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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945065
Clone id YMU02A01NGRL0008_B19
Library
Length 623
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_B19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ATCAGCTGCTGAGGCAAGTGTAAGCATGAACGCTGTGCTCGCGCGAAGCCATCATCATCA
TTGCGGAAGCAGCGGCAGGGAGTGTGGCTATGGAAGCACGGAACTTAAATCGGCGATCCT
GGCCCCGCGCCGCTTCTCCCCTTCCTTCACGACTCCAGATTCTCGCATGAGCACCCTCTT
GTTGGTAGTAAGGGCAGGCAAGGGCAAGCGTCGCTTTGGCGCTGGCATCCCCCAGCCACA
GCACATCCCCTCCTTGACCAAGTTTGAGGATGATGGAAACCCTAAGTTCGTTATCTTTGT
CCGGGATAAGCAACGAGGAACATCTGTGTCATGTGCGACACAAAGTACTCCGCCAGTCAA
TGCGGGTGAAATGGAGGCATTTCCTGATACTGACATGAATGGAAGTGCAAGTGCAAGCTC
TTGTGTCATAAAAAGACCATGGCTAACAAAATTAATGCTTAGTTTATCCGGGTGTGAGAA
GCCCTGGCTGGTTCCCTGGACATCATTTACAATATTTCAGGTTATGTTCCTGTGGTTCTG
TACCTTTTGGCTAGTTGGGTCATGGATAATACCCTTTGCAGCCCATTATGCTGGGTGCAG
CAAAGATACTTTGACACATCGGG
■■Homology search results ■■ -
sp_hit_id Q39VY6
Definition sp|Q39VY6|SYP_GEOMG Prolyl-tRNA synthetase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
Align length 74
Score (bit) 32.3
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945065|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_B19, 5'
         (623 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q39VY6|SYP_GEOMG Prolyl-tRNA synthetase OS=Geobacter metallir...    32   2.0  
sp|P57571|SECY_BUCAI Preprotein translocase subunit secY OS=Buch...    30   7.7  

>sp|Q39VY6|SYP_GEOMG Prolyl-tRNA synthetase OS=Geobacter
           metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
           GN=proS PE=3 SV=1
          Length = 570

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = -3

Query: 513 IVNDVQGTSQGFSHPDKLSINFVS----HGL--FMTQELALALPFMSVSGNASISPALTG 352
           IV  V G   GF+ P  L I  V+     G+  F+T   A  L F +V+     +PAL  
Sbjct: 320 IVERVTGAPVGFAGPVGLKIKIVADLTIQGMKNFVTGGNARDLHFKNVNIGRDFTPALIA 379

Query: 351 GVLCVAHDTDVPRC 310
            +  V H    PRC
Sbjct: 380 DIRNVVHGDPCPRC 393


>sp|P57571|SECY_BUCAI Preprotein translocase subunit secY
           OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
           GN=secY PE=3 SV=1
          Length = 437

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
 Frame = +2

Query: 254 LTKFEDDGNPKFVIFVRDKQRGTSVSCATQST------------PPVNAGEMEAFPDTDM 397
           L  F + G  K V+    +Q+G  +   T ST            P + A  +  FP T +
Sbjct: 233 LVVFMERGQRKIVVHYAQRQQGRRIY-ETPSTHLPLKINMAGVIPAIFASSIVLFPATII 291

Query: 398 NGSASASSCVIKRPWLTKLMLSLSGCEKPWLVPWTSFTIFQVMFLWFCTFW 550
                 S C +   WLTK++  L   +  +L+ + S  +F      FC F+
Sbjct: 292 ------SWCKVNHEWLTKILFYLQPNQFLYLILYISAIVF------FCFFY 330
tr_hit_id A7QGD6
Definition tr|A7QGD6|A7QGD6_VITVI Chromosome undetermined scaffold_91, whole genome shotgun sequence OS=Vitis vinifera
Align length 48
Score (bit) 83.2
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945065|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_B19, 5'
         (623 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QGD6|A7QGD6_VITVI Chromosome undetermined scaffold_91, whol...    83   1e-14
tr|A7QNG0|A7QNG0_VITVI Chromosome chr2 scaffold_132, whole genom...    79   2e-13
tr|A9TMF9|A9TMF9_PHYPA Predicted protein (Fragment) OS=Physcomit...    78   4e-13
tr|B8A1X1|B8A1X1_MAIZE Putative uncharacterized protein OS=Zea m...    77   6e-13
tr|Q654D3|Q654D3_ORYSJ Os06g0505400 protein OS=Oryza sativa subs...    77   8e-13
tr|A2YDD7|A2YDD7_ORYSI Putative uncharacterized protein OS=Oryza...    77   8e-13
tr|Q9FF45|Q9FF45_ARATH Arabidopsis thaliana genomic DNA, chromos...    68   5e-10
tr|Q8VZ58|Q8VZ58_ARATH Putative uncharacterized protein At5g6075...    68   5e-10
tr|A5AX14|A5AX14_VITVI Putative uncharacterized protein OS=Vitis...    59   3e-07
tr|Q00TI5|Q00TI5_OSTTA Homology to unknown gene OS=Ostreococcus ...    44   0.006
tr|A4S924|A4S924_OSTLU Predicted protein (Fragment) OS=Ostreococ...    44   0.008
tr|B8HPL6|B8HPL6_9CHRO Abortive infection protein OS=Cyanothece ...    40   0.11 
tr|A9PH90|A9PH90_POPTR Putative uncharacterized protein OS=Popul...    40   0.11 
tr|Q6K5H8|Q6K5H8_ORYSJ Os02g0600200 protein OS=Oryza sativa subs...    40   0.15 
tr|B8AF05|B8AF05_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.15 
tr|A2X6W5|A2X6W5_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.15 
tr|A9SHC4|A9SHC4_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.25 
tr|B6N3F5|B6N3F5_BRAFL Putative uncharacterized protein OS=Branc...    37   0.73 
tr|B6L9M3|B6L9M3_BRAFL Putative uncharacterized protein OS=Branc...    37   0.73 
tr|B6L9M2|B6L9M2_BRAFL Putative uncharacterized protein OS=Branc...    37   0.73 
tr|A7QBU7|A7QBU7_VITVI Chromosome chr1 scaffold_75, whole genome...    37   0.95 
tr|B6N3F4|B6N3F4_BRAFL Putative uncharacterized protein OS=Branc...    37   0.95 
tr|B4FAM1|B4FAM1_MAIZE Putative uncharacterized protein OS=Zea m...    37   1.2  
tr|Q1YME8|Q1YME8_MOBAS Sodium/alanine symporter OS=Manganese-oxi...    36   2.1  
tr|B2JBR7|B2JBR7_NOSP7 Putative uncharacterized protein OS=Nosto...    35   2.8  
tr|A1S2P8|A1S2P8_SHEAM Putative uncharacterized protein OS=Shewa...    35   4.7  
tr|Q9FXD5|Q9FXD5_ARATH F12A21.16 OS=Arabidopsis thaliana PE=3 SV=1     35   4.7  
tr|Q94A67|Q94A67_ARATH At1g67700/F12A21_30 OS=Arabidopsis thalia...    35   4.7  
tr|Q8LDL0|Q8LDL0_ARATH Putative uncharacterized protein OS=Arabi...    35   4.7  
tr|A0LAB0|A0LAB0_MAGSM O-antigen polymerase OS=Magnetococcus sp....    34   8.0  

>tr|A7QGD6|A7QGD6_VITVI Chromosome undetermined scaffold_91, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037800001 PE=4 SV=1
          Length = 252

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 34/48 (70%), Positives = 38/48 (79%)
 Frame = +2

Query: 479 KPWLVPWTSFTIFQVMFLWFCTFWLVGSWIIPFAAHYAGCSKDTLTHR 622
           KPW VPWT+ TI QVM LW  +FWLVGSWIIPF AH AG  K+T+THR
Sbjct: 17  KPWTVPWTAMTILQVMLLWIASFWLVGSWIIPFLAHKAGFRKETMTHR 64


>tr|A7QNG0|A7QNG0_VITVI Chromosome chr2 scaffold_132, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002513001
           PE=4 SV=1
          Length = 347

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 32/48 (66%), Positives = 38/48 (79%)
 Frame = +2

Query: 479 KPWLVPWTSFTIFQVMFLWFCTFWLVGSWIIPFAAHYAGCSKDTLTHR 622
           KPW+VPWTS TI QVM LW  +FW VGSW+IPF AH  G SK++LT+R
Sbjct: 112 KPWVVPWTSETILQVMLLWIVSFWFVGSWMIPFTAHVVGFSKESLTYR 159


>tr|A9TMF9|A9TMF9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_147720 PE=4 SV=1
          Length = 232

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 34/46 (73%), Positives = 36/46 (78%)
 Frame = +2

Query: 485 WLVPWTSFTIFQVMFLWFCTFWLVGSWIIPFAAHYAGCSKDTLTHR 622
           W VPWT  TIFQVMFLWF  FWLVGSWIIP AA  AG SK +LT+R
Sbjct: 1   WTVPWTGQTIFQVMFLWFAAFWLVGSWIIPIAAQAAGFSKQSLTYR 46


>tr|B8A1X1|B8A1X1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 359

 Score = 77.4 bits (189), Expect = 6e-13
 Identities = 32/46 (69%), Positives = 35/46 (76%)
 Frame = +2

Query: 485 WLVPWTSFTIFQVMFLWFCTFWLVGSWIIPFAAHYAGCSKDTLTHR 622
           W+VPWT  TI QVM LW  TFW VGSWI+P  AH AG SK+TLTHR
Sbjct: 126 WIVPWTGQTIAQVMILWIATFWFVGSWIVPLLAHAAGFSKETLTHR 171


>tr|Q654D3|Q654D3_ORYSJ Os06g0505400 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0026G06.4 PE=4 SV=1
          Length = 366

 Score = 77.0 bits (188), Expect = 8e-13
 Identities = 32/46 (69%), Positives = 35/46 (76%)
 Frame = +2

Query: 485 WLVPWTSFTIFQVMFLWFCTFWLVGSWIIPFAAHYAGCSKDTLTHR 622
           W VPWT  TI QVM LW  TFW VGSWI+PF AH AG SK++LTHR
Sbjct: 133 WTVPWTGKTIAQVMILWIATFWFVGSWIVPFLAHAAGFSKESLTHR 178


>tr|A2YDD7|A2YDD7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23126 PE=4 SV=1
          Length = 366

 Score = 77.0 bits (188), Expect = 8e-13
 Identities = 32/46 (69%), Positives = 35/46 (76%)
 Frame = +2

Query: 485 WLVPWTSFTIFQVMFLWFCTFWLVGSWIIPFAAHYAGCSKDTLTHR 622
           W VPWT  TI QVM LW  TFW VGSWI+PF AH AG SK++LTHR
Sbjct: 133 WTVPWTGKTIAQVMILWIATFWFVGSWIVPFLAHAAGFSKESLTHR 178


>tr|Q9FF45|Q9FF45_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, P1 clone:MUP24 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 312

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 32/73 (43%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = +2

Query: 416 SSCVIKRPWLTKLMLSLSGCEKP----WLVPWTSFTIFQVMFLWFCTFWLVGSWIIPFAA 583
           S C  K  W      +     K     W VPWT  TI QVM LW   FW +GSW+IPF A
Sbjct: 51  SPCTDKTDWKATFQKAADAVLKAIGTRWKVPWTVETIVQVMLLWVAAFWFIGSWMIPFMA 110

Query: 584 HYAGCSKDTLTHR 622
           H +G  K++LT R
Sbjct: 111 HISGFHKESLTFR 123


>tr|Q8VZ58|Q8VZ58_ARATH Putative uncharacterized protein At5g60750
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At5g60750 PE=2 SV=1
          Length = 347

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 32/73 (43%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = +2

Query: 416 SSCVIKRPWLTKLMLSLSGCEKP----WLVPWTSFTIFQVMFLWFCTFWLVGSWIIPFAA 583
           S C  K  W      +     K     W VPWT  TI QVM LW   FW +GSW+IPF A
Sbjct: 86  SPCTDKTDWKATFQKAADAVLKAIGTRWKVPWTVETIVQVMLLWVAAFWFIGSWMIPFMA 145

Query: 584 HYAGCSKDTLTHR 622
           H +G  K++LT R
Sbjct: 146 HISGFHKESLTFR 158


>tr|A5AX14|A5AX14_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023148 PE=4 SV=1
          Length = 223

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +2

Query: 521 VMFLWFCTFWLVGSWIIPFAAHYAGCSKDTLTHR 622
           VM LW  +FWLVGSWIIPF AH AG  K+T+THR
Sbjct: 2   VMLLWIASFWLVGSWIIPFLAHKAGFRKETMTHR 35


>tr|Q00TI5|Q00TI5_OSTTA Homology to unknown gene OS=Ostreococcus
           tauri GN=Ot17g01040 PE=4 SV=1
          Length = 305

 Score = 44.3 bits (103), Expect = 0.006
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +2

Query: 440 WLTKLMLSLSGCEKPWLVPWTSFTIFQVMFLWFCTFWLVGSWIIPFAAHYAGCSKDTLTH 619
           W  + +   S     W  PW   T   VM +WFC F++VG+ + PF A   G      T 
Sbjct: 89  WFERFLKLPSDGSAIWDAPWGVKTTVSVMVVWFCLFFIVGNAVFPFVAGALGFDSTNFTQ 148

Query: 620 R 622
           R
Sbjct: 149 R 149