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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945084
Clone id YMU02A01NGRL0008_C18
Library
Length 253
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_C18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTACTATAACATAAGGTGCTGTGGTCATGGGAATCGATCCTATCTTTTTTCTATACCAAA
GGACTGCTTCTGTTGAGGTGATTGCTGTGCGTCCTGCCGTACTGGATTGCTTATCTGGTA
CCCTCCCCTCTGTCCTGTTGTGTGGTGCGCTGCCCTCGTACTGCACCACTGCCCTTGCCC
TGCGCTTGGATTGGTTTTGTATGGAAGTGAATCGAGTCCTGTGATCTGACAAAAAAAAAA
AAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q16787
Definition sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens
Align length 37
Score (bit) 33.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945084|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_C18, 5'
         (230 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens GN...    33   0.45 
sp|Q2T8Y6|CHEB2_BURTA Chemotaxis response regulator protein-glut...    33   0.59 
sp|Q20XE6|CHEB3_RHOPB Chemotaxis response regulator protein-glut...    31   2.2  
sp|Q85228|UL52_SUHVK DNA helicase/primase complex protein OS=Sui...    30   3.8  
sp|O55225|OTOGL_MOUSE Otogelin OS=Mus musculus GN=Otog PE=1 SV=1       30   5.0  
sp|Q6ZRI0|OTOGL_HUMAN Otogelin OS=Homo sapiens GN=OTOG PE=2 SV=3       30   5.0  
sp|P19418|PR13_PETCR Pathogenesis-related protein B OS=Petroseli...    29   6.5  
sp|P19417|PR11_PETCR Pathogenesis-related protein A OS=Petroseli...    29   6.5  
sp|Q04592|PCSK5_MOUSE Proprotein convertase subtilisin/kexin typ...    29   6.5  

>sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens
           GN=LAMA3 PE=2 SV=2
          Length = 3333

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 77  GDCCASCRTGLLIWYPPLCPVVWCAALVLHHCPCPAL 187
           G  C +CR+G   +  P+C   WC+AL  +  PC ++
Sbjct: 517 GPRCDTCRSGFYSF--PICQACWCSALGSYQMPCSSV 551


>sp|Q2T8Y6|CHEB2_BURTA Chemotaxis response regulator
           protein-glutamate methylesterase 2 OS=Burkholderia
           thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
           CIP 106301) GN=cheB2 PE=3 SV=2
          Length = 354

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 99  VLDCLSGTLPSVLLCGALPSYCTTALALRLDWFC 200
           VL  +SGT P +L+C  +P   T + A RLD  C
Sbjct: 186 VLQDMSGTPPPILICQHMPEGFTASFAARLDAIC 219


>sp|Q20XE6|CHEB3_RHOPB Chemotaxis response regulator
           protein-glutamate methylesterase 3 OS=Rhodopseudomonas
           palustris (strain BisB18) GN=cheB3 PE=3 SV=2
          Length = 364

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 99  VLDCLSGTLPSVLLCGALPSYCTTALALRLDWFC 200
           VL+CL    P++L+   +P   T A A RLD  C
Sbjct: 188 VLECLPAKAPAILIVQHMPQGFTAAFAKRLDSLC 221


>sp|Q85228|UL52_SUHVK DNA helicase/primase complex protein OS=Suid
           herpesvirus 1 (strain Kaplan) GN=UL52 PE=3 SV=1
          Length = 962

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 30  GIDPIFFLYQRTASVEVIAVRPAVLDCLSGTLPSVLLCGALPSYCTTALALRL 188
           G+D  F L    A  E++A RP V  CL+G + SV +     +  T A+   L
Sbjct: 44  GLDEAFSLPGERAEAELLARRPGVTFCLTGHVASVRVRPVFVAAATPAVVRAL 96


>sp|O55225|OTOGL_MOUSE Otogelin OS=Mus musculus GN=Otog PE=1 SV=1
          Length = 2910

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
 Frame = +2

Query: 8    NIRCCGHGNRSYLFSIPKDCFC*GDCCASCRTGLLIWYPP-------LCPVVWCAALVLH 166
            ++ C  H   +  +  P+D      CC SCR    ++  P       L    W A    H
Sbjct: 2718 SVLCDMHCEANQEYDHPRDLAA---CCGSCRNVSCLFTFPNGTTSLFLPGASWIADCARH 2774

Query: 167  HCPCPALGLVLYGSESS 217
            HC    LG VL  S  S
Sbjct: 2775 HCGSTPLGAVLVRSPIS 2791


>sp|Q6ZRI0|OTOGL_HUMAN Otogelin OS=Homo sapiens GN=OTOG PE=2 SV=3
          Length = 2925

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
 Frame = +2

Query: 8    NIRCCGHGNRSYLFSIPKDCFC*GDCCASCRTGLLIWYPP-------LCPVVWCAALVLH 166
            ++ C  H   +  +  P+D      CC SCR    ++  P       L    W A    H
Sbjct: 2733 SVLCDIHCEANQEYEHPRDLAA---CCGSCRNVSCLFTFPNGTTSLFLPGASWIADCARH 2789

Query: 167  HCPCPALGLVLYGSESS 217
            HC    LG VL  S  S
Sbjct: 2790 HCSSTPLGAVLVRSPIS 2806


>sp|P19418|PR13_PETCR Pathogenesis-related protein B OS=Petroselinum
           crispum GN=PCPR1-3 PE=2 SV=1
          Length = 155

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 167 GAVRGQRTTQQDRGEGTR*AIQYGRTHSNHLNRSSPLV*KKDRIDSHDHSTLCYS 3
           GA++   T + D G GT   +        HL  +SP    K ++D+ D +T  YS
Sbjct: 37  GAIKSSETLEGDGGVGTVKLV--------HLGDASPFKTMKQKVDAIDKATFTYS 83


>sp|P19417|PR11_PETCR Pathogenesis-related protein A OS=Petroselinum
           crispum GN=PCPR1-1 PE=2 SV=1
          Length = 155

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 167 GAVRGQRTTQQDRGEGTR*AIQYGRTHSNHLNRSSPLV*KKDRIDSHDHSTLCYS 3
           GA++   T + D G GT   +        HL  +SP    K ++D+ D +T  YS
Sbjct: 37  GAIKSSETLEGDGGVGTVKLV--------HLGDASPFKTMKQKVDAIDKATFTYS 83


>sp|Q04592|PCSK5_MOUSE Proprotein convertase subtilisin/kexin type 5
            OS=Mus musculus GN=Pcsk5 PE=1 SV=2
          Length = 1877

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +2

Query: 71   C*GDCCASCRTGLLIWYP---PLCP 136
            C G  CASC TG+ +W     P CP
Sbjct: 1219 CNGSLCASCPTGMYLWLQACVPSCP 1243
tr_hit_id A3NFU4
Definition tr|A3NFU4|A3NFU4_BURP6 Chemotaxis response regulator protein-glutamate methylesterase OS=Burkholderia pseudomallei (strain 668)
Align length 35
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945084|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_C18, 5'
         (230 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3NFU4|A3NFU4_BURP6 Chemotaxis response regulator protein-glu...    35   2.4  
tr|B2H660|B2H660_BURPS Chemotaxis response regulator protein-glu...    35   2.4  
tr|A8EJM1|A8EJM1_BURPS Chemotaxis response regulator protein-glu...    35   2.4  
tr|A4LLY0|A4LLY0_BURPS Chemotaxis response regulator protein-glu...    35   2.4  
tr|A3FIJ5|A3FIJ5_BURPS Chemotaxis response regulator OS=Burkhold...    35   2.4  
tr|Q6VU67|Q6VU67_HUMAN Laminin alpha 3 splice variant b2 OS=Homo...    33   7.1  
tr|O14637|O14637_HUMAN Laminin alpha 3b chain (Fragment) OS=Homo...    33   7.1  
tr|B0YJ32|B0YJ32_HUMAN Laminin alpha-3 chain variant 1 OS=Homo s...    33   7.1  
tr|B4V901|B4V901_9ACTO Putative uncharacterized protein OS=Strep...    33   9.3  

>tr|A3NFU4|A3NFU4_BURP6 Chemotaxis response regulator
           protein-glutamate methylesterase OS=Burkholderia
           pseudomallei (strain 668) GN=BURPS668_A0209 PE=4 SV=1
          Length = 354

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 96  AVLDCLSGTLPSVLLCGALPSYCTTALALRLDWFC 200
           AVL  +SGT P +L+C  +P   T + A RLD  C
Sbjct: 185 AVLQDMSGTPPPILICQHMPEGFTASFAARLDTIC 219


>tr|B2H660|B2H660_BURPS Chemotaxis response regulator
           protein-glutamate methylesterase OS=Burkholderia
           pseudomallei 1655 GN=BURPS1655_C0614 PE=4 SV=1
          Length = 354

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 96  AVLDCLSGTLPSVLLCGALPSYCTTALALRLDWFC 200
           AVL  +SGT P +L+C  +P   T + A RLD  C
Sbjct: 185 AVLQDMSGTPPPILICQHMPEGFTASFAARLDTIC 219


>tr|A8EJM1|A8EJM1_BURPS Chemotaxis response regulator
           protein-glutamate methylesterase OS=Burkholderia
           pseudomallei 406e GN=BURPS406E_P0364 PE=4 SV=1
          Length = 354

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 96  AVLDCLSGTLPSVLLCGALPSYCTTALALRLDWFC 200
           AVL  +SGT P +L+C  +P   T + A RLD  C
Sbjct: 185 AVLQDMSGTPPPILICQHMPEGFTASFAARLDTIC 219


>tr|A4LLY0|A4LLY0_BURPS Chemotaxis response regulator
           protein-glutamate methylesterase OS=Burkholderia
           pseudomallei 305 GN=BURPS305_3658 PE=4 SV=1
          Length = 354

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 96  AVLDCLSGTLPSVLLCGALPSYCTTALALRLDWFC 200
           AVL  +SGT P +L+C  +P   T + A RLD  C
Sbjct: 185 AVLQDMSGTPPPILICQHMPEGFTASFAARLDTIC 219


>tr|A3FIJ5|A3FIJ5_BURPS Chemotaxis response regulator
           OS=Burkholderia pseudomallei GN=btfc-orf18 PE=4 SV=1
          Length = 344

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 96  AVLDCLSGTLPSVLLCGALPSYCTTALALRLDWFC 200
           AVL  +SGT P +L+C  +P   T + A RLD  C
Sbjct: 175 AVLQDMSGTPPPILICQHMPEGFTASFAARLDTIC 209


>tr|Q6VU67|Q6VU67_HUMAN Laminin alpha 3 splice variant b2 OS=Homo
           sapiens GN=LAMA3 PE=2 SV=1
          Length = 3277

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 77  GDCCASCRTGLLIWYPPLCPVVWCAALVLHHCPCPAL 187
           G  C +CR+G   +  P+C   WC+AL  +  PC ++
Sbjct: 517 GPRCDTCRSGFYSF--PICQACWCSALGSYQMPCSSV 551


>tr|O14637|O14637_HUMAN Laminin alpha 3b chain (Fragment) OS=Homo
           sapiens PE=2 SV=1
          Length = 1486

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 77  GDCCASCRTGLLIWYPPLCPVVWCAALVLHHCPCPAL 187
           G  C +CR+G   +  P+C   WC+AL  +  PC ++
Sbjct: 480 GPRCDTCRSGFYSF--PICQACWCSALGSYQMPCSSV 514


>tr|B0YJ32|B0YJ32_HUMAN Laminin alpha-3 chain variant 1 OS=Homo
           sapiens GN=LAMA3 PE=4 SV=1
          Length = 3335

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 77  GDCCASCRTGLLIWYPPLCPVVWCAALVLHHCPCPAL 187
           G  C +CR+G   +  P+C   WC+AL  +  PC ++
Sbjct: 519 GPRCDTCRSGFYSF--PICQACWCSALGSYQMPCSSV 553


>tr|B4V901|B4V901_9ACTO Putative uncharacterized protein
           OS=Streptomyces sp. Mg1 GN=SSAG_04312 PE=4 SV=1
          Length = 226

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 101 TGLLIWYPPLCPVVW-CAALVLHHCPCPALGLVLYG 205
           TGLL+W+  L P+VW  +A  +H     A+G+VL G
Sbjct: 149 TGLLMWFTHLAPLVWRTSATFVHDWLALAIGVVLAG 184