BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945111|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_E08, 5'
         (141 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UST1|PAN3_SCHPO PAB-dependent poly(A)-specific ribonuclease...    32   1.3  
sp|Q2L1E5|FLHD_BORA1 Transcriptional activator flhD OS=Bordetell...    29   6.3  
sp|Q7VZA1|FLHD_BORPE Transcriptional activator flhD OS=Bordetell...    29   8.2  
sp|Q7WAB3|FLHD_BORPA Transcriptional activator flhD OS=Bordetell...    29   8.2  
sp|Q44730|FLHD_BORBR Transcriptional activator flhD OS=Bordetell...    29   8.2  

>sp|Q9UST1|PAN3_SCHPO PAB-dependent poly(A)-specific ribonuclease
           subunit pan3 OS=Schizosaccharomyces pombe GN=ppk26 PE=2
           SV=1
          Length = 589

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -2

Query: 119 SFTTIKDHVS*RKTLCQNF----CCRHMPQKCALSH 24
           S T +KDH   ++TLC+N      C+H    CA  H
Sbjct: 25  SVTDLKDHSKAKRTLCRNILLYGSCKHSENGCAFRH 60


>sp|Q2L1E5|FLHD_BORA1 Transcriptional activator flhD OS=Bordetella
           avium (strain 197N) GN=flhD PE=3 SV=1
          Length = 107

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 138 TTLFAFKFHDYKRSRQLTQNLMSKFLLQAHATKMCPK 28
           + L  F+F DY     LTQ+++   L QAHAT +  K
Sbjct: 64  SVLCRFRFDDYGLLSALTQDVLGGALQQAHATILLAK 100


>sp|Q7VZA1|FLHD_BORPE Transcriptional activator flhD OS=Bordetella
           pertussis GN=flhD PE=3 SV=1
          Length = 107

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 132 LFAFKFHDYKRSRQLTQNLMSKFLLQAHAT 43
           L  F+F DY     LTQ+++   L QAHAT
Sbjct: 66  LCRFRFDDYSLLSALTQDVLGGALQQAHAT 95


>sp|Q7WAB3|FLHD_BORPA Transcriptional activator flhD OS=Bordetella
           parapertussis GN=flhD PE=3 SV=1
          Length = 107

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 132 LFAFKFHDYKRSRQLTQNLMSKFLLQAHAT 43
           L  F+F DY     LTQ+++   L QAHAT
Sbjct: 66  LCRFRFDDYSLLSALTQDVLGGALQQAHAT 95


>sp|Q44730|FLHD_BORBR Transcriptional activator flhD OS=Bordetella
           bronchiseptica GN=flhD PE=3 SV=1
          Length = 107

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 132 LFAFKFHDYKRSRQLTQNLMSKFLLQAHAT 43
           L  F+F DY     LTQ+++   L QAHAT
Sbjct: 66  LCRFRFDDYSLLSALTQDVLGGALQQAHAT 95

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945111|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_E08, 5'
         (141 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******