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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945078
Clone id YMU02A01NGRL0008_C11
Library
Length 615
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_C11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ACGATGGTAATAATGTGTTTGGGTACTTCGAGAGTTAGCACTGCATTCTTTCTCAAAAGC
GATGCTGTTGTACAATGTACAGTAGCGCAGCAGATGGAGCCACAGAGGAAGTGGATGATG
TGAGCTGCTCTGTGAAAGAGGATTTATTGCTCTGCTTCCGTTCATGCCCTTCCCTACAAC
CTTGACATAGCAGCGAATGATATGGCCGAAGGAAGCTCTGGAAAAGAAAAGCTTAAACCT
ATGAGGGGCTGTCTGAAAACAACTCAAAGCCAAGTGAATCATCGAGAAAACCTTAAACCT
ATGAGGGGCTCTCTCAAAACAACTCAAAGCCAAGTGAAGCCTCGAGAAAAGCTTAAACCG
ATGAGGGGCTGCCTGAAAACAACTCAAAGCCAAGTCAAGTCCCTAGATAGATTGGCAAGG
AGCAACATGGACATGAATAATATGTCTTCCAATGAGGGGCCCAGGCTTGACACAGCAACG
AATGATTTAACTGAAGGAAGCTCTAGAAGAGAGAAGCTTAAACCTATCAGAAGCCACCTT
AAGAAAATTGAAAATCAAGTGAAGCCTCCCGATAAAGTGGCAGAAAGCAACGTGGACATG
GATAGCATGTCTCTC
■■Homology search results ■■ -
sp_hit_id Q28824
Definition sp|Q28824|MYLK_BOVIN Myosin light chain kinase, smooth muscle OS=Bos taurus
Align length 55
Score (bit) 32.7
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945078|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_C11, 5'
         (615 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q28824|MYLK_BOVIN Myosin light chain kinase, smooth muscle OS...    33   1.5  
sp|A2T7E6|ZBT32_PANTR Zinc finger and BTB domain-containing prot...    31   4.4  
sp|Q07187|EM1_ARATH Em-like protein GEA1 OS=Arabidopsis thaliana...    30   7.5  
sp|Q3V089|RBM44_MOUSE RNA-binding protein 44 OS=Mus musculus GN=...    30   7.6  
sp|Q3TPE9|ANKY2_MOUSE Ankyrin repeat and MYND domain-containing ...    30   9.8  
sp|Q865X2|IL2_LAMGL Interleukin-2 OS=Lama glama GN=IL2 PE=2 SV=1       30   9.9  
sp|Q2PE47|IL2_CAMBA Interleukin-2 OS=Camelus bactrianus GN=IL2 P...    30   9.9  

>sp|Q28824|MYLK_BOVIN Myosin light chain kinase, smooth muscle
           OS=Bos taurus GN=MYLK PE=2 SV=1
          Length = 1176

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = +3

Query: 261 NSKPSESSRKP*TYEGLSQNNSKPSEASRKA*TDEGLPENNSKPSQVPR*IGKEQ 425
           N+KP+E+S+          +N+KP+EA +        P  N+KP+++P+  GKE+
Sbjct: 286 NAKPAETSKP--------LDNAKPAEAPK--------PLGNAKPAEIPKPTGKEE 324


>sp|A2T7E6|ZBT32_PANTR Zinc finger and BTB domain-containing protein
           32 OS=Pan troglodytes GN=ZBTB32 PE=3 SV=1
          Length = 487

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 306 GLSQNNSKPSEASRKA*TDEGLPENNSKPSQVPR*IGKEQ 425
           GL ++  +P + SR A  + G P    KP QV R  G+EQ
Sbjct: 123 GLKKHQEEPEKPSRNAERELGDPGEKQKPEQVSRTGGREQ 162


>sp|Q07187|EM1_ARATH Em-like protein GEA1 OS=Arabidopsis thaliana
           GN=EM1 PE=1 SV=1
          Length = 152

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +3

Query: 240 YEGLSENNSKPSESSRKP*TYEGLSQNNSKPSEASRKA*TDEGLPENNSKPSQVPR*IGK 419
           +EG  E   K  E+ ++   +EG  +   K  EA ++    EG  E   K  +      K
Sbjct: 54  HEGYQEIGHKGGEARKEQLGHEGYQEMGHKGGEARKEQLGHEGYQEMGHKGGEA----RK 109

Query: 420 EQHGHE*Y 443
           EQ GHE Y
Sbjct: 110 EQLGHEGY 117


>sp|Q3V089|RBM44_MOUSE RNA-binding protein 44 OS=Mus musculus
           GN=Rbm44 PE=2 SV=1
          Length = 1013

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
 Frame = +1

Query: 199 DMAEGSSGKEKLKPMR-GCLKTTQSQVNHRENLKPMRGSLKTTQSQVKPR-------EKL 354
           D    + G +  +P+  GCLK + + +N  EN   +R    TT  Q           EK 
Sbjct: 495 DAQRAAPGSDSGRPLSTGCLKPSGNSLN--ENSLELRKVFDTTDRQKHCNRAFQLCEEKA 552

Query: 355 KPMRGCLKTTQSQVKS 402
            P R C KTT+  +K+
Sbjct: 553 VPSRCCQKTTERAIKA 568


>sp|Q3TPE9|ANKY2_MOUSE Ankyrin repeat and MYND domain-containing
           protein 2 OS=Mus musculus GN=Ankmy2 PE=2 SV=1
          Length = 440

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
 Frame = +3

Query: 126 CSVKEDLLLCFRSCPSLQP*HSSE*YGRRKLWKRKA*TYEGLS----------ENNSKPS 275
           CSV + ++ C ++C        +  +  +K+ K     YE             E N  P+
Sbjct: 332 CSVCKMVIYCDQTC------QKTHWFAHKKMCKSLKDVYEKQQIEAAKHKRQEEKNGNPN 385

Query: 276 ESSR-----KP*TYEGLSQNNSKPS---EASRKA*TDEGLPENNSKPS 395
            SS      +P   EG++Q NS PS   E  ++A  D GL      P+
Sbjct: 386 VSSNHVNEDQPEAEEGITQENSIPSDSVEGEKEAANDTGLASAQDAPT 433


>sp|Q865X2|IL2_LAMGL Interleukin-2 OS=Lama glama GN=IL2 PE=2 SV=1
          Length = 154

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 226 EKLKPMRGCLKTTQSQVNHRENLKPMRGSLKTTQSQVKPRE 348
           E+LKP+   L   QS+ +H  N+K    ++  T S++K  E
Sbjct: 81  EELKPLEEVLNLAQSKNSHLTNIKDSMNNINLTVSELKGSE 121


>sp|Q2PE47|IL2_CAMBA Interleukin-2 OS=Camelus bactrianus GN=IL2 PE=2
           SV=1
          Length = 154

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 226 EKLKPMRGCLKTTQSQVNHRENLKPMRGSLKTTQSQVKPRE 348
           E+LKP+   L   QS+ +H  N+K    ++  T S++K  E
Sbjct: 81  EELKPLEEVLNLAQSKNSHLTNIKDSMNNINLTVSELKGSE 121
tr_hit_id A8WM46
Definition tr|A8WM46|A8WM46_CAEBR CBR-FBN-1 protein OS=Caenorhabditis briggsae
Align length 51
Score (bit) 37.4
E-value 0.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945078|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_C11, 5'
         (615 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8WM46|A8WM46_CAEBR CBR-FBN-1 protein OS=Caenorhabditis brigg...    37   0.70 
tr|B4K8D2|B4K8D2_DROMO GI10573 OS=Drosophila mojavensis GN=GI105...    35   3.5  
tr|B6K968|B6K968_TOXGO Dynactin p25, putative OS=Toxoplasma gond...    35   4.5  
tr|A3VN62|A3VN62_9PROT Probable ATP-binding protein OS=Parvularc...    34   6.0  
tr|A2E8Z5|A2E8Z5_TRIVA Viral A-type inclusion protein, putative ...    34   7.8  

>tr|A8WM46|A8WM46_CAEBR CBR-FBN-1 protein OS=Caenorhabditis briggsae
            GN=Cbr-fbn-1 PE=4 SV=2
          Length = 3928

 Score = 37.4 bits (85), Expect = 0.70
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = +3

Query: 255  ENNSKPSESSRKP*TYEGLSQNNSKPSEASRKA*TDEGLPENNSKPSQVPR 407
            E+ SKPSE+++ P       + ++KPSEA++        P +++KPS+ P+
Sbjct: 1385 ESFSKPSEATKAPEATSSAPEASAKPSEATKAPEATSTTPGSSTKPSEAPK 1435



 Score = 35.0 bits (79), Expect = 3.5
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 264  SKPSESSRKP*TYEGLSQNNSKPSEASRKA*TDEGLPENNSKPSQVPR 407
            +KPSE+++ P       ++ SKPSEA++        PE ++KPS+  +
Sbjct: 1368 AKPSEATKAPKATSAAPESFSKPSEATKAPEATSSAPEASAKPSEATK 1415


>tr|B4K8D2|B4K8D2_DROMO GI10573 OS=Drosophila mojavensis GN=GI10573
           PE=4 SV=1
          Length = 434

 Score = 35.0 bits (79), Expect = 3.5
 Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 14/157 (8%)
 Frame = +1

Query: 136 KRIYCSASVHALPYNLDIAANDMAEGSSGKEKLKPMRGCLKTTQSQVNHRENLKPMRGSL 315
           KR+  S+S   L   LDI  N + +     E LK  + CL T Q        +K M   L
Sbjct: 64  KRVVWSSSSEKLQERLDITNNALTKAMDQIEALKKEKHCLNTLQE--CSERTIKNMEAEL 121

Query: 316 KTTQSQVKPREK----------LKPMRGCLKTTQSQVKSLDRLARXXXXXXXXXXXEGPR 465
            + ++Q+   +           +K + G L   Q ++++  +L +           +   
Sbjct: 122 DSCRAQLSNEDNEQMVQSYNKAIKVLEGRLAAQQEELRTQAKLIKVLHEHKQRCGEQIDH 181

Query: 466 LDTATNDLTEGSSRRE----KLKPIRSHLKKIENQVK 564
           L +   D   G   RE    K+  ++  +++ E  ++
Sbjct: 182 LQSQLKDRHRGEVTREDNQAKVTSLQKQIREFEKSLQ 218


>tr|B6K968|B6K968_TOXGO Dynactin p25, putative OS=Toxoplasma gondii
           ME49 GN=TGME49_113820 PE=4 SV=1
          Length = 655

 Score = 34.7 bits (78), Expect = 4.5
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +3

Query: 222 KRKA*TYEGLSENNSKPSESSRKP*TYEGLSQNNSKPSEASRKA*TDEGLPENNSKPSQ 398
           K++    EG      KPSES ++    EG      KPSE+ ++    EG      KPS+
Sbjct: 61  KKEEKAAEGEETQKEKPSESEKEEKAAEGEETQKEKPSESEKEEKAAEGEETQKEKPSE 119



 Score = 34.3 bits (77), Expect = 5.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 243 EGLSENNSKPSESSRKP*TYEGLSQNNSKPSEASRKA*TDEGLPENNSKPSQ 398
           EG      KPSES ++    EG      KPSE+ ++    EG      KPS+
Sbjct: 88  EGEETQKEKPSESEKEEKAAEGEETQKEKPSESEKEEKAAEGEETQKEKPSE 139



 Score = 34.3 bits (77), Expect = 5.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 243 EGLSENNSKPSESSRKP*TYEGLSQNNSKPSEASRKA*TDEGLPENNSKPSQ 398
           EG      KPSES ++    EG      KPSE+ ++    EG      KPS+
Sbjct: 108 EGEETQKEKPSESEKEEKAAEGEETQKEKPSESEKEEKAAEGEETQKEKPSE 159



 Score = 34.3 bits (77), Expect = 5.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 243 EGLSENNSKPSESSRKP*TYEGLSQNNSKPSEASRKA*TDEGLPENNSKPSQ 398
           EG      KPSES ++    EG      KPSE+ ++    EG      KPS+
Sbjct: 128 EGEETQKEKPSESEKEEKAAEGEETQKEKPSESEKEEKAAEGEETQKEKPSE 179



 Score = 34.3 bits (77), Expect = 5.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 243 EGLSENNSKPSESSRKP*TYEGLSQNNSKPSEASRKA*TDEGLPENNSKPSQ 398
           EG      KPSES ++    EG      KPSE+ ++    EG      KPS+
Sbjct: 148 EGEETQKEKPSESEKEEKAAEGEETQKEKPSESEKEEKAAEGEETQKEKPSE 199



 Score = 34.3 bits (77), Expect = 5.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 243 EGLSENNSKPSESSRKP*TYEGLSQNNSKPSEASRKA*TDEGLPENNSKPSQ 398
           EG      KPSES ++    EG      KPSE+ ++    EG      KPS+
Sbjct: 168 EGEETQKEKPSESEKEEKAAEGEETQKEKPSESEKEEKAAEGEETQKEKPSE 219



 Score = 34.3 bits (77), Expect = 5.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 243 EGLSENNSKPSESSRKP*TYEGLSQNNSKPSEASRKA*TDEGLPENNSKPSQ 398
           EG      KPSES ++    EG      KPSE+ ++    EG      KPS+
Sbjct: 188 EGEETQKEKPSESEKEEKAAEGEETQKEKPSESEKEEKAAEGEETQKEKPSE 239



 Score = 34.3 bits (77), Expect = 5.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 243 EGLSENNSKPSESSRKP*TYEGLSQNNSKPSEASRKA*TDEGLPENNSKPSQ 398
           EG      KPSES ++    EG      KPSE+ ++    EG      KPS+
Sbjct: 208 EGEETQKEKPSESEKEEKAAEGEETQKEKPSESEKEEKAAEGEETQKEKPSE 259


>tr|A3VN62|A3VN62_9PROT Probable ATP-binding protein OS=Parvularcula
           bermudensis HTCC2503 GN=PB2503_00897 PE=3 SV=1
          Length = 632

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 457 GPRLDTATNDLTEGSSRREKLKPIRSHLKKIENQVKPPDKV 579
           GP   T  +   E ++RRE LKP+R+H+  +E ++   D V
Sbjct: 536 GPTAPTPADHRREAAARREALKPLRAHITGLEGEIARIDGV 576


>tr|A2E8Z5|A2E8Z5_TRIVA Viral A-type inclusion protein, putative
            OS=Trichomonas vaginalis G3 GN=TVAG_012450 PE=4 SV=1
          Length = 4057

 Score = 33.9 bits (76), Expect = 7.8
 Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 31/159 (19%)
 Frame = +1

Query: 208  EGSSGKEKLKPMRGCLKTTQSQVNHREN--------LKPMRGSLKTTQSQVKPR------ 345
            E  +  EK+K M G  K+ + Q+N  +N         K ++  L+  Q+++K +      
Sbjct: 1610 ESKTNNEKIKEMEGKQKSNELQINDLQNNVSQTENENKQLKSELEKLQTEIKSKSDQLNE 1669

Query: 346  ---------EKLKPMRGCLKTTQ----SQVKSLDRLARXXXXXXXXXXXEGPRLDTATND 486
                     E++   +G LK  Q    S +K +D L +               LD +   
Sbjct: 1670 IQNESKSQSEQIVTFQGELKELQNKLTSSLKQIDELQKENESFQKELQTRDQNLDDSHKQ 1729

Query: 487  LTEGSSR----REKLKPIRSHLKKIENQVKPPDKVAESN 591
            + E  ++     E++K    +L  ++N++   +  +++N
Sbjct: 1730 IEELQAKIDQYEEEIKSKDENLNNLQNKINNYENESKTN 1768