DK945110
Clone id YMU02A01NGRL0008_E04
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_E04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGAAGCAGTGGTATCAACGCAG
AGTGGCCATTACGGCCGGGGTATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCG
TCTCGCAGTGATTTTGATAGTTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAA
ACTTTATCTTCGCAGAAAATATGTGTTCTCTTATTATTTCTCCAAAATTAGAGGTAGATT
AATCAATCTCGTCACTCATTCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTG
TTTTGGTACCCCAAGAAATACTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAA
AAAATCTATGGGTAGACGTCTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAA
ATCTGGGAAAGAAAGTTGGAATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTAC
TTGGTTGAACGGGATCCCTCGTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTT
TTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 60
Score (bit) 31.6
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945110|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_E04, 5'
(465 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 32 1.8
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 30 5.1

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
Length = 455

Score = 31.6 bits (70), Expect = 1.8
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Frame = +2

Query: 248 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIEHLL 403
L+ T+ +++KE+N+W+++ D + RI ++ K GIN SGF+ ++E +
Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLEQAM 110


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
burgdorferi GN=recB PE=3 SV=1
Length = 1169

Score = 30.0 bits (66), Expect = 5.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2

Query: 218 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 382
IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 36.6
E-value 0.65
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945110|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_E04, 5'
(465 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 37 0.65

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
Length = 319

Score = 36.6 bits (83), Expect = 0.65
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = -1

Query: 189 LK*MSDEID*STSNFGEIIREHIFSAKIKFFLSVNLAEIRSLNYQNHCET 40
LK +++E+D ST + +E++F A +F+L VNL + R++ Q C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283