DK945053 [AcEST]

DK945053
Clone id	YMU02A01NGRL0008_B01
Library	YMU02
Length	424
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_B01. 5' end sequence.
Accession	DK945053
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL1Contig3
Sequence	TATCTCGGCTAAATTAACTGAAAGAAAAAAACTTTATCTTCGCAGAAAATATGTGTTTTC TTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGCCACTCATTCATTTCAAGA ACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATACTTGGTTTAA TTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTCTAAGATAGCT GACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAGAGTTGGAATAAATAAAT CCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTCGTTTCAACAA CTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCGAAAAAAAAAAAAAAAAAAAAAAAAA AAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	O43114
Definition	sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length	57
Score (bit)	30.0
E-value	3.7
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK945053\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0008_B01, 5' (395 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 30 3.7 sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 29 8.3 >sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2 Length = 455 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 8/57 (14%) Frame = +3 Query: 177 LISTSGEINKEKNLWVDVDSLIVTKPQRI--------NLGKRVGINKSGFVKIIE 323 L+ T+ +++KE+N+W+++ D + RI ++ + GIN SGF+ ++E Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107 >sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia burgdorferi GN=recB PE=3 SV=1 Length = 1169 Score = 28.9 bits (63), Expect = 8.3 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +3 Query: 147 IVLVPQEILGLISTSGEINKEKNLWVDVDSLIVTKPQRINLGKRVGINKSGFV 311 IVL+ + + LI+ +I EKNLW+ + + +TK Q+I + IN G + Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	Q54CB7
Definition	tr\|Q54CB7\|Q54CB7_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length	55
Score (bit)	32.7
E-value	9.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK945053\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0008_B01, 5' (395 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|Q54CB7\|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty... 33 9.2 >tr\|Q54CB7\|Q54CB7_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1 Length = 955 Score = 32.7 bits (73), Expect = 9.2 Identities = 19/55 (34%), Positives = 28/55 (50%) Frame = +3 Query: 168 ILGLISTSGEINKEKNLWVDVDSLIVTKPQRINLGKRVGINKSGFVKIIEHLF 332 I+G ++ SGE+N E ++ DS +T IN+GK IN S + I F Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796