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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945129
Clone id YMU02A01NGRL0008_F09
Library
Length 364
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_F09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATGAGAAGGCTGCTCCTGACTTGGTTTAGATCAGATGTCTGGTGTGCATGGAGTGGTCT
AGTTGTGATGAGCTTTCAAGTAGCATGTATTTTAAGGAAGATTGTGGAAGTGATGCCTTG
GCTGATCGTTACTAGTGGGACTGATAATTGCTCTGTCAGCGTGTCTTTGAATCACTCAGA
AGAGGGTCTCTGTCTATGAGTGTTCTTAGGAAGTAAATATTTATTCATGTATAAATGTGC
TGGACATCTTCGCTTGCTAATGCAATCTGAAGATCTGTATTACCTGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
■■Homology search results ■■ -
sp_hit_id Q12457
Definition sp|Q12457|YD026_YEAST Myb domain-containing protein YDR026C OS=Saccharomyces cerevisiae
Align length 54
Score (bit) 29.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945129|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_F09, 5'
         (286 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12457|YD026_YEAST Myb domain-containing protein YDR026C OS=S...    29   6.3  
sp|Q9V9A8|PHTF_DROME Putative homeodomain transcription factor O...    29   8.3  

>sp|Q12457|YD026_YEAST Myb domain-containing protein YDR026C
           OS=Saccharomyces cerevisiae GN=YDR026C PE=1 SV=1
          Length = 570

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -2

Query: 255 KRRCPAHLYMNKYLLPKNTHRQRPSSE*FKDTLTEQLSVPLVTISQGITSTIFL 94
           KR C  H   +     +  HR+R SS+  K  +   L   L T+  GIT+T FL
Sbjct: 107 KRSC--HKKSSNSRSERKKHRKRKSSKERKAKIKMVLDPQLTTLDDGITTTAFL 158


>sp|Q9V9A8|PHTF_DROME Putative homeodomain transcription factor
           OS=Drosophila melanogaster GN=phtf PE=1 SV=2
          Length = 880

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 119 WLIVTSGTDNCSVSVSLNHSEEGL 190
           WL VT+ +++CS +  L+HS+ GL
Sbjct: 488 WLGVTTNSEDCSYTSDLDHSDGGL 511
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945129|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_F09, 5'
         (286 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******