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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945055
Clone id YMU02A01NGRL0008_B04
Library
Length 290
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_B04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTCGCCATTACGGGGGCTAACCTTGGATGCACCAATGT
GGACTTTGAGATTGAGCAGTGGATTGCCGATGATGCTTACCCTTACGAGCTCTATGCGTA
CCGGGACTCCTGCTCCTCCTCCTCCTCAGCTGTTCGCTCACATGGCAAACGCACCTCTGT
CTTGGATGCATAGGAGTAGCTTCAAGCCCTTTTTTTTGTATGTTGTAGCACATTTTGAAT
AAGGTCTTGTTTGGTGTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P86174
Definition sp|P86174|BEND4_MOUSE BEN domain-containing protein 4 OS=Mus musculus
Align length 32
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945055|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_B04, 5'
         (225 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P86174|BEND4_MOUSE BEN domain-containing protein 4 OS=Mus mus...    30   2.9  
sp|Q99590|SFRIP_HUMAN SFRS2-interacting protein OS=Homo sapiens ...    30   3.8  
sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6 OS=Dro...    29   6.5  
sp|Q5N5A8|LGT_SYNP6 Prolipoprotein diacylglyceryl transferase OS...    29   8.5  
sp|Q31NV9|LGT_SYNE7 Prolipoprotein diacylglyceryl transferase OS...    29   8.5  

>sp|P86174|BEND4_MOUSE BEN domain-containing protein 4 OS=Mus
           musculus GN=Bend4 PE=3 SV=1
          Length = 537

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 52  PMMLTLTSSMRTGTPAPPPPQLFAHMANAPLS 147
           P +L L+ +  +  P PPPP  FA +A  P+S
Sbjct: 40  PSLLELSPARPSPLPPPPPPPPFASLAAVPIS 71


>sp|Q99590|SFRIP_HUMAN SFRS2-interacting protein OS=Homo sapiens
            GN=SFRS2IP PE=1 SV=1
          Length = 1148

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 19   PMWTLRLSSGLPMMLTLT-SSMRTGTPAPPPP 111
            P   L L +G+P+M   T +S+  G P PPPP
Sbjct: 936  PQLPLHLHTGVPLMQVATPTSVSQGLPPPPPP 967


>sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6
           OS=Drosophila melanogaster GN=br PE=1 SV=2
          Length = 880

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 85  TGTPAPPPPQLFAHMANAPLS 147
           TG+P PPPP   +H    PLS
Sbjct: 581 TGSPPPPPPSHHSHFGQHPLS 601


>sp|Q5N5A8|LGT_SYNP6 Prolipoprotein diacylglyceryl transferase
           OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
           SAUG 1402/1) GN=lgt PE=3 SV=1
          Length = 289

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 13  DAPMWTLRLSSGLPMMLTLTSSMRTGTPAPPPPQLFAHMANAPLSWMHRSSFKPFFLY 186
           D  + +L L   +       +S   GTP   P +LF  +   PL+++    F P FLY
Sbjct: 129 DVVVPSLALGQAIGRWGNFFNSEAFGTPTDLPWKLFIPIDRRPLAYIQSEYFHPTFLY 186


>sp|Q31NV9|LGT_SYNE7 Prolipoprotein diacylglyceryl transferase
           OS=Synechococcus elongatus (strain PCC 7942) GN=lgt PE=3
           SV=1
          Length = 289

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 13  DAPMWTLRLSSGLPMMLTLTSSMRTGTPAPPPPQLFAHMANAPLSWMHRSSFKPFFLY 186
           D  + +L L   +       +S   GTP   P +LF  +   PL+++    F P FLY
Sbjct: 129 DVVVPSLALGQAIGRWGNFFNSEAFGTPTDLPWKLFIPIDRRPLAYIQSEYFHPTFLY 186
tr_hit_id Q7XRE8
Definition tr|Q7XRE8|Q7XRE8_ORYSJ OSJNBa0006M15.19 protein (OSJNBa0036B21.2 protein) OS=Oryza sativa subsp. japonica
Align length 26
Score (bit) 39.7
E-value 0.076
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945055|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_B04, 5'
         (225 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XRE8|Q7XRE8_ORYSJ OSJNBa0006M15.19 protein (OSJNBa0036B21.2...    40   0.076
tr|Q01JQ6|Q01JQ6_ORYSA H0523F07.7 protein OS=Oryza sativa GN=H05...    40   0.076
tr|O65660|O65660_ARATH Putative uncharacterized protein AT4g3973...    39   0.13 
tr|Q7XRE7|Q7XRE7_ORYSJ Os04g0456700 protein OS=Oryza sativa subs...    38   0.22 
tr|Q01JQ5|Q01JQ5_ORYSA H0523F07.8 protein OS=Oryza sativa GN=H05...    38   0.22 
tr|B6TMF3|B6TMF3_MAIZE Wound/stress protein OS=Zea mays PE=2 SV=1      38   0.22 
tr|A2YE33|A2YE33_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.22 
tr|A2XU59|A2XU59_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.22 
tr|A2XU58|A2XU58_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.22 
tr|B7FGR1|B7FGR1_MEDTR Putative uncharacterized protein OS=Medic...    38   0.29 
tr|Q6ZGP5|Q6ZGP5_ORYSJ Os02g0753300 protein OS=Oryza sativa subs...    37   0.38 
tr|Q67VZ0|Q67VZ0_ORYSJ Os06g0221300 protein OS=Oryza sativa subs...    37   0.38 
tr|A3ABF8|A3ABF8_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.38 
tr|A2YAT4|A2YAT4_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.38 
tr|A2X9Q0|A2X9Q0_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.38 
tr|Q9AXN5|Q9AXN5_BRANA Dehydration stress-induced protein OS=Bra...    37   0.50 
tr|A2EKU5|A2EKU5_TRIVA Putative uncharacterized protein OS=Trich...    36   0.84 
tr|Q7XRE9|Q7XRE9_ORYSJ Os04g0456200 protein OS=Oryza sativa subs...    36   0.84 
tr|Q01JQ7|Q01JQ7_ORYSA H0523F07.6 protein OS=Oryza sativa GN=H05...    36   0.84 
tr|A2XU57|A2XU57_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.84 
tr|A9TAW3|A9TAW3_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   1.9  
tr|Q9SIE7|Q9SIE7_ARATH Expressed protein (Putative uncharacteriz...    35   2.5  
tr|Q8LEG8|Q8LEG8_ARATH Dehydration stress-induced protein OS=Ara...    35   2.5  
tr|Q2V2V3|Q2V2V3_ARATH Uncharacterized protein At5g65158.1 OS=Ar...    34   3.2  
tr|B6T9W1|B6T9W1_MAIZE Wound/stress protein OS=Zea mays PE=2 SV=1      33   5.5  
tr|A9PBQ7|A9PBQ7_POPTR Putative uncharacterized protein OS=Popul...    33   7.1  

>tr|Q7XRE8|Q7XRE8_ORYSJ OSJNBa0006M15.19 protein (OSJNBa0036B21.2
           protein) OS=Oryza sativa subsp. japonica
           GN=OSJNBa0006M15.19 PE=4 SV=2
          Length = 190

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 12  GCTNVDFEIEQWIADDAYPYELYAYR 89
           GC    F++EQW+A DA PY+LYA R
Sbjct: 151 GCAKAAFDVEQWLATDAPPYQLYAER 176


>tr|Q01JQ6|Q01JQ6_ORYSA H0523F07.7 protein OS=Oryza sativa
           GN=H0523F07.7 PE=4 SV=1
          Length = 190

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 12  GCTNVDFEIEQWIADDAYPYELYAYR 89
           GC    F++EQW+A DA PY+LYA R
Sbjct: 151 GCAKAAFDVEQWLATDAPPYQLYAER 176


>tr|O65660|O65660_ARATH Putative uncharacterized protein AT4g39730
           (AT4g39730/T19P19_120) (Dehydration stress-induced
           protein) OS=Arabidopsis thaliana GN=AT4g39730 PE=2 SV=1
          Length = 181

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +3

Query: 15  CTNVDFEIEQWIADDAYPYELYAYRD 92
           C+  DFEIEQW+A D  PYEL A R+
Sbjct: 131 CSTQDFEIEQWLATDTSPYELTAVRN 156


>tr|Q7XRE7|Q7XRE7_ORYSJ Os04g0456700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0006M15.20 PE=2 SV=2
          Length = 193

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 6   NLGCTNVDFEIEQWIADDAYPYELYAYRD 92
           +LGC    F +EQW+A DA PY LYA  D
Sbjct: 144 HLGCAQQLFTVEQWLATDASPYRLYAVVD 172


>tr|Q01JQ5|Q01JQ5_ORYSA H0523F07.8 protein OS=Oryza sativa
           GN=H0523F07.8 PE=4 SV=1
          Length = 193

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 6   NLGCTNVDFEIEQWIADDAYPYELYAYRD 92
           +LGC    F +EQW+A DA PY LYA  D
Sbjct: 144 HLGCAQQLFTVEQWLATDASPYRLYAVVD 172


>tr|B6TMF3|B6TMF3_MAIZE Wound/stress protein OS=Zea mays PE=2 SV=1
          Length = 204

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 6   NLGCTNVDFEIEQWIADDAYPYELYAYRD 92
           +LGC    F +EQW+A DA PY LYA  D
Sbjct: 152 HLGCAQQLFTVEQWLATDASPYRLYAVVD 180


>tr|A2YE33|A2YE33_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23378 PE=4 SV=1
          Length = 194

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 6   NLGCTNVDFEIEQWIADDAYPYELYAYRD 92
           +LGC    F +EQW+A DA PY LYA  D
Sbjct: 143 HLGCAQKLFTVEQWLATDASPYRLYAVVD 171


>tr|A2XU59|A2XU59_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16133 PE=4 SV=1
          Length = 193

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 6   NLGCTNVDFEIEQWIADDAYPYELYAYRD 92
           +LGC    F +EQW+A DA PY LYA  D
Sbjct: 144 HLGCAQQLFTVEQWLATDASPYRLYAVVD 172


>tr|A2XU58|A2XU58_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16132 PE=4 SV=1
          Length = 190

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 12  GCTNVDFEIEQWIADDAYPYELYAYR 89
           GC    F +EQW+A DA PY+LYA R
Sbjct: 151 GCAKAAFGVEQWLATDAPPYQLYAER 176


>tr|B7FGR1|B7FGR1_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 191

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 3   ANLGCTNVDFEIEQWIADDAYPYELYAYRD 92
           A++ C    FE+EQW+A D  PYEL A R+
Sbjct: 125 AHIPCAQQQFEVEQWLATDTSPYELSAIRN 154