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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945087
Clone id YMU02A01NGRL0008_C22
Library
Length 184
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_C22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCAATGCCTGGTGCAGTTGGAGCTCTTGCCTACTAGATCTTTGACGTGGCTGATCGCATC
TCCCAGAAACCCGACTGCATGATGATATTGNAACTGCAATGATCCCACATATAGAATTGT
ACAACTACGATGAATATCCCTACTTGCTATACAACCTTGAGATGGCCCTCATGGGCTTTG
CTGA
■■Homology search results ■■ -
sp_hit_id Q32904
Definition sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum
Align length 30
Score (bit) 33.1
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945087|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_C22, 5'
         (184 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplas...    33   0.44 
sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloropl...    33   0.44 

>sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic
           OS=Pisum sativum GN=lhca3 PE=1 SV=1
          Length = 275

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 17/30 (56%), Positives = 19/30 (63%)
 Frame = +3

Query: 93  TAMIPHIELYNYDEYPYLLYNLEMALMGFA 182
           T +IP    YNY    Y L+ LEMALMGFA
Sbjct: 139 TGVIPPAGTYNYWADNYTLFVLEMALMGFA 168


>sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8,
           chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1
          Length = 273

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 17/30 (56%), Positives = 19/30 (63%)
 Frame = +3

Query: 93  TAMIPHIELYNYDEYPYLLYNLEMALMGFA 182
           T +IP    YNY    Y L+ LEMALMGFA
Sbjct: 137 TGVIPPAGTYNYWADNYTLFVLEMALMGFA 166
tr_hit_id A0FHB6
Definition tr|A0FHB6|A0FHB6_LYCAU Type III chlorophyll a/b-binding protein OS=Lycoris aurea
Align length 40
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945087|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_C22, 5'
         (184 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0FHB6|A0FHB6_LYCAU Type III chlorophyll a/b-binding protein ...    35   1.5  
tr|A0FHB5|A0FHB5_LYCAU Type III chlorophyll a/b-binding protein ...    35   1.5  
tr|Q02071|Q02071_PINSY Type III chlorophyll a /b-binding protein...    35   1.9  
tr|Q6Y0E5|Q6Y0E5_VITVI Chlorophyll a/b binding protein (Fragment...    34   3.2  
tr|A7PSQ5|A7PSQ5_VITVI Chromosome chr6 scaffold_28, whole genome...    34   3.2  
tr|A9U226|A9U226_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   4.2  
tr|A9TEM8|A9TEM8_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.2  
tr|A9TEM7|A9TEM7_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   4.2  
tr|A9PK62|A9PK62_POPJC Putative uncharacterized protein OS=Popul...    34   4.2  
tr|A9PE75|A9PE75_POPTR Putative uncharacterized protein OS=Popul...    34   4.2  
tr|Q9M538|Q9M538_ALOME Chlorophyll a/b-binding protein type III ...    33   7.2  
tr|A9NZR0|A9NZR0_PICSI Putative uncharacterized protein OS=Picea...    33   7.2  
tr|A9TB65|A9TB65_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   9.4  

>tr|A0FHB6|A0FHB6_LYCAU Type III chlorophyll a/b-binding protein
           OS=Lycoris aurea PE=2 SV=1
          Length = 275

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 21/40 (52%), Positives = 24/40 (60%)
 Frame = +3

Query: 63  PETRLHDDIXTAMIPHIELYNYDEYPYLLYNLEMALMGFA 182
           PET L     T +IP    Y+Y   PY L+ LEMALMGFA
Sbjct: 130 PETAL-PWFQTGVIPPAGTYSYWADPYTLFVLEMALMGFA 168


>tr|A0FHB5|A0FHB5_LYCAU Type III chlorophyll a/b-binding protein
           OS=Lycoris aurea PE=2 SV=1
          Length = 275

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 21/40 (52%), Positives = 24/40 (60%)
 Frame = +3

Query: 63  PETRLHDDIXTAMIPHIELYNYDEYPYLLYNLEMALMGFA 182
           PET L     T +IP    Y+Y   PY L+ LEMALMGFA
Sbjct: 130 PETAL-PWFQTGVIPPAGTYSYWADPYTLFVLEMALMGFA 168


>tr|Q02071|Q02071_PINSY Type III chlorophyll a /b-binding protein
           OS=Pinus sylvestris GN=lhaC1 PE=2 SV=1
          Length = 286

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = +3

Query: 93  TAMIPHIELYNYDEYPYLLYNLEMALMGFA 182
           T +IP    YNY   P+ L+ LEMALMGFA
Sbjct: 150 TGVIPPAGTYNYWADPFTLFVLEMALMGFA 179


>tr|Q6Y0E5|Q6Y0E5_VITVI Chlorophyll a/b binding protein (Fragment)
           OS=Vitis vinifera GN=Lhca3 PE=2 SV=1
          Length = 166

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = +3

Query: 63  PETRLHDDIXTAMIPHIELYNYDEYPYLLYNLEMALMGFA 182
           PET L     T + P    YNY   PY L+  EMALMGFA
Sbjct: 20  PETAL-PWFKTGVFPPAGTYNYWADPYTLFVFEMALMGFA 58


>tr|A7PSQ5|A7PSQ5_VITVI Chromosome chr6 scaffold_28, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023035001
           PE=4 SV=1
          Length = 274

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = +3

Query: 63  PETRLHDDIXTAMIPHIELYNYDEYPYLLYNLEMALMGFA 182
           PET L     T + P    YNY   PY L+  EMALMGFA
Sbjct: 128 PETAL-PWFKTGVFPPAGTYNYWADPYTLFVFEMALMGFA 166


>tr|A9U226|A9U226_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_154531 PE=4 SV=1
          Length = 224

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 93  TAMIPHIELYNYDEYPYLLYNLEMALMGFA 182
           + +IP +  Y+Y   PY L+ LEMALMGFA
Sbjct: 88  SGVIPPVGNYSYWADPYTLFVLEMALMGFA 117


>tr|A9TEM8|A9TEM8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_60069 PE=4 SV=1
          Length = 242

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 93  TAMIPHIELYNYDEYPYLLYNLEMALMGFA 182
           + +IP +  Y+Y   PY L+ LEMALMGFA
Sbjct: 106 SGVIPPVGNYSYWADPYTLFVLEMALMGFA 135


>tr|A9TEM7|A9TEM7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_144392 PE=4 SV=1
          Length = 224

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 93  TAMIPHIELYNYDEYPYLLYNLEMALMGFA 182
           + +IP +  Y+Y   PY L+ LEMALMGFA
Sbjct: 88  SGVIPPVGNYSYWADPYTLFVLEMALMGFA 117


>tr|A9PK62|A9PK62_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 274

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/40 (50%), Positives = 23/40 (57%)
 Frame = +3

Query: 63  PETRLHDDIXTAMIPHIELYNYDEYPYLLYNLEMALMGFA 182
           PET L     T +IP    Y+Y   PY L+  EMALMGFA
Sbjct: 129 PETAL-PWFRTGVIPPAGTYSYWADPYTLFVFEMALMGFA 167


>tr|A9PE75|A9PE75_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 274

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/40 (50%), Positives = 23/40 (57%)
 Frame = +3

Query: 63  PETRLHDDIXTAMIPHIELYNYDEYPYLLYNLEMALMGFA 182
           PET L     T +IP    Y+Y   PY L+  EMALMGFA
Sbjct: 129 PETAL-PWFRTGVIPPAGTYSYWADPYTLFVFEMALMGFA 167