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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945095
Clone id YMU02A01NGRL0008_D09
Library
Length 459
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_D09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GAATTGCCGATGTCTCCACATACTGCTTGTTAATGTCAGAATATTTCCCTCTTGTGGATA
ATCTTTGTGCTTTGTTGGTTTACAAAAGAACAATCTATAAATTTGCCAGTATTGTGACGG
CCTCTGCGGCCCTAGACAAGCTTTCTAGATTCTTCATTCGCACAGCGGACCCAATGGCTA
TGTAATGGAGATAATACCAGTTTTTCAGTGACATTGCCGTCCTGCAATTTGGAGTAGTAT
TCCCTCCTTGAAAAAGACGCCTCGGTGAAACCTACCGTTCTGAACATTGTGAAATTGACT
TGTAATCTCATTACTGTGTCTCCTGCCATGTATTCTAGCGAACTCGATAACAAAATACCC
TGCACCTTGCCGCTCATCACATTACTTTTGTACTTCAATAGGGTACCTTTAGACATGGAT
ACCATCATGTTTCTTGTGATGAGCCAGAACTTTGTTCGA
■■Homology search results ■■ -
sp_hit_id P62580
Definition sp|P62580|CAT_SALTI Chloramphenicol acetyltransferase OS=Salmonella typhi
Align length 29
Score (bit) 29.6
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945095|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_D09, 5'
         (459 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62580|CAT_SALTI Chloramphenicol acetyltransferase OS=Salmone...    30   6.5  
sp|P58777|CAT_KLESP Chloramphenicol acetyltransferase OS=Klebsie...    30   6.5  
sp|P62577|CAT_ECOLX Chloramphenicol acetyltransferase OS=Escheri...    30   6.5  
sp|P62579|CAT_ACIBA Chloramphenicol acetyltransferase OS=Acineto...    30   6.5  
sp|P62578|CAT_ACIAN Chloramphenicol acetyltransferase OS=Acineto...    30   6.5  
sp|Q30TP7|RPOB_SULDN DNA-directed RNA polymerase subunit beta OS...    29   8.6  

>sp|P62580|CAT_SALTI Chloramphenicol acetyltransferase OS=Salmonella
           typhi GN=cat PE=3 SV=1
          Length = 219

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 450 VLAHHKKHDGIHV*RYPIEVQK*CDERQG 364
           +  HH   DG HV R   E+Q+ CDE QG
Sbjct: 189 IQVHHAVCDGFHVGRMLNELQQYCDEWQG 217


>sp|P58777|CAT_KLESP Chloramphenicol acetyltransferase OS=Klebsiella
           sp. GN=cat PE=1 SV=1
          Length = 219

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 450 VLAHHKKHDGIHV*RYPIEVQK*CDERQG 364
           +  HH   DG HV R   E+Q+ CDE QG
Sbjct: 189 IQVHHAVCDGFHVGRMLNELQQYCDEWQG 217


>sp|P62577|CAT_ECOLX Chloramphenicol acetyltransferase
           OS=Escherichia coli GN=cat PE=1 SV=1
          Length = 219

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 450 VLAHHKKHDGIHV*RYPIEVQK*CDERQG 364
           +  HH   DG HV R   E+Q+ CDE QG
Sbjct: 189 IQVHHAVCDGFHVGRMLNELQQYCDEWQG 217


>sp|P62579|CAT_ACIBA Chloramphenicol acetyltransferase
           OS=Acinetobacter baumannii GN=cat PE=3 SV=1
          Length = 219

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 450 VLAHHKKHDGIHV*RYPIEVQK*CDERQG 364
           +  HH   DG HV R   E+Q+ CDE QG
Sbjct: 189 IQVHHAVCDGFHVGRMLNELQQYCDEWQG 217


>sp|P62578|CAT_ACIAN Chloramphenicol acetyltransferase
           OS=Acinetobacter calcoaceticus subsp. anitratus GN=cat
           PE=3 SV=1
          Length = 219

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 450 VLAHHKKHDGIHV*RYPIEVQK*CDERQG 364
           +  HH   DG HV R   E+Q+ CDE QG
Sbjct: 189 IQVHHAVCDGFHVGRMLNELQQYCDEWQG 217


>sp|Q30TP7|RPOB_SULDN DNA-directed RNA polymerase subunit beta
           OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
           1251) GN=rpoB PE=3 SV=1
          Length = 1381

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = -2

Query: 272 GFTEASFSRREYYSKLQDGNVTEKLVLSPLHSHWVRCANEESRKLV*GRRGRHNTGKFID 93
           GF EA       Y  +++G VT+++V       ++    EE +K+          G+FID
Sbjct: 603 GFIEAP------YKVMKEGKVTDEIV-------YLTATQEEGKKIAAASNKLDKDGQFID 649

Query: 92  CSFVNQQSTKIIHK 51
              V +   +I+H+
Sbjct: 650 KMVVTRVDGEILHR 663
tr_hit_id O58688
Definition tr|O58688|O58688_PYRHO Putative uncharacterized protein PH0928 OS=Pyrococcus horikoshii
Align length 97
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945095|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_D09, 5'
         (459 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O58688|O58688_PYRHO Putative uncharacterized protein PH0928 O...    35   1.9  
tr|A9B4G4|A9B4G4_HERA2 DNA polymerase I OS=Herpetosiphon auranti...    33   7.1  

>tr|O58688|O58688_PYRHO Putative uncharacterized protein PH0928
           OS=Pyrococcus horikoshii GN=PH0928 PE=4 SV=1
          Length = 442

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
 Frame = -2

Query: 458 RTKFWLITRNMMVSMSKGTLLKYKSNVM--SGKVQGILLSSSLEYMAG--DTVMRLQVNF 291
           R+  + +  +  V+   GT++ + S +   SG+   +  +++++Y  G  D V+R+Q+  
Sbjct: 36  RSSVYAVDGSRSVTRLSGTIVYFLSAIAIGSGRSYKLFYANAMQYNHGVSDQVVRMQME- 94

Query: 290 TMFRTVGFTEASFSRREYYSKLQDGNVTEKLVLSPLH 180
           TM   +G+      R E    L DG +T  L+  P++
Sbjct: 95  TMENMIGYLAEKMLRGEKKLILMDGTLTGSLIRPPVY 131


>tr|A9B4G4|A9B4G4_HERA2 DNA polymerase I OS=Herpetosiphon
           aurantiacus (strain ATCC 23779 / DSM 785) GN=Haur_0069
           PE=3 SV=1
          Length = 953

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 281 RTVGFTEASFSRREYYSKLQDGNVT 207
           + VG+ E  F RR Y+ +LQDG VT
Sbjct: 826 KAVGYVETLFGRRRYFRELQDGGVT 850