DK945119 |
Clone id |
YMU02A01NGRL0008_E20 |
Library |
YMU02 |
Length |
524 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_E20. 5' end sequence. |
Accession |
DK945119 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL535Contig1 |
Sequence |
GACTAAACAAGGGGCACATCGTTACCAGGCGCGAGCTTCCTGCTCGTCCTTCCTCAAGAA AGGGTAAACTTGGAACCAGAACCTCCTTTGTGAGGAAGCTGATCCGAGAAGTTGTAGGGT TTGCACCTTACGAGAAGCGTATTACTGAGCTTTTGAAGGTGGGAAAGGACAAGAGAGCTC TTAAGGTGGCAAAGAGGAGGCTTGGAACTCACCTAAGGGCGAAGAAAAAGCGTGAGGAAA TGTCTGCTGCTCTCCGGAAGCAGAGATCTACTGGTGGTACCGAGAAAAAGAAGTGATTTT CATACGTGTGGAAAATATTCTCCATGGTGGACTGCAATTCCCTTATCAGAGATCACCGCC ACAGAGATACCTAGGTGTGATTCCCATTTTTGTACCTGTAGTCAGAAAACTGCAGTTGAT ATTCATCAATTTTGAATTCTTGGATATCACTATCTGACATGTCTTGGCATTATCCAATTT ACTGAAATTTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O80929 |
Definition |
sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana |
Align length |
99 |
Score (bit) |
149.0 |
E-value |
9.0e-36 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945119|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0008_E20, 5' (494 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis... 149 9e-36 sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis... 147 2e-35 sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis... 144 3e-34 sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha c... 115 1e-25 sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapula... 113 5e-25 sp|Q92365|RL36A_SCHPO 60S ribosomal protein L36-A OS=Schizosacch... 109 8e-24 sp|Q5RAZ9|RL36_PONAB 60S ribosomal protein L36 OS=Pongo abelii G... 107 3e-23 sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36 OS=Homo sapiens G... 107 3e-23 sp|Q3T171|RL36_BOVIN 60S ribosomal protein L36 OS=Bos taurus GN=... 106 5e-23 sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropic... 106 7e-23 sp|Q66KU4|RL36_XENLA 60S ribosomal protein L36 OS=Xenopus laevis... 106 7e-23 sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota ... 105 9e-23 sp|O94658|RL36B_SCHPO 60S ribosomal protein L36-B OS=Schizosacch... 105 9e-23 sp|Q8UW19|RL36_LAPHA 60S ribosomal protein L36 OS=Lapemis hardwi... 105 1e-22 sp|P39032|RL36_RAT 60S ribosomal protein L36 OS=Rattus norvegicu... 105 1e-22 sp|Q6Q415|RL36_DANRE 60S ribosomal protein L36 OS=Danio rerio GN... 103 4e-22 sp|Q98TF6|RL36_CHICK 60S ribosomal protein L36 OS=Gallus gallus ... 103 6e-22 sp|P47964|RL36_MOUSE 60S ribosomal protein L36 OS=Mus musculus G... 101 2e-21 sp|Q90YT2|RL36_ICTPU 60S ribosomal protein L36 OS=Ictalurus punc... 101 2e-21 sp|P49181|RL36_CAEEL 60S ribosomal protein L36 OS=Caenorhabditis... 99 1e-20 sp|Q9HFR7|RL36_TRIHM 60S ribosomal protein L36 OS=Trichoderma ha... 93 6e-19 sp|P49630|RL36_DROME 60S ribosomal protein L36 OS=Drosophila mel... 92 1e-18 sp|P47834|RL36_CANAL 60S ribosomal protein L36 OS=Candida albica... 86 7e-17 sp|P0C6E6|RL36X_HUMAN Putative 60S ribosomal protein L36-like 1 ... 83 6e-16 sp|O14455|RL36B_YEAST 60S ribosomal protein L36-B OS=Saccharomyc... 80 4e-15 sp|Q55AQ9|RL36_DICDI 60S ribosomal protein L36 OS=Dictyostelium ... 80 5e-15 sp|P05745|RL36A_YEAST 60S ribosomal protein L36-A OS=Saccharomyc... 80 7e-15 sp|Q90YR8|RS6_ICTPU 40S ribosomal protein S6 OS=Ictalurus puncta... 35 0.25 sp|Q3UXZ9|JAD1A_MOUSE Histone demethylase JARID1A OS=Mus musculu... 33 0.93 sp|A9C0B9|SYA_DELAS Alanyl-tRNA synthetase OS=Delftia acidovoran... 32 2.1
>sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1 Length = 113
Score = 149 bits (375), Expect = 9e-36 Identities = 77/99 (77%), Positives = 83/99 (83%), Gaps = 3/99 (3%) Frame = +3
Query: 3 LNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRITELLKVGKDKRAL 182 LNKGH+VTRREL RP+SRKGK RT F+RKLIREV G APYEKRITELLKVGKDKRAL Sbjct: 14 LNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRAL 73
Query: 183 KVAKRRLGTHLRAKKKREEMSAALRKQRSTGG---TEKK 290 KVAKR+LGTH RAK+KREEMS+ LRK RS GG EKK Sbjct: 74 KVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112
>sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1 Length = 112
Score = 147 bits (372), Expect = 2e-35 Identities = 77/99 (77%), Positives = 83/99 (83%), Gaps = 2/99 (2%) Frame = +3
Query: 3 LNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRITELLKVGKDKRAL 182 LNKGH+VTRREL RP SRKGK RT F+R LI+EV G APYEKRITELLKVGKDKRAL Sbjct: 14 LNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRAL 73
Query: 183 KVAKRRLGTHLRAKKKREEMSAALRKQRSTGG--TEKKK 293 KVAKR+LGTH RAK+KREEMS+ LRK RS GG TEKKK Sbjct: 74 KVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112
>sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1 Length = 108
Score = 144 bits (362), Expect = 3e-34 Identities = 73/99 (73%), Positives = 83/99 (83%), Gaps = 2/99 (2%) Frame = +3
Query: 3 LNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRITELLKVGKDKRAL 182 LNKGH+VT+RE P RP++RKGK RT F+R LI+EV G APYEKRITELLKVGKDKRAL Sbjct: 10 LNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRAL 69
Query: 183 KVAKRRLGTHLRAKKKREEMSAALRKQRS--TGGTEKKK 293 KVAKR+LGTH RAK+KREEMS+ LRK RS G +EKKK Sbjct: 70 KVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108
>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1 Length = 101
Score = 115 bits (288), Expect = 1e-25 Identities = 57/94 (60%), Positives = 70/94 (74%) Frame = +3
Query: 3 LNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRITELLKVGKDKRAL 182 LNKGH VT++ RPS RKG L R VR ++REV G+APYE+R+ ELLKVGKDKRAL Sbjct: 8 LNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRAL 67
Query: 183 KVAKRRLGTHLRAKKKREEMSAALRKQRSTGGTE 284 K+ KR+LGTH+R KKKREEM+ LRK ++ E Sbjct: 68 KMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101
>sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1 Length = 110
Score = 113 bits (282), Expect = 5e-25 Identities = 58/96 (60%), Positives = 67/96 (69%) Frame = +3
Query: 3 LNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRITELLKVGKDKRAL 182 L KGH VT+ E RPS RKG L T FVR LIREV GFAP+E+R ELLKV KDKRAL Sbjct: 11 LGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRAL 70
Query: 183 KVAKRRLGTHLRAKKKREEMSAALRKQRSTGGTEKK 290 K K+RLGTHLR K+KR+E+S L QR ++K Sbjct: 71 KFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106
>sp|Q92365|RL36A_SCHPO 60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2 Length = 99
Score = 109 bits (272), Expect = 8e-24 Identities = 51/88 (57%), Positives = 70/88 (79%) Frame = +3
Query: 3 LNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRITELLKVGKDKRAL 182 LNKG ++T+R+LP RPS RKG+L RTSFVR ++REV GFAPYE+R+ EL++ +DKRA Sbjct: 9 LNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRAR 68
Query: 183 KVAKRRLGTHLRAKKKREEMSAALRKQR 266 K+AK+RLGT RAK K EE+++ ++ R Sbjct: 69 KLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>sp|Q5RAZ9|RL36_PONAB 60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3 Length = 105
Score = 107 bits (267), Expect = 3e-23 Identities = 56/89 (62%), Positives = 67/89 (75%), Gaps = 3/89 (3%) Frame = +3
Query: 3 LNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRITELLKVGKDKRAL 182 LNKGH VT+ R S R+G+L T FVR +IREV GFAPYE+R ELLKV KDKRAL Sbjct: 11 LNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL 70
Query: 183 KVAKRRLGTHLRAKKKREEMS---AALRK 260 K K+R+GTH+RAK+KREE+S AA+RK Sbjct: 71 KFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3 Length = 105
Score = 107 bits (267), Expect = 3e-23 Identities = 56/89 (62%), Positives = 67/89 (75%), Gaps = 3/89 (3%) Frame = +3
Query: 3 LNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRITELLKVGKDKRAL 182 LNKGH VT+ R S R+G+L T FVR +IREV GFAPYE+R ELLKV KDKRAL Sbjct: 11 LNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL 70
Query: 183 KVAKRRLGTHLRAKKKREEMS---AALRK 260 K K+R+GTH+RAK+KREE+S AA+RK Sbjct: 71 KFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>sp|Q3T171|RL36_BOVIN 60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3 Length = 105
Score = 106 bits (265), Expect = 5e-23 Identities = 56/89 (62%), Positives = 67/89 (75%), Gaps = 3/89 (3%) Frame = +3
Query: 3 LNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRITELLKVGKDKRAL 182 LNKGH VT+ R S R+G+L T FVR +IREV GFAPYE+R ELLKV KDKRAL Sbjct: 11 LNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL 70
Query: 183 KVAKRRLGTHLRAKKKREEMS---AALRK 260 K K+R+GTH+RAK+KREE+S AA+RK Sbjct: 71 KFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1 Length = 105
Score = 106 bits (264), Expect = 7e-23 Identities = 55/89 (61%), Positives = 66/89 (74%), Gaps = 3/89 (3%) Frame = +3
Query: 3 LNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRITELLKVGKDKRAL 182 LNKGH VT+ R R+G+L T FVR +IREV GFAPYE+R ELLKV KDKRAL Sbjct: 11 LNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL 70
Query: 183 KVAKRRLGTHLRAKKKREEMS---AALRK 260 K K+R+GTH+RAK+KREE+S AA+RK Sbjct: 71 KFIKKRIGTHIRAKRKREELSNVLAAMRK 99
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B5M1W9 |
Definition |
tr|B5M1W9|B5M1W9_RHEAU Ribosomal protein L36 OS=Rheum australe |
Align length |
97 |
Score (bit) |
157.0 |
E-value |
3.0e-37 |
Report |
|