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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945033
Clone id YMU02A01NGRL0007_P23
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_P23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CTCGCTGACATGCGCGAGCTTGCCATTGGGAACTTTCTATGGGAAACATAGAAAGGCTGA
CAAACTATTTACTCTTAGCCTTCTCCATCAGTAAAGGGAACTTGTTACCTACAGATGTGG
ATGTGCAAGGAATTATAGGAAAGTGTCGTTTCTTCCCAACAAGGCTAGTTTATGTTCCAA
TAGCAGTAATTGCAGCAAGATTATGGAATGGAAATGCTGTGAATTGGGCTTGCGCAATGT
GGAAAATGCTTCAGCTGAATTGCTTACAGAAATCTGTTAGCAGAGGTTACTGTACTACCA
GTGGCTTTGTTTACATTATGCACAGGACTTGCATTAATTTGTTGCTCTTTGTTTACATTA
TGCACAAGACTGCATTAATTTGTCGCTTTCTGTTTTGAAAGCAATGACTTCTTTGTATCC
ATTGCTTATGCAACATACTGTAGAAAGAGTTATCTCGTAACTCGTCAAAGGGAGCTGGTT
CTCTGCAGTAAAATCACATAGTTACTACTGTCAGAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
■■Homology search results ■■ -
sp_hit_id Q3UR32
Definition sp|Q3UR32|P2RX3_MOUSE P2X purinoceptor 3 OS=Mus musculus
Align length 36
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945033|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_P23, 5'
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3UR32|P2RX3_MOUSE P2X purinoceptor 3 OS=Mus musculus GN=P2rx...    32   1.3  
sp|O75388|GPR32_HUMAN Probable G-protein coupled receptor 32 OS=...    32   2.3  
sp|P49654|P2RX3_RAT P2X purinoceptor 3 OS=Rattus norvegicus GN=P...    31   2.9  
sp|Q8NGA4|GPC39_HUMAN Putative G-protein coupled receptor GPCR39...    30   5.1  
sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A redu...    30   6.5  
sp|O25475|SECA_HELPY Protein translocase subunit secA OS=Helicob...    30   8.7  
sp|Q9ZL57|SECA_HELPJ Protein translocase subunit secA OS=Helicob...    30   8.7  
sp|Q1CT83|SECA_HELPH Protein translocase subunit secA OS=Helicob...    30   8.7  
sp|Q17XE2|SECA_HELAH Protein translocase subunit secA OS=Helicob...    30   8.7  

>sp|Q3UR32|P2RX3_MOUSE P2X purinoceptor 3 OS=Mus musculus GN=P2rx3
           PE=2 SV=1
          Length = 397

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 81  FSISKGNLLP--TDVDVQGIIGKCRFFPTRLVYVPI 182
           F+  KGNLLP  TD D++    KCRF P +  + PI
Sbjct: 184 FNFEKGNLLPNLTDKDIK----KCRFHPEKAPFCPI 215


>sp|O75388|GPR32_HUMAN Probable G-protein coupled receptor 32
           OS=Homo sapiens GN=GPR32 PE=2 SV=1
          Length = 356

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
 Frame = +2

Query: 248 ASAELLTEIC*QRLLYY----QWLCLHYAQDLH*FVALCLHYAQDCINLSLSVLKAMTSL 415
           A A+ +  +     +YY    QWL   +A  L+       ++A +C+ + +SV + ++ L
Sbjct: 85  ALADFMLSLSLPIAMYYIVSRQWLLGEWACKLYITFVFLSYFASNCLLVFISVDRCISVL 144

Query: 416 YPL--LMQHTVERVIS*LVKGSWFSA 487
           YP+  L   TV+R  S L  G W  A
Sbjct: 145 YPVWALNHRTVQRA-SWLAFGVWLLA 169


>sp|P49654|P2RX3_RAT P2X purinoceptor 3 OS=Rattus norvegicus
           GN=P2rx3 PE=2 SV=1
          Length = 397

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 81  FSISKGNLLP--TDVDVQGIIGKCRFFPTRLVYVPI 182
           F+  KGNLLP  TD D++    +CRF P +  + PI
Sbjct: 184 FNFEKGNLLPNLTDKDIK----RCRFHPEKAPFCPI 215


>sp|Q8NGA4|GPC39_HUMAN Putative G-protein coupled receptor GPCR39
           OS=Homo sapiens PE=5 SV=2
          Length = 272

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
 Frame = +2

Query: 248 ASAELLTEIC*QRLLYY----QWLCLHYAQDLH*FVALCLHYAQDCINLSLSVLKAMTSL 415
           A A+ +  +    L+YY    QWL   +A  L+           +C+ + +SV + ++ L
Sbjct: 85  ALADFMLSLSLPILVYYIVSRQWLLGEWACKLYTGFVFLTFSTSNCLLVLISVDRCISVL 144

Query: 416 YPL-LMQHTVERVIS*LVKGSWFSA 487
           YP+  + H  E+  S L  G W  A
Sbjct: 145 YPVWALNHRTEQRASWLAFGVWLLA 169


>sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A
           reductase 2 OS=Gossypium hirsutum GN=HMG2 PE=3 SV=1
          Length = 628

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 105 LPTD-VDVQGIIGKCRFFPTRLVYVPIAVIAARLWNGNAVNWACAMWKMLQLNCLQKSVS 281
           LP D  D + I+G+C   P   V +P+ +    L NG   +   A  +     CL  S +
Sbjct: 260 LPLDGFDYESILGQCCEMPVGYVQIPVGIAGPLLLNGREYSVPMATTE----GCLVASTN 315

Query: 282 RG 287
           RG
Sbjct: 316 RG 317


>sp|O25475|SECA_HELPY Protein translocase subunit secA
           OS=Helicobacter pylori GN=secA PE=3 SV=1
          Length = 865

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 469 FDELRDNSFYSMLHKQWIQRSHCF 398
           FD LRDN  YS+ HK  +Q+SH F
Sbjct: 191 FDYLRDNMKYSLEHK--VQKSHAF 212


>sp|Q9ZL57|SECA_HELPJ Protein translocase subunit secA
           OS=Helicobacter pylori J99 GN=secA PE=3 SV=1
          Length = 865

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 469 FDELRDNSFYSMLHKQWIQRSHCF 398
           FD LRDN  YS+ HK  +Q+SH F
Sbjct: 191 FDYLRDNMKYSLEHK--VQKSHAF 212


>sp|Q1CT83|SECA_HELPH Protein translocase subunit secA
           OS=Helicobacter pylori (strain HPAG1) GN=secA PE=3 SV=1
          Length = 865

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 469 FDELRDNSFYSMLHKQWIQRSHCF 398
           FD LRDN  YS+ HK  +Q+SH F
Sbjct: 191 FDYLRDNMKYSLEHK--VQKSHAF 212


>sp|Q17XE2|SECA_HELAH Protein translocase subunit secA
           OS=Helicobacter acinonychis (strain Sheeba) GN=secA PE=3
           SV=2
          Length = 865

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 469 FDELRDNSFYSMLHKQWIQRSHCF 398
           FD LRDN  YS+ HK  +Q+SH F
Sbjct: 191 FDYLRDNMKYSLEHK--VQKSHAF 212
tr_hit_id A5BN30
Definition tr|A5BN30|A5BN30_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 71
Score (bit) 38.5
E-value 0.19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945033|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_P23, 5'
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BN30|A5BN30_VITVI Putative uncharacterized protein OS=Vitis...    39   0.19 
tr|Q4WW76|Q4WW76_ASPFU Phosphorylase, putative OS=Aspergillus fu...    33   6.4  
tr|B0Y2M6|B0Y2M6_ASPFC Phosphorylase, putative OS=Aspergillus fu...    33   6.4  

>tr|A5BN30|A5BN30_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003992 PE=4 SV=1
          Length = 546

 Score = 38.5 bits (88), Expect = 0.19
 Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 102 LLPTDVDVQGIIGKCRFFPTRLVYVPIAV-IAARLWNGNAVNWACAMWKMLQLNCLQKSV 278
           LLP   DV GIIG   F+P   VY P+ + IA R      V W C  ++ML L CL  S+
Sbjct: 466 LLPFFNDVLGIIGAFAFWPL-AVYFPVEMYIAQRRIPKWGVKWTC--FQMLSLACLMISI 522

Query: 279 SRGYCTTSGFV 311
             G  + +G V
Sbjct: 523 VAGIGSIAGVV 533


>tr|Q4WW76|Q4WW76_ASPFU Phosphorylase, putative OS=Aspergillus
           fumigatus GN=AFUA_5G14690 PE=4 SV=1
          Length = 273

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 95  RELVTYRCG----CARNYRKVSFLPNKASLCSNSSNCSKIMEWKCCELGLR 235
           R LV Y CG     +RN++ V  LP  A L  +  NC    EW     GLR
Sbjct: 114 RHLVIYNCGPIAGASRNHKHVQILPRPAHLFPDDPNCDP--EWIPFRYGLR 162


>tr|B0Y2M6|B0Y2M6_ASPFC Phosphorylase, putative OS=Aspergillus
           fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163)
           GN=AFUB_062360 PE=4 SV=1
          Length = 273

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 95  RELVTYRCG----CARNYRKVSFLPNKASLCSNSSNCSKIMEWKCCELGLR 235
           R LV Y CG     +RN++ V  LP  A L  +  NC    EW     GLR
Sbjct: 114 RHLVIYNCGPIAGASRNHKHVQILPRPAHLFPDDPNCDP--EWIPFRYGLR 162