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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945088
Clone id YMU02A01NGRL0008_C23
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_C23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACCACAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGATAAGATGTCGTGCTG
CAATGGTAACTGTGGGCGCGGCGCAAACTGTCAATGCGCCAGCGGCTGCAAGGGGTGCGG
CCGAACTGACAGCCTTGTGCTGTCGAAGGAGGCGCCTCTCGTTCTCAGTGCCACTGCCTC
CGTCTGCCCCAGCTATGAAAGGGCTCTAGGTTTCGGAGTGGAGAACATCTCTGGGTATCT
TGGCTCTCCTACTTCTTGTTTCCCTCTCAACTGAGCTTAAGGTAGCCTAGTACAAGGGGT
TGCCTTAATAACACCAAAAATAATGTATTTGTATTTAGTTACTAGTCAGTCGTGCAATTA
ACATCCATGGATCGCTTGTACATAGTATGCTCACCTTTGTAATCTCGGAATTTGGTAATG
ATAATGATAATGGCTTAAGCCAAGCCATAAAATGCAACACCTTTAGCTTCGAAAAATGGT
AAGAGACATGGTTCANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 61
Score (bit) 33.9
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945088|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_C23, 5'
         (496 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg...    34   0.43 
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu...    33   0.95 
sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain AT...    30   6.1  
sp|P63392|Y1383_MYCBO Uncharacterized ABC transporter ATP-bindin...    30   8.0  
sp|P63391|Y1348_MYCTU Uncharacterized ABC transporter ATP-bindin...    30   8.0  
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien...    30   8.0  
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil...    30   8.0  

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
           norvegicus GN=Gata4 PE=1 SV=1
          Length = 440

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 276 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 97
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAR 200

Query: 96  H 94
           H
Sbjct: 201 H 201


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=1 SV=3
          Length = 440

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 276 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 97
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 96  H 94
           H
Sbjct: 201 H 201


>sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain ATCC
            1020 / DSM 3700 / NRRL 181) GN=myoA PE=3 SV=1
          Length = 1250

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 249  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHP-LQPLAH*QFAPRP 73
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P  QPL   +  P+P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 72   QLP 64
              P
Sbjct: 1033 AAP 1035


>sp|P63392|Y1383_MYCBO Uncharacterized ABC transporter ATP-binding
           protein Mb1383 OS=Mycobacterium bovis GN=Mb1383 PE=3
           SV=1
          Length = 859

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
 Frame = -2

Query: 186 QTEAVALRTRGASFDSTRLSVRPHPLQPL----------AH*QFAPRPQLPLQHDI 49
           +T  +A R    + D T L+VR HP +PL           H  F  RP +P+  D+
Sbjct: 574 RTGLLAARHLQVTLDETELAVREHPREPLDGEAPATVVFDHVTFGYRPGVPVIQDV 629


>sp|P63391|Y1348_MYCTU Uncharacterized ABC transporter ATP-binding
           protein Rv1348/MT1390 OS=Mycobacterium tuberculosis
           GN=Rv1348 PE=3 SV=1
          Length = 859

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
 Frame = -2

Query: 186 QTEAVALRTRGASFDSTRLSVRPHPLQPL----------AH*QFAPRPQLPLQHDI 49
           +T  +A R    + D T L+VR HP +PL           H  F  RP +P+  D+
Sbjct: 574 RTGLLAARHLQVTLDETELAVREHPREPLDGEAPATVVFDHVTFGYRPGVPVIQDV 629


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
           GN=GATA4 PE=1 SV=2
          Length = 442

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -2

Query: 276 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 97
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
           familiaris GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -2

Query: 276 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 97
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200
tr_hit_id B8A9Y1
Definition tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 23
Score (bit) 36.2
E-value 0.88
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945088|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_C23, 5'
         (496 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.88 
tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   5.7  
tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus muscul...    33   9.8  
tr|Q01Y03|Q01Y03_SOLUE Putative uncharacterized protein OS=Solib...    33   9.8  

>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05418 PE=4 SV=1
          Length = 502

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = -2

Query: 117 HPLQPLAH*QFAPRPQLPLQHDI 49
           HP QPL H Q  P PQLP QHD+
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHDM 242


>tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_194715 PE=4 SV=1
          Length = 547

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
 Frame = +1

Query: 79  RRKLSMRQRLQGVRPN--------*QPCAVEGGASRSQCHCLRLPQL*KGSRFRSGEHLW 234
           RR L ++ RLQG +PN         QP  +   AS    H L  P      R RSG+  W
Sbjct: 47  RRALELQCRLQGPQPNATGPVLQPRQPLPLPPAASPQLLHDLGTPPTQSSGRLRSGQLTW 106

Query: 235 VSW 243
             W
Sbjct: 107 RYW 109


>tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=2 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 276 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 97
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 96  H 94
           H
Sbjct: 201 H 201


>tr|Q01Y03|Q01Y03_SOLUE Putative uncharacterized protein
           OS=Solibacter usitatus (strain Ellin6076) GN=Acid_4501
           PE=4 SV=1
          Length = 149

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 101 SGCKGCGRTDSLVLSKEAPLVLSATASVCPSYERALGFGVENISGYLGSPTSCFPLN 271
           +GC  CGR     + +  P     TAS+   Y R+ GF   ++ G+L S  +    N
Sbjct: 3   AGCCPCGRAQRNNVERRVPSDCQRTASMAREYLRSHGFTEADVDGHLRSTQAILDAN 59