Mannose 6 phosphate/insulin-like growth
           factor 2 receptor (Fragment) OS=Didelphis marsupialis
           virginiana PE=2 SV=1
          Length = 550

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +3

Query: 60  GMPEFVTSSKCLHYFEVASSV 122
           G PEFVTS+ C+HYFE  ++V
Sbjct: 86  GTPEFVTSTGCVHYFEWRTTV 106


>tr|Q95MJ0|Q95MJ0_TUPGL Mannose-6-phosphate/insulin-like growth
           factor II receptor (Fragment) OS=Tupaia glis
           GN=m6p/igf2r PE=2 SV=1
          Length = 2425

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +3

Query: 60  GMPEFVTSSKCLHYFEVASSV 122
           G PEFVT+++C+HYFE  ++V
Sbjct: 84  GTPEFVTATECVHYFEWKTAV 104


>tr|Q95LC8|Q95LC8_DIDMA Mannose-6-phosphate/insulin-like growth
           factor II receptor OS=Didelphis marsupialis virginiana
           GN=m6p/igf2r PE=2 SV=1
          Length = 2511

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +3

Query: 60  GMPEFVTSSKCLHYFEVASSV 122
           G PEFVTS+ C+HYFE  ++V
Sbjct: 154 GTPEFVTSTGCVHYFEWRTTV 174