BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945115|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_E13, 5'
         (337 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8EQZ4|RF1_ARCB4 Peptide chain release factor 1 OS=Arcobacter...    32   1.3  
sp|P26811|DPOL1_SULSO DNA polymerase 1 OS=Sulfolobus solfataricu...    30   4.9  
sp|Q91YL7|PG2IP_MOUSE PGAP2-interacting protein OS=Mus musculus ...    29   6.4  
sp|Q1GTN0|ISPDF_SPHAL Bifunctional enzyme ispD/ispF OS=Sphingopy...    29   6.4  

>sp|A8EQZ4|RF1_ARCB4 Peptide chain release factor 1 OS=Arcobacter
           butzleri (strain RM4018) GN=prfA PE=3 SV=1
          Length = 355

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = -2

Query: 333 VNINYI-SGVHISKNGQRIHTMRTKEWTRVIRWLLYLAVQHKFLESDGATFREKVGVG-- 163
           V I +I SG+ ++   Q+          +V++  LY     K +E++GAT +E+VG G  
Sbjct: 240 VRITHIPSGIVVTNQDQKSQHKNKDRALKVLKAKLYEIEMEKKMEAEGATRKEQVGTGDR 299

Query: 162 GGRV 151
            GR+
Sbjct: 300 SGRI 303


>sp|P26811|DPOL1_SULSO DNA polymerase 1 OS=Sulfolobus solfataricus
           GN=dpo1 PE=1 SV=2
          Length = 882

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 295 KWTKNSYNEDKRMDKSYKMVTIS 227
           KW K ++N D  +DK+YK V  S
Sbjct: 674 KWVKTTFNLDLEVDKTYKFVAFS 696


>sp|Q91YL7|PG2IP_MOUSE PGAP2-interacting protein OS=Mus musculus
           GN=Pgap2ip PE=1 SV=1
          Length = 699

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -2

Query: 186 FREKVGVGGGRVNHLDIAIDLELRSARFPAPDFDPNFRHCPGMQKDARG 40
           +R  + +G  R++H +++ D E++ A+F  PD   N+R    +  D RG
Sbjct: 617 YRGLIRLGYARISHAELS-DSEIQMAKFRIPDDPANYRDNQKVVIDHRG 664


>sp|Q1GTN0|ISPDF_SPHAL Bifunctional enzyme ispD/ispF OS=Sphingopyxis
           alaskensis GN=ispDF PE=3 SV=1
          Length = 392

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 225 AVQHKFLESDGATFREKVGVGGGRVNHLDIAIDLE 121
           A  H FL   G    E+V   GGR+ HLD+ I  E
Sbjct: 304 AASHHFLSFAG----ERVAANGGRIGHLDLTIIAE 334

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945115|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_E13, 5'
         (337 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SYE8|A9SYE8_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|A9S624|A9S624_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.045
tr|A9U1X7|A9U1X7_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.22 
tr|Q0BA07|Q0BA07_BURCM Putative CheA signal transduction histidi...    33   7.2  
tr|Q3I4W7|Q3I4W7_EUPCR Putative DNNC zinc finger protein OS=Eupl...    33   7.2  
tr|Q0YUS3|Q0YUS3_9CHLB ABC transporter, transmembrane region:ABC...    33   9.3  
tr|B6NY25|B6NY25_BRAFL Putative uncharacterized protein OS=Branc...    33   9.3  

>tr|A9SYE8|A9SYE8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_137413 PE=4 SV=1
          Length = 212

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
 Frame = +1

Query: 46  SIFLHARTMAKVRIKVGSWKSRASKFQIDCNV*MINPTAPYP-HLLSESCSV 198
           S+ LHAR  AKVR+KVG+  S A + ++DC+  +  PTA  P  +L+++C V
Sbjct: 159 SVALHARGSAKVRVKVGAITSFAVRVRVDCDFTVKPPTATSPGSVLNKTCVV 210


>tr|A9S624|A9S624_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_181590 PE=4 SV=1
          Length = 220

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
 Frame = +1

Query: 40  TSSIFLHARTMAKVRIKVGSWKSRASKFQIDCNV*M-INPTAPYPHLLSESCSVR 201
           ++S+ LH R  AKV +K+GS+ S   K ++DC+V M +NP      L S+SC ++
Sbjct: 167 SNSVPLHFRANAKVHVKIGSYTSPGFKVRVDCDVTMGVNPVL----LKSKSCKLK 217


>tr|A9U1X7|A9U1X7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173224 PE=4 SV=1
          Length = 278

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +1

Query: 22  ATLLDATSS-IFLHARTMAKVRIKVGSWKSRASKFQIDCNV*MINPTAP-YPHLLSESC 192
           A LLD +++ I L AR   KV IK+  WK+ A    +DCN  +  P+AP    LL++SC
Sbjct: 214 ALLLDISANDIPLDARIDTKVAIKMRDWKTPAVWIHVDCNFHVAPPSAPGGAKLLNKSC 272


>tr|Q0BA07|Q0BA07_BURCM Putative CheA signal transduction histidine
           kinases OS=Burkholderia ambifaria (strain ATCC BAA-244 /
           AMMD) GN=Bamb_3462 PE=3 SV=1
          Length = 796

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/73 (31%), Positives = 31/73 (42%)
 Frame = -2

Query: 309 VHISKNGQRIHTMRTKEWTRVIRWLLYLAVQHKFLESDGATFREKVGVGGGRVNHLDIAI 130
           VHI  NG R+ +        V   LL  A+ H    SD     E+   G      +DIA+
Sbjct: 607 VHIDSNGHRVRSEIGATLKNVFMHLLRNAIDHGIETSD-----ERRAAGKAPAGKIDIAV 661

Query: 129 DLELRSARFPAPD 91
           D+E  + RF   D
Sbjct: 662 DVEDGALRFVLGD 674


>tr|Q3I4W7|Q3I4W7_EUPCR Putative DNNC zinc finger protein
           OS=Euplotes crassus PE=4 SV=1
          Length = 353

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +1

Query: 172 HLLSESCSVRLKKLMLYSKI**PSY--NSCPFFCPHC 276
           H ++E+ S+ ++ L+ +     PSY  N+CP+FC HC
Sbjct: 120 HFVNENPSLEMRHLIKFRFKELPSYDANACPYFCTHC 156


>tr|Q0YUS3|Q0YUS3_9CHLB ABC transporter, transmembrane region:ABC
           transporter related OS=Chlorobium ferrooxidans DSM 13031
           GN=CferDRAFT_1967 PE=3 SV=1
          Length = 579

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = -2

Query: 303 ISKNGQRIHTMRTKEWTRVIRWLLYLAVQHKFLESDGATFREKVGVGGGRVNHLDIAIDL 124
           I+ NG+ IH +  +EW R I W+     QH +L +  AT +E + +G    +  +I+  L
Sbjct: 396 ITMNGRPIHEIPLEEWHREISWV----PQHPYLFN--ATLKENILLGRADASEKEISDTL 449

Query: 123 E 121
           E
Sbjct: 450 E 450


>tr|B6NY25|B6NY25_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_100476 PE=4 SV=1
          Length = 402

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = -2

Query: 237 LLYLAVQHKFLESDGA-----TFREKVGVGGGRVNHLDIAIDLELRSARFPAPDFDPNFR 73
           LL + ++ K LE  G      TFR+KVG G  R  H++++       + FP PD  P++ 
Sbjct: 25  LLDVGLKVKVLERTGEVGGLWTFRDKVGYGVMRCTHINVS-KHNYSFSDFPFPDDVPDYP 83

Query: 72  HCPGMQK 52
           H   M K
Sbjct: 84  HHSHMAK 90