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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945023
Clone id YMU02A01NGRL0007_P10
Library
Length 405
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_P10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGTGTTGTACGAGCAAAATTCAGAAAAAATTTACCACCCAGCTCTTTGGGTGGAAGGGTT
CGCGTCTTTATGTATCCAAGCCGAATTTGAGGGGCCAAGGAAGGCTGGCTGGAGAGAATG
ACTCTCCTACAGGCTTCATGAAAACTCTTCTATTAGGCTTGCAGCCTATTTTCTCACAGC
TGCTATTCTAGAAGTGTTATGGTTATTCTACCCTGGGGTATGATAACCAGTGAAAGACAA
TTGACTTTTGTTAATGTTGCGGGATCTTAGTCAGTTACGACCGGATTACCTCCAATGAGT
TTGTTCTTTTTTGTGAAACTAGCAAATGTTGGAACTCTTCTGGGAAACTTCTGAATTATG
TCTGGTTATCCATCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9C912
Definition sp|Q9C912|R35A3_ARATH 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana
Align length 29
Score (bit) 50.8
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945023|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_P10, 5'
         (376 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9C912|R35A3_ARATH 60S ribosomal protein L35a-3 OS=Arabidopsi...    51   2e-06
sp|Q9LMK0|R35A1_ARATH 60S ribosomal protein L35a-1 OS=Arabidopsi...    51   2e-06
sp|P51422|R35A4_ARATH 60S ribosomal protein L35a-4 OS=Arabidopsi...    50   5e-06
sp|Q9FZH0|R35A2_ARATH 60S ribosomal protein L35a-2 OS=Arabidopsi...    50   5e-06
sp|Q90YT3|RL35A_ICTPU 60S ribosomal protein L35a OS=Ictalurus pu...    45   9e-05
sp|P02434|RL35A_XENLA 60S ribosomal protein L35a OS=Xenopus laev...    45   1e-04
sp|P04646|RL35A_RAT 60S ribosomal protein L35a OS=Rattus norvegi...    45   1e-04
sp|Q5R8K6|RL35A_PONAB 60S ribosomal protein L35a OS=Pongo abelii...    45   1e-04
sp|O55142|RL35A_MOUSE 60S ribosomal protein L35a OS=Mus musculus...    45   1e-04
sp|P61272|RL35A_MACFA 60S ribosomal protein L35a OS=Macaca fasci...    45   1e-04
sp|P18077|RL35A_HUMAN 60S ribosomal protein L35a OS=Homo sapiens...    45   1e-04
sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a OS=Caenorhabdit...    45   1e-04
sp|Q56JY1|RL35A_BOVIN 60S ribosomal protein L35a OS=Bos taurus G...    45   1e-04
sp|P41056|RL33B_YEAST 60S ribosomal protein L33-B OS=Saccharomyc...    42   0.001
sp|P05744|RL33A_YEAST 60S ribosomal protein L33-A OS=Saccharomyc...    42   0.001
sp|Q55BN7|RL35A_DICDI 60S ribosomal protein L35a OS=Dictyosteliu...    42   0.001
sp|Q9USX4|RL33A_SCHPO 60S ribosomal protein L33-A OS=Schizosacch...    40   0.004
sp|Q9USG6|RL33B_SCHPO 60S ribosomal protein L33-B OS=Schizosacch...    35   0.12 
sp|O48651|ERG1_PANGI Squalene monooxygenase OS=Panax ginseng PE=...    34   0.26 
sp|Q1L8P7|TSP3B_DANRE Thrombospondin-3b OS=Danio rerio GN=thbs3b...    29   6.3  

>sp|Q9C912|R35A3_ARATH 60S ribosomal protein L35a-3 OS=Arabidopsis
           thaliana GN=RPL35AC PE=2 SV=1
          Length = 112

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 23/29 (79%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVRAKF  NLPP S+G RVRVFMYPS I
Sbjct: 84  GVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>sp|Q9LMK0|R35A1_ARATH 60S ribosomal protein L35a-1 OS=Arabidopsis
           thaliana GN=RPL35AA PE=3 SV=1
          Length = 112

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 23/29 (79%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVRAKF  NLPP S+G RVRVFMYPS I
Sbjct: 84  GVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>sp|P51422|R35A4_ARATH 60S ribosomal protein L35a-4 OS=Arabidopsis
           thaliana GN=RPL35AD PE=3 SV=2
          Length = 111

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVR+KF  NLPP S+G RVRVFMYPS I
Sbjct: 83  GVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>sp|Q9FZH0|R35A2_ARATH 60S ribosomal protein L35a-2 OS=Arabidopsis
           thaliana GN=RPL35AB PE=3 SV=1
          Length = 111

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVR+KF  NLPP S+G RVRVFMYPS I
Sbjct: 83  GVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>sp|Q90YT3|RL35A_ICTPU 60S ribosomal protein L35a OS=Ictalurus
           punctatus GN=rpl35a PE=3 SV=1
          Length = 110

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           G+VRAKF  NLPP ++G R+RV +YPSR+
Sbjct: 82  GMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110


>sp|P02434|RL35A_XENLA 60S ribosomal protein L35a OS=Xenopus laevis
           GN=rpl35a PE=3 SV=2
          Length = 110

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           G+VRAKFR NLP  ++G R+RV +YPSRI
Sbjct: 82  GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110


>sp|P04646|RL35A_RAT 60S ribosomal protein L35a OS=Rattus norvegicus
           GN=Rpl35a PE=3 SV=1
          Length = 110

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           G+VRAKFR NLP  ++G R+RV +YPSRI
Sbjct: 82  GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110


>sp|Q5R8K6|RL35A_PONAB 60S ribosomal protein L35a OS=Pongo abelii
           GN=RPL35A PE=3 SV=1
          Length = 110

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           G+VRAKFR NLP  ++G R+RV +YPSRI
Sbjct: 82  GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110


>sp|O55142|RL35A_MOUSE 60S ribosomal protein L35a OS=Mus musculus
           GN=Rpl35a PE=2 SV=2
          Length = 110

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           G+VRAKFR NLP  ++G R+RV +YPSRI
Sbjct: 82  GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110


>sp|P61272|RL35A_MACFA 60S ribosomal protein L35a OS=Macaca
           fascicularis GN=RPL35A PE=3 SV=1
          Length = 110

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           G+VRAKFR NLP  ++G R+RV +YPSRI
Sbjct: 82  GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
tr_hit_id A9SPY5
Definition tr|A9SPY5|A9SPY5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 29
Score (bit) 58.5
E-value 2.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945023|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_P10, 5'
         (376 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SPY5|A9SPY5_PHYPA Predicted protein OS=Physcomitrella paten...    59   2e-07
tr|A9RBL6|A9RBL6_PHYPA Predicted protein OS=Physcomitrella paten...    59   2e-07
tr|A9NPR4|A9NPR4_PICSI Putative uncharacterized protein OS=Picea...    57   5e-07
tr|A9NJU9|A9NJU9_PICSI Putative uncharacterized protein OS=Picea...    57   5e-07
tr|A9S6Q2|A9S6Q2_PHYPA Predicted protein OS=Physcomitrella paten...    56   8e-07
tr|A9S3B3|A9S3B3_PHYPA Predicted protein OS=Physcomitrella paten...    56   8e-07
tr|A9RCB8|A9RCB8_PHYPA Predicted protein OS=Physcomitrella paten...    56   8e-07
tr|B3TLX9|B3TLX9_ELAGV Ribosomal protein L35A OS=Elaeis guineens...    53   7e-06
tr|B6KHD6|B6KHD6_TOXGO 60s ribosomal protein L33-A, putative OS=...    53   7e-06
tr|Q9ATF4|Q9ATF4_CASSA Ribosomal protein L33 OS=Castanea sativa ...    52   1e-05
tr|B6VC50|B6VC50_VERFO 60S ribosomal protein L35a OS=Vernicia fo...    52   1e-05
tr|A9PB30|A9PB30_POPTR Putative uncharacterized protein OS=Popul...    52   1e-05
tr|A9P9L2|A9P9L2_POPTR Putative uncharacterized protein OS=Popul...    52   1e-05
tr|A5C3V1|A5C3V1_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|B7FH49|B7FH49_MEDTR Putative uncharacterized protein OS=Medic...    52   2e-05
tr|B7FGS2|B7FGS2_MEDTR Putative uncharacterized protein OS=Medic...    52   2e-05
tr|Q6I608|Q6I608_ORYSJ Os05g0555800 protein OS=Oryza sativa subs...    51   2e-05
tr|A9PHS4|A9PHS4_POPTR Putative uncharacterized protein OS=Popul...    51   2e-05
tr|A2Y7A6|A2Y7A6_ORYSI Putative uncharacterized protein OS=Oryza...    51   2e-05
tr|B4G0R0|B4G0R0_MAIZE 60S ribosomal protein L33-B OS=Zea mays P...    51   3e-05
tr|B4FT65|B4FT65_MAIZE Putative uncharacterized protein OS=Zea m...    51   3e-05
tr|Q4UBK0|Q4UBK0_THEAN 60S ribosomal protein l35a, putative OS=T...    50   4e-05
tr|Q6K8U8|Q6K8U8_ORYSJ Os02g0785800 protein OS=Oryza sativa subs...    50   6e-05
tr|A6N1J9|A6N1J9_ORYSI 60S ribosomal protein l33-b (Fragment) OS...    50   6e-05
tr|A6N1I6|A6N1I6_ORYSI 60S ribosomal protein l35a OS=Oryza sativ...    50   6e-05
tr|A6N0V2|A6N0V2_ORYSI 60S ribosomal protein l33-b OS=Oryza sati...    50   6e-05
tr|A8U9X2|A8U9X2_SIPNU Putative ribosomal protein L35a (Fragment...    50   6e-05
tr|Q9ATW9|Q9ATW9_MAIZE 60S ribosomal protein L33-B OS=Zea mays G...    50   7e-05
tr|Q8W1C9|Q8W1C9_MAIZE 60S ribosomal protein L33-B OS=Zea mays G...    50   7e-05
tr|B7GCP8|B7GCP8_PHATR Predicted protein OS=Phaeodactylum tricor...    50   7e-05

>tr|A9SPY5|A9SPY5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_187235 PE=4 SV=1
          Length = 111

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVRA+FR NLPPSSLGGRVRVFMYPSRI
Sbjct: 83  GVVRARFRSNLPPSSLGGRVRVFMYPSRI 111


>tr|A9RBL6|A9RBL6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_62171 PE=4 SV=1
          Length = 111

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVRA+FR NLPPSSLGGRVRVFMYPSRI
Sbjct: 83  GVVRARFRSNLPPSSLGGRVRVFMYPSRI 111


>tr|A9NPR4|A9NPR4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 112

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVRAKFR NLPP S+GGRVRVFMYPSRI
Sbjct: 84  GVVRAKFRTNLPPKSMGGRVRVFMYPSRI 112


>tr|A9NJU9|A9NJU9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 112

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVRAKFR NLPP S+GGRVRVFMYPSRI
Sbjct: 84  GVVRAKFRTNLPPKSMGGRVRVFMYPSRI 112


>tr|A9S6Q2|A9S6Q2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_105870 PE=4 SV=1
          Length = 111

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVRA+FR NLPPSSLG RVRVFMYPSRI
Sbjct: 83  GVVRARFRSNLPPSSLGARVRVFMYPSRI 111


>tr|A9S3B3|A9S3B3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162595 PE=4 SV=1
          Length = 111

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVRA+FR NLPPSSLG RVRVFMYPSRI
Sbjct: 83  GVVRARFRNNLPPSSLGARVRVFMYPSRI 111


>tr|A9RCB8|A9RCB8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_106107 PE=4 SV=1
          Length = 111

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVRA+FR NLPPSSLG RVRVFMYPSRI
Sbjct: 83  GVVRARFRNNLPPSSLGARVRVFMYPSRI 111


>tr|B3TLX9|B3TLX9_ELAGV Ribosomal protein L35A OS=Elaeis guineensis
           var. tenera PE=4 SV=1
          Length = 112

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 23/29 (79%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVRAKF+ NLPP S+GG+VRVFMYPS I
Sbjct: 84  GVVRAKFKSNLPPKSMGGKVRVFMYPSNI 112


>tr|B6KHD6|B6KHD6_TOXGO 60s ribosomal protein L33-A, putative
           OS=Toxoplasma gondii ME49 GN=TGME49_049250 PE=4 SV=1
          Length = 112

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 23/29 (79%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           G+VRAKFR NLPPSS+ GRVRVF+YPS I
Sbjct: 84  GIVRAKFRSNLPPSSIAGRVRVFLYPSNI 112


>tr|Q9ATF4|Q9ATF4_CASSA Ribosomal protein L33 OS=Castanea sativa
           PE=4 SV=1
          Length = 112

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 23/29 (79%), Positives = 25/29 (86%)
 Frame = +1

Query: 1   GVVRAKFRKNLPPSSLGGRVRVFMYPSRI 87
           GVVRAKF+ NLPP S+G RVRVFMYPS I
Sbjct: 84  GVVRAKFKSNLPPKSMGARVRVFMYPSNI 112