DK945127 [AcEST]

DK945127
Clone id	YMU02A01NGRL0008_F06
Library	YMU02
Length	518
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_F06. 5' end sequence.
Accession	DK945127
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL1Contig3
Sequence	TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC TAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA ATAAATAAATCCGGGTCTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC GTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAAA TAAAGAACAAAATAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	O51578
Definition	sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia burgdorferi
Align length	53
Score (bit)	29.6
E-value	6.8
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK945127\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0008_F06, 5' (466 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 30 6.8 >sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia burgdorferi GN=recB PE=3 SV=1 Length = 1169 Score = 29.6 bits (65), Expect = 6.8 Identities = 19/53 (35%), Positives = 29/53 (54%) Frame = +1 Query: 217 IVLVPQEILGLISTSGEINKEKNLWVDVDSLIVTKPQRINLGKKVGINKSG 375 IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKG 672
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A6D2J9
Definition	tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length	50
Score (bit)	35.0
E-value	1.8
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK945127\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0008_F06, 5' (466 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 35 1.8 >tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1 GN=VSAK1_01567 PE=4 SV=1 Length = 319 Score = 35.0 bits (79), Expect = 1.8 Identities = 16/50 (32%), Positives = 31/50 (62%) Frame = -3 Query: 188 LKMSDEIDSTSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39 LK +++E+D ST + ++++F A +F+L VNL + R++ Q C + Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283