NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945047
Clone id YMU02A01NGRL0008_A17
Library
Length 759
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_A17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ATTTTGTTCGAGAGCTCATCTCGAGCTAACGCGTGCGAGCCCTTCGTCTGTGCGATTCTA
TCGCTTGCTAGGGTAGAGCTTCCATGGCGTCCTTGGCCAGCGTGTCTTTCCAAACAGCTT
CCTTCCTGGCATCGCCCGCGTCGGCTTCTTTGCGCCGCAGCAACAGCGGCAGCGGGGCTT
TGCAGGTATCATCTGTGGGTCCTCGTCCATGTCCATCTCTACGCTTGCGTTTCGTGGCCA
TGGCGACCCCTACAGATATGAATGACAAGCTTTCTCAGAGCATCAAGGAGGCAGAAGAGG
TATGTGTGGCAGATAACGGATCGGGTGAGTGCGCAGCTGCTTGGGATGAGGTGGAGGAGA
TATCTGCAGAGATTGCCCACAAGCGCGTCAAGCAGTCTGAGACTAAGGATCCTCTTGAAG
AGTTTTGCAAGGATGCTCCAGAAACTGATGAATGCAGGGTCTATGAAGATTAGGTTACCT
GCAACCTGGGCAAGGTTCTCCATTCACCTTTACTTTACTAGAATGTAAGTAAAGTGCTGC
TTGATTGTATATTGATGACACACTTAATTGGAGTAATTTTCCCTTATCCCATTAGACACA
TCATGGCTCTGTTGTTTTGGCTAATGGTTGCCGGATGCTGGCTGGCCGATCTTTCACTCA
AAATGTTAGCCCAAATTTTGTTCGGGAATTTATGAAAGTGGGGATAAATTGTTTTACCGG
GGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A6Q0K5
Definition sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii
Align length 75
Score (bit) 87.4
E-value 7.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945047|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_A17, 5'
         (709 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas ...    87   7e-17
sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B,...    37   0.10 
sp|O45160|U376B_CAEEL UPF0376 protein C17B7.2 OS=Caenorhabditis ...    34   0.68 
sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B,...    34   0.68 
sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, c...    34   0.88 
sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related pr...    32   4.4  

>sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas
           reinhardtii GN=cp12 PE=1 SV=1
          Length = 80

 Score = 87.4 bits (215), Expect = 7e-17
 Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
 Frame = +3

Query: 255 DMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKR--VKQSET-KDPLEEF 425
           D+N K+  ++KEAE+ C A   S +CA AWD VEE+SA ++HK+  VK   T  DPLE F
Sbjct: 7   DLNKKVQDAVKEAEDAC-AKGTSADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAF 65

Query: 426 CKDAPETDECRVYED 470
           CKDAP+ DECRVYED
Sbjct: 66  CKDAPDADECRVYED 80


>sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B,
           chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1
          Length = 451

 Score = 37.0 bits (84), Expect = 0.10
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +3

Query: 408 DPLEEFCKDAPETDECRVYE 467
           DPLE+FCKD P  +EC++YE
Sbjct: 432 DPLEDFCKDNPADEECKLYE 451


>sp|O45160|U376B_CAEEL UPF0376 protein C17B7.2 OS=Caenorhabditis
           elegans GN=C17B7.2 PE=1 SV=1
          Length = 335

 Score = 34.3 bits (77), Expect = 0.68
 Identities = 26/95 (27%), Positives = 42/95 (44%)
 Frame = +3

Query: 270 LSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPETD 449
           ++Q+  E ++   + N +  C +AWD   E   E     + + + K+ L+E CKD    D
Sbjct: 83  VTQNFTECDKKLESKNST--CYSAWDPFPENFEE----ELDEKKKKEMLQENCKDYFGKD 136

Query: 450 ECRVYED*VTCNLGKVLHSPLLY*NVSKVLLDCIL 554
            C   E   TC   + +     +  V  VL DC L
Sbjct: 137 NCMKKEITETCGEDEWVKFRAQFIGVGNVLSDCDL 171


>sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B,
           chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2
          Length = 447

 Score = 34.3 bits (77), Expect = 0.68
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 408 DPLEEFCKDAPETDECRVYE 467
           DPLE+FCK  P  +EC+VY+
Sbjct: 428 DPLEDFCKTNPADEECKVYD 447


>sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B,
           chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2
          Length = 451

 Score = 33.9 bits (76), Expect = 0.88
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 408 DPLEEFCKDAPETDECRVYE 467
           DPLE+FC+  P  +EC+VYE
Sbjct: 432 DPLEDFCETNPADEECKVYE 451


>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein
            2 OS=Homo sapiens GN=LRP2 PE=1 SV=3
          Length = 4655

 Score = 31.6 bits (70), Expect = 4.4
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +3

Query: 291  AEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKD------PLEEFCKDAPETDE 452
            + EVC   NG  +C    DE EE   +   K   + E K       P +  C DA   D+
Sbjct: 3899 SHEVC---NGVDDCGDGTDETEEHCRKPTPKPCTEYEYKCGNGHCIPHDNVCDDA---DD 3952

Query: 453  CRVYED*VTCNLGK 494
            C  + D + CN GK
Sbjct: 3953 CGDWSDELGCNKGK 3966
tr_hit_id Q9FP25
Definition tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert sequence OS=Oryza sativa subsp. japonica
Align length 76
Score (bit) 108.0
E-value 3.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945047|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_A17, 5'
         (709 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert seque...   108   3e-22
tr|A2WNX6|A2WNX6_ORYSI Putative uncharacterized protein OS=Oryza...   108   3e-22
tr|Q10MJ5|Q10MJ5_ORYSJ Os03g0306800 protein OS=Oryza sativa subs...   102   2e-20
tr|A2XFU0|A2XFU0_ORYSI Putative uncharacterized protein OS=Oryza...   102   2e-20
tr|B7XB92|B7XB92_FAGCR Chloroplast protein 12 OS=Fagus crenata G...   102   3e-20
tr|A9PIU1|A9PIU1_POPJC Putative uncharacterized protein OS=Popul...   101   4e-20
tr|A9NL08|A9NL08_PICSI Putative uncharacterized protein OS=Picea...   100   9e-20
tr|A9PHK5|A9PHK5_POPTR Putative uncharacterized protein OS=Popul...    97   8e-19
tr|B6U3H3|B6U3H3_MAIZE CP12-1 OS=Zea mays PE=2 SV=1                    97   1e-18
tr|B6SXI1|B6SXI1_MAIZE CP12-1 OS=Zea mays PE=2 SV=1                    97   1e-18
tr|Q2WBV8|Q2WBV8_CYNSC Chloroplast protein 12 (Fragment) OS=Cyna...    97   1e-18
tr|O24136|O24136_TOBAC CP12 (Chloroplast protein 12) OS=Nicotian...    97   1e-18
tr|B7FGI5|B7FGI5_MEDTR Putative uncharacterized protein OS=Medic...    96   2e-18
tr|Q5QET3|Q5QET3_ARAHY Auxin-induced putative CP12 domain-contai...    94   7e-18
tr|A7QEC8|A7QEC8_VITVI Chromosome chr1 scaffold_84, whole genome...    94   7e-18
tr|Q9LZP9|Q9LZP9_ARATH CP12 protein-like protein OS=Arabidopsis ...    93   2e-17
tr|Q8LC81|Q8LC81_ARATH CP12 protein-like protein OS=Arabidopsis ...    92   3e-17
tr|O24292|O24292_PEA CP12 OS=Pisum sativum PE=2 SV=1                   92   3e-17
tr|B7FML4|B7FML4_MEDTR Putative uncharacterized protein OS=Medic...    92   4e-17
tr|Q20FC7|Q20FC7_MESVI CP12 OS=Mesostigma viride GN=CP12 PE=2 SV=1     91   6e-17
tr|A1YMY3|A1YMY3_BRACM Putative chloroplast protein CP12 OS=Bras...    91   7e-17
tr|O22914|O22914_ARATH Putative chloroplast protein CP12 OS=Arab...    90   2e-16
tr|A9T5W2|A9T5W2_PHYPA Predicted protein OS=Physcomitrella paten...    89   3e-16
tr|A8IZ71|A8IZ71_CHLRE Small protein associating with GAPDH and ...    87   8e-16
tr|B1XL07|B1XL07_SYNP2 CP12 domain protein OS=Synechococcus sp. ...    87   1e-15
tr|O24360|O24360_SPIOL CP12 OS=Spinacia oleracea PE=2 SV=1             86   2e-15
tr|Q941E3|Q941E3_ARATH At2g47400/T8I13.24 OS=Arabidopsis thalian...    86   3e-15
tr|Q20FC8|Q20FC8_MARPO CP12 OS=Marchantia polymorpha GN=CP12 PE=...    86   3e-15
tr|A7LB48|A7LB48_9BORA Chloroplast protein 12 (Fragment) OS=Arne...    86   3e-15
tr|A9P0H0|A9P0H0_PICSI Putative uncharacterized protein OS=Picea...    84   9e-15

>tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0035H10.18 PE=2 SV=1
          Length = 124

 Score =  108 bits (271), Expect = 3e-22
 Identities = 48/76 (63%), Positives = 59/76 (77%)
 Frame = +3

Query: 243 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 422
           ATP D++DK+S+SI +A+E C  D  SGECAAAWDEVEE+SA  +H R K  ET DPLE 
Sbjct: 49  ATPPDISDKMSESIDKAKEACAEDTASGECAAAWDEVEELSAAASHARDKLKETSDPLEA 108

Query: 423 FCKDAPETDECRVYED 470
           +CKD PETDECR Y++
Sbjct: 109 YCKDNPETDECRTYDN 124


>tr|A2WNX6|A2WNX6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01556 PE=4 SV=1
          Length = 124

 Score =  108 bits (271), Expect = 3e-22
 Identities = 48/76 (63%), Positives = 59/76 (77%)
 Frame = +3

Query: 243 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 422
           ATP D++DK+S+SI +A+E C  D  SGECAAAWDEVEE+SA  +H R K  ET DPLE 
Sbjct: 49  ATPPDISDKMSESIDKAKEACAEDTASGECAAAWDEVEELSAAASHARDKLKETSDPLEA 108

Query: 423 FCKDAPETDECRVYED 470
           +CKD PETDECR Y++
Sbjct: 109 YCKDNPETDECRTYDN 124


>tr|Q10MJ5|Q10MJ5_ORYSJ Os03g0306800 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0306800 PE=2 SV=1
          Length = 131

 Score =  102 bits (255), Expect = 2e-20
 Identities = 55/99 (55%), Positives = 68/99 (68%), Gaps = 4/99 (4%)
 Frame = +3

Query: 186 VSSVGPRPCPSL-RLRFVAMA---TPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEV 353
           VS  G R   +L RL  V  A   TP ++  K+S+SIK+AEE C  D   GECAAAWDEV
Sbjct: 34  VSFAGRRQGRALGRLAVVVAAGSPTPPELAQKVSESIKQAEETCAGDPEGGECAAAWDEV 93

Query: 354 EEISAEIAHKRVKQSETKDPLEEFCKDAPETDECRVYED 470
           EE+SA  +H R ++ ++ DPLEE+CKD PETDECR YED
Sbjct: 94  EELSAAASHARDRKKDS-DPLEEYCKDNPETDECRTYED 131


>tr|A2XFU0|A2XFU0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11237 PE=4 SV=1
          Length = 131

 Score =  102 bits (255), Expect = 2e-20
 Identities = 55/99 (55%), Positives = 68/99 (68%), Gaps = 4/99 (4%)
 Frame = +3

Query: 186 VSSVGPRPCPSL-RLRFVAMA---TPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEV 353
           VS  G R   +L RL  V  A   TP ++  K+S+SIK+AEE C  D   GECAAAWDEV
Sbjct: 34  VSFAGRRQGRALGRLAVVVAAGSPTPPELAQKVSESIKQAEETCAGDPEGGECAAAWDEV 93

Query: 354 EEISAEIAHKRVKQSETKDPLEEFCKDAPETDECRVYED 470
           EE+SA  +H R ++ ++ DPLEE+CKD PETDECR YED
Sbjct: 94  EELSAAASHARDRKKDS-DPLEEYCKDNPETDECRTYED 131


>tr|B7XB92|B7XB92_FAGCR Chloroplast protein 12 OS=Fagus crenata
           GN=CP12 PE=2 SV=1
          Length = 130

 Score =  102 bits (253), Expect = 3e-20
 Identities = 49/85 (57%), Positives = 65/85 (76%)
 Frame = +3

Query: 216 SLRLRFVAMATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQ 395
           S+++R V+ A P  ++DK+++SIK+AEE C  D  SGEC AAWDEVEE+SA  +H R K+
Sbjct: 48  SMQVRPVS-AAPEKISDKVAESIKDAEEACAGDPASGECVAAWDEVEELSAAASHARDKK 106

Query: 396 SETKDPLEEFCKDAPETDECRVYED 470
            +  DPLEE+CKD PET+ECR YED
Sbjct: 107 -KGSDPLEEYCKDNPETEECRTYED 130


>tr|A9PIU1|A9PIU1_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 127

 Score =  101 bits (252), Expect = 4e-20
 Identities = 53/101 (52%), Positives = 65/101 (64%)
 Frame = +3

Query: 168 GSGALQVSSVGPRPCPSLRLRFVAMATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWD 347
           GSG +QV  V               A P  +++K+ +SIKEAEE C  D  SGECAAAWD
Sbjct: 42  GSGRVQVRPV--------------RAAPEGISEKVEKSIKEAEEACSGDAASGECAAAWD 87

Query: 348 EVEEISAEIAHKRVKQSETKDPLEEFCKDAPETDECRVYED 470
           EVEE+SA  +H + K+ +  DPLEE+CKD PETDECR YED
Sbjct: 88  EVEELSAAASHAKDKK-KGSDPLEEYCKDNPETDECRTYED 127


>tr|A9NL08|A9NL08_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 141

 Score =  100 bits (249), Expect = 9e-20
 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 4/86 (4%)
 Frame = +3

Query: 225 LRFVAMATPT----DMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVK 392
           ++ VAM++PT    ++++ + +SIK+A E C  D+ SGECAA+WDEVEE+SA  +H R K
Sbjct: 57  IQVVAMSSPTPAKGNISEVVEESIKKAIETCAEDSTSGECAASWDEVEELSAARSHMREK 116

Query: 393 QSETKDPLEEFCKDAPETDECRVYED 470
             + KDPLEEFCKD PETDECR YED
Sbjct: 117 -DKAKDPLEEFCKDNPETDECRTYED 141


>tr|A9PHK5|A9PHK5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 127

 Score = 97.4 bits (241), Expect = 8e-19
 Identities = 45/76 (59%), Positives = 57/76 (75%)
 Frame = +3

Query: 243 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 422
           A P  +++K+ +SIK+AE  C  D  SGECAAAWDEVEE+SA  +H + K+ +  DPLEE
Sbjct: 53  AAPDSISEKVEKSIKDAEAACSDDAASGECAAAWDEVEELSAAASHAKDKK-KGSDPLEE 111

Query: 423 FCKDAPETDECRVYED 470
           +CKD PETDECR YED
Sbjct: 112 YCKDNPETDECRTYED 127


>tr|B6U3H3|B6U3H3_MAIZE CP12-1 OS=Zea mays PE=2 SV=1
          Length = 140

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 43/79 (54%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
 Frame = +3

Query: 243 ATPTDMNDKLSQSIKEAEEVCVADN-GSGECAAAWDEVEEISAEIAHKR--VKQSETKDP 413
           ATP +++DK+S+SIK+AEE C  D  G  ECAAAWDEVEE+SA  +H R  +K++   DP
Sbjct: 62  ATPPEISDKVSESIKQAEETCADDQKGDAECAAAWDEVEELSATASHARDSLKETNANDP 121

Query: 414 LEEFCKDAPETDECRVYED 470
           LE++CKD P+++ECR+Y++
Sbjct: 122 LEKYCKDNPDSEECRIYDN 140


>tr|B6SXI1|B6SXI1_MAIZE CP12-1 OS=Zea mays PE=2 SV=1
          Length = 144

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 43/79 (54%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
 Frame = +3

Query: 243 ATPTDMNDKLSQSIKEAEEVCVADN-GSGECAAAWDEVEEISAEIAHKR--VKQSETKDP 413
           ATP +++DK+S+SIK+AEE C  D  G  ECAAAWDEVEE+SA  +H R  +K++   DP
Sbjct: 66  ATPPEISDKVSESIKQAEETCADDQKGDAECAAAWDEVEELSATASHARDSLKETNANDP 125

Query: 414 LEEFCKDAPETDECRVYED 470
           LE++CKD P+++ECR+Y++
Sbjct: 126 LEKYCKDNPDSEECRIYDN 144