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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945026
Clone id YMU02A01NGRL0007_P14
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_P14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GAGGCTCGGTATTTTGGTATTCTTCGAGCAGAAGGGAGATGCACCTGACGGTGCGGCATG
CGAGTTGGAAGTTAGAGAGTGCGCTGTGTATACGAGCGGGCGGTAGTTAGCGGAGGCTGA
GTGTGTGTGTGCACAGTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGCAGCAGCAGCAAAGATGACAATAATTGGGCTATTTCGG
AGGTACCAGAGGTGGAATCCAGTTCACCCCACATATGGAGCTTTTTGGGGGATGGGTATT
GGCGTGGGATGTGGAGTTGGATGGGGCCCTGGCTTTGGACCCGAGACAGTTGGCTTCGTG
GGAGGTGGCTGTGGCCTTGGCTTCAGTGTTGGCCTCACCTTCATTGGCTTCGGCATCGGC
CTTCCGGCTAATGGCCTGACAATTCTTCCTTACAATGCTTTAACCTGCATTACTTGTGAG
ACATTCAATTTTGCAAGAGGAGCAGCCCCTGTTGTCGCCAATGTGGGTAATCAGGGATTG
ACCTGTATTTCGCA
■■Homology search results ■■ -
sp_hit_id P42735
Definition sp|P42735|CDI8_ARATH Cadmium-induced protein AS8 OS=Arabidopsis thaliana
Align length 92
Score (bit) 59.3
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945026|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_P14, 5'
         (554 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42735|CDI8_ARATH Cadmium-induced protein AS8 OS=Arabidopsis ...    59   1e-08
sp|Q8N6F8|WBS27_HUMAN Williams-Beuren syndrome chromosomal regio...    34   0.55 
sp|A2AAJ9|OBSCN_MOUSE Obscurin OS=Mus musculus GN=Obscn PE=2 SV=2      31   3.5  
sp|Q0KHT7|Y2666_DROME Probable serine/threonine-protein kinase C...    31   4.6  
sp|Q8DM63|PYRH_THEEB Uridylate kinase OS=Thermosynechococcus elo...    30   6.0  

>sp|P42735|CDI8_ARATH Cadmium-induced protein AS8 OS=Arabidopsis
           thaliana GN=At4g19070 PE=2 SV=1
          Length = 171

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 32/92 (34%), Positives = 37/92 (40%)
 Frame = +1

Query: 217 MTIIGLFRRYQRWNPVHPTYGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 396
           M I G+FRRY++WNPVHPTYGA                                     +
Sbjct: 4   MIIKGIFRRYEKWNPVHPTYGAFWGMGIGIGCGVGWGPGFGPEVIGYVGAGCGVGFSVGI 63

Query: 397 TFIGFGIGLPANGLTILPYNALTCITCETFNF 492
           T  G GIGLP N L   PYN +       FNF
Sbjct: 64  TLAGLGIGLPTNFLLAAPYNTVEATRKGAFNF 95


>sp|Q8N6F8|WBS27_HUMAN Williams-Beuren syndrome chromosomal region
           27 protein OS=Homo sapiens GN=WBSCR27 PE=2 SV=1
          Length = 245

 Score = 33.9 bits (76), Expect = 0.55
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 294 GYWRGMWSWMGPWLWTRDSWLRGRWLW 374
           G W G+ +W    LWT  SWL   W W
Sbjct: 191 GMWEGLVAWPVDRLWTAGSWLPPSWWW 217


>sp|A2AAJ9|OBSCN_MOUSE Obscurin OS=Mus musculus GN=Obscn PE=2 SV=2
          Length = 8891

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 47   DGAACELEVRECAVYTSGR*LAEAECVCAQ 136
            DGA CEL++R+ AV  +G    E  CVC Q
Sbjct: 4531 DGAVCELQIRDLAVEDAG----EYLCVCGQ 4556



 Score = 30.4 bits (67), Expect = 6.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 47   DGAACELEVRECAVYTSGR*LAEAECVCAQ 136
            DGA CELE+R+  V  +G    E  C C Q
Sbjct: 4795 DGAVCELEIRDLTVEDTG----EYSCTCGQ 4820


>sp|Q0KHT7|Y2666_DROME Probable serine/threonine-protein kinase
           CG32666 OS=Drosophila melanogaster GN=CG32666 PE=1 SV=1
          Length = 784

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
 Frame = +3

Query: 276 WSFLGDGYWRGM----WSWMGPWLWTRDSWLRGRWLWPW 380
           WS+ G G   G     W+W   W W       GRW W W
Sbjct: 730 WSWNGIGNGNGNLNLNWNWKWSWNWC----CSGRWKWKW 764


>sp|Q8DM63|PYRH_THEEB Uridylate kinase OS=Thermosynechococcus
           elongatus (strain BP-1) GN=pyrH PE=3 SV=1
          Length = 242

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -3

Query: 129 HTHSASANYRPLVYTAHSLTSNSHAAPSGASPFCSKN 19
           HTH  +  YR L YT H+LT N     S A   C  N
Sbjct: 172 HTHPNARRYRSLTYT-HALTHNLAVMDSTAIALCKDN 207
tr_hit_id A9P2K4
Definition tr|A9P2K4|A9P2K4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 108
Score (bit) 72.8
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945026|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_P14, 5'
         (554 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9P2K4|A9P2K4_PICSI Putative uncharacterized protein OS=Picea...    73   1e-11
tr|A9NRN5|A9NRN5_PICSI Putative uncharacterized protein OS=Picea...    73   1e-11
tr|A9PH05|A9PH05_POPTR Putative uncharacterized protein OS=Popul...    60   8e-08
tr|Q56W67|Q56W67_ARATH Cadmium-induced protein OS=Arabidopsis th...    59   1e-07
tr|A7PYY8|A7PYY8_VITVI Chromosome chr4 scaffold_39, whole genome...    58   3e-07
tr|A5AFE1|A5AFE1_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|A9THY2|A9THY2_PHYPA Predicted protein OS=Physcomitrella paten...    55   2e-06
tr|A7K920|A7K920_9PHYC Putative uncharacterized protein z410R OS...    48   4e-04
tr|Q6ZUN2|Q6ZUN2_HUMAN cDNA FLJ43523 fis, clone PLACE5000282, we...    44   0.006
tr|Q8H5E1|Q8H5E1_ORYSJ Putative cadmium-induced protein OS=Oryza...    41   0.037
tr|Q0D8N1|Q0D8N1_ORYSJ Os07g0143600 protein OS=Oryza sativa subs...    41   0.037
tr|B8B7E5|B8B7E5_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.037
tr|A3BGI3|A3BGI3_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.037
tr|Q2JLS5|Q2JLS5_SYNJB Pentapeptide repeat protein OS=Synechococ...    39   0.14 
tr|A9S9C8|A9S9C8_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.14 
tr|A3DL91|A3DL91_STAMF Putative uncharacterized protein OS=Staph...    39   0.14 
tr|A7IUT8|A7IUT8_PBCVM Putative uncharacterized protein m558R OS...    39   0.19 
tr|B4KTE3|B4KTE3_DROMO GI19536 OS=Drosophila mojavensis GN=GI195...    39   0.19 
tr|A7T2G6|A7T2G6_NEMVE Predicted protein (Fragment) OS=Nematoste...    39   0.24 
tr|Q2JVE4|Q2JVE4_SYNJA Pentapeptide repeat family protein OS=Syn...    38   0.32 
tr|B4F851|B4F851_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.32 
tr|Q4TA56|Q4TA56_TETNG Chromosome undetermined SCAF7448, whole g...    37   0.92 
tr|B8EQ29|B8EQ29_METSI Putative uncharacterized protein OS=Methy...    37   0.92 
tr|B4LMM5|B4LMM5_DROVI GJ21106 OS=Drosophila virilis GN=GJ21106 ...    37   0.92 
tr|B2SQD3|B2SQD3_XANOP Putative uncharacterized protein OS=Xanth...    36   1.2  
tr|B1XY15|B1XY15_LEPCP Putative uncharacterized protein OS=Lepto...    35   2.0  
tr|B7PG79|B7PG79_IXOSC Putative uncharacterized protein (Fragmen...    35   2.0  
tr|Q1VXK5|Q1VXK5_9FLAO Rhs family protein OS=Psychroflexus torqu...    34   4.6  
tr|A4H3P3|A4H3P3_LEIBR Putative uncharacterized protein OS=Leish...    34   4.6  
tr|Q020F0|Q020F0_SOLUE Putative uncharacterized protein OS=Solib...    34   6.0  

>tr|A9P2K4|A9P2K4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 211

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
 Frame = +1

Query: 217 MTIIGLFRRYQRWNPVHPTYGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 396
           MTI  LF+RY+RWNPVHPTYGA                                     +
Sbjct: 13  MTIANLFKRYERWNPVHPTYGAFWGLGIGVGCGVGWGPGFGPEVIGYVGSGCGVGFSVGV 72

Query: 397 TFIGFGIGLPANGLTILPYNALTCITCETFNFAR-GAAPVVANVGNQG 537
           T +GFG+GLPA+GLT +PYN ++        FA+  A P +A++   G
Sbjct: 73  TLVGFGVGLPASGLTCVPYNVVSATGYGMIEFAKYNAFPAIAHIAGLG 120


>tr|A9NRN5|A9NRN5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 211

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
 Frame = +1

Query: 217 MTIIGLFRRYQRWNPVHPTYGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 396
           MTI  LF+RY+RWNPVHPTYGA                                     +
Sbjct: 13  MTIANLFKRYERWNPVHPTYGAFWGLGIGVGCGVGWGPGFGPEVIGYVGSGCGVGFSVGV 72

Query: 397 TFIGFGIGLPANGLTILPYNALTCITCETFNFAR-GAAPVVANVGNQG 537
           T +GFG+GLPA+GLT +PYN ++        FA+  A P +A++   G
Sbjct: 73  TLVGFGVGLPASGLTCVPYNVVSATGYGMIEFAKYNAFPAIAHIAGLG 120


>tr|A9PH05|A9PH05_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 176

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 33/82 (40%), Positives = 38/82 (46%)
 Frame = +1

Query: 217 MTIIGLFRRYQRWNPVHPTYGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 396
           M I GL RRY+RWNPVHPT GA                                     +
Sbjct: 1   MIIKGLCRRYERWNPVHPTSGAFWGMGIGIGCGVGWGPGFGPEAIGYVGAGCGVGFSVGI 60

Query: 397 TFIGFGIGLPANGLTILPYNAL 462
           TF+GFGIGLPAN L  +PYNA+
Sbjct: 61  TFVGFGIGLPANYLFQVPYNAI 82


>tr|Q56W67|Q56W67_ARATH Cadmium-induced protein OS=Arabidopsis
           thaliana GN=At4g19070 PE=2 SV=1
          Length = 168

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 32/92 (34%), Positives = 37/92 (40%)
 Frame = +1

Query: 217 MTIIGLFRRYQRWNPVHPTYGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 396
           M I G+FRRY++WNPVHPTYGA                                     +
Sbjct: 1   MIIKGIFRRYEKWNPVHPTYGAFWGMGIGIGCGVGWGPGFGPEVIGYVGAGCGVGFSVGI 60

Query: 397 TFIGFGIGLPANGLTILPYNALTCITCETFNF 492
           T  G GIGLP N L   PYN +       FNF
Sbjct: 61  TLAGLGIGLPTNFLLAAPYNTVEATRKGAFNF 92


>tr|A7PYY8|A7PYY8_VITVI Chromosome chr4 scaffold_39, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026661001
           PE=4 SV=1
          Length = 180

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 38/112 (33%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
 Frame = +1

Query: 217 MTIIGLFRRYQRWNPVHPTYGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 396
           M I GLFRRY+RWNPVHPT GA                                     +
Sbjct: 1   MIIKGLFRRYERWNPVHPTSGAFWGMGIGIGCGVGWGPGFGPEVIGYVGAGCGVGFSVGI 60

Query: 397 TFIGFGIGLPANGLTILPYNALTCITCETFNFARGAAPV-VANVGNQGLTCI 549
           T  G GIGLPAN L  +PYNA          F R +  + + N    GL  I
Sbjct: 61  TLAGVGIGLPANCLIEVPYNAFIATRNGALEFTRMSGLLSMGNAAGDGLNNI 112


>tr|A5AFE1|A5AFE1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_014193 PE=4 SV=1
          Length = 877

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 38/112 (33%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
 Frame = +1

Query: 217 MTIIGLFRRYQRWNPVHPTYGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 396
           M I GLFRRY+RWNPVHPT GA                                     +
Sbjct: 656 MIIKGLFRRYERWNPVHPTSGAFWGMGIGIGCGVGWGPGFGPEVIGYVGAGCGVGFSVGI 715

Query: 397 TFIGFGIGLPANGLTILPYNALTCITCETFNFARGAAPV-VANVGNQGLTCI 549
           T  G GIGLPAN L  +PYNA          F R +  + + N    GL  I
Sbjct: 716 TLAGVGIGLPANCLIEVPYNAFIATRNGALEFTRMSGLLSMGNAAGDGLNNI 767


>tr|A9THY2|A9THY2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170171 PE=4 SV=1
          Length = 289

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 31/106 (29%), Positives = 45/106 (42%)
 Frame = +1

Query: 217 MTIIGLFRRYQRWNPVHPTYGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 396
           M + GL + Y+RWNPVHPTYGA                                     +
Sbjct: 1   MAVGGLIQGYKRWNPVHPTYGAFWGVGVGLGCGVGWGPGFGHEVVGFVGSGCGVGLSMGV 60

Query: 397 TFIGFGIGLPANGLTILPYNALTCITCETFNFARGAAPVVANVGNQ 534
           T +G G+GLPA+GL  +P N +T          R  AP+V++  ++
Sbjct: 61  TLVGVGVGLPASGLACVPCNVVTGAGQGVRQMTRVIAPMVSSFASR 106


>tr|A7K920|A7K920_9PHYC Putative uncharacterized protein z410R
           OS=Acanthocystis turfacea Chlorella virus 1 GN=z410R
           PE=4 SV=1
          Length = 129

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 22/54 (40%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
 Frame = +3

Query: 276 WSFLGDGYWRGMWSWMGPWLWTRDSWLRGRWLWPWLQCWP-------HLHWLRH 416
           W     G WRG W W  PW W   SW R    W W  CWP       H  WL H
Sbjct: 38  WRGFWLGCWRGFWLWGRPWFW---SWHRS---WHWCGCWPRRGSWHWHRRWLWH 85



 Score = 35.0 bits (79), Expect = 2.7
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 297 YWRGMWSWMGPWLWTRDSWLRGRWLWPWLQCWPHLHWLRHRP 422
           +W  +  W G WL  R  +  G W   WL CW    WL  RP
Sbjct: 15  FWTWLGCWYGFWLGCRRGFWLGCWRGFWLGCWRGF-WLWGRP 55



 Score = 34.7 bits (78), Expect = 3.5
 Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
 Frame = +3

Query: 276 WSFLGDGYW--RGMWSWMGPWLWT-RDSWL-----RGRWLWPWLQCWPHLHWLRHRPSG* 431
           W   G  +W  R +W W   WLW     WL     R  W W W   W    W R R    
Sbjct: 70  WPRRGSWHWHRRWLWHWHRRWLWHWHRRWLWHWHRRWLWHWHWHGSW---RWSRKRKWSY 126

Query: 432 W 434
           W
Sbjct: 127 W 127


>tr|Q6ZUN2|Q6ZUN2_HUMAN cDNA FLJ43523 fis, clone PLACE5000282,
           weakly similar to Homo sapiens elastin (supravalvular
           aortic stenosis, Williams-Beuren syndrome) (ELN) OS=Homo
           sapiens PE=2 SV=1
          Length = 559

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 24/88 (27%), Positives = 25/88 (28%), Gaps = 42/88 (47%)
 Frame = +3

Query: 276 WSFLGDGYWRGMWSWMGPWLWTRD------------------------------------ 347
           WS+LG   WRG WSW G W W                                       
Sbjct: 469 WSWLGSWSWRGSWSWCGSWRWRGSRHWPWWSCSCSKIRCQGGCQSPAPSCSWAWCWHPWT 528

Query: 348 -SWLRGRWLWPWLQC-----WPHLHWLR 413
            SW R  W W W  C     W    WLR
Sbjct: 529 WSWCRRPWTWSWCWCSWTWSWCWCSWLR 556



 Score = 43.5 bits (101), Expect = 0.008
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = +3

Query: 276 WSFLGDGYWRGMWSWMGPWLWTRDSWLRGRWLWPWLQC 389
           W   G   W G WSW G W W      RG   WPW  C
Sbjct: 463 WCRCGSWSWLGSWSWRGSWSWCGSWRWRGSRHWPWWSC 500


>tr|Q8H5E1|Q8H5E1_ORYSJ Putative cadmium-induced protein OS=Oryza
           sativa subsp. japonica GN=OJ1343_B12.110 PE=4 SV=1
          Length = 238

 Score = 41.2 bits (95), Expect = 0.037
 Identities = 23/82 (28%), Positives = 31/82 (37%)
 Frame = +1

Query: 214 KMTIIGLFRRYQRWNPVHPTYGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 393
           +M I G+  RY+RWNPVHPT G                                      
Sbjct: 71  RMIIKGMLGRYERWNPVHPTVGTFWGIGLGLGCGVGWGPGFGPEVIGYVGAGCGVGFSVG 130

Query: 394 LTFIGFGIGLPANGLTILPYNA 459
           +T  G G+GLP +GL    Y++
Sbjct: 131 VTLAGVGVGLPQHGLIRNQYHS 152