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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945131
Clone id YMU02A01NGRL0008_F11
Library
Length 477
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_F11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
TGATGCAAATGGCAAAGACAATTCACAAAAGCAGTATGGTTACATCTCTCTAAATACGCT
CGATATTTCTAGCAGCAACACAGAAAATGGCCCCTGCATCACATTAAAAAAAAAAGGTGG
CCATAGAGATACAATCATGTACAAAATTGTTTCGCAAAGGCCGAGCACATGCGAAGGATA
TGAAACCCAGGGAGACACAGATGGACACTGGCAAGTAATGTGCATCCGTTCCAAGGTCTC
AACAAGATGTGAAGCTATTGGCAATATAAAAATGATAACCGATCTAGGGAAGTATAAATT
GTGGCACTCGTATATGTGCCCATAGAAAATGGCAGGTAATTTGTATAATAATCAAAAGGC
TCTCCACATCTTTGTTTCTCAAATAAGAACATACTTGTATTTTTAAAGGTGATCCATACA
TATTGGAAAATAAAGCTCTTTTTTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8T0S6
Definition sp|Q8T0S6|HIPPO_DROME Serine/threonine-protein kinase hippo OS=Drosophila melanogaster
Align length 55
Score (bit) 31.6
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945131|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_F11, 5'
         (447 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8T0S6|HIPPO_DROME Serine/threonine-protein kinase hippo OS=D...    32   1.6  
sp|Q7Z5Y7|KCD20_HUMAN BTB/POZ domain-containing protein KCTD20 O...    31   2.7  
sp|P31695|NOTC4_MOUSE Neurogenic locus notch homolog protein 4 O...    30   3.5  
sp|Q8CDD8|KCD20_MOUSE BTB/POZ domain-containing protein KCTD20 O...    30   3.5  
sp|Q6BQV7|GRC3_DEBHA Protein GRC3 OS=Debaryomyces hansenii GN=GR...    30   3.5  
sp|Q74KZ9|RECR_LACJO Recombination protein recR OS=Lactobacillus...    29   7.8  
sp|Q23175|HM32_CAEEL Homeobox protein ceh-32 OS=Caenorhabditis e...    29   7.8  

>sp|Q8T0S6|HIPPO_DROME Serine/threonine-protein kinase hippo
           OS=Drosophila melanogaster GN=hpo PE=1 SV=1
          Length = 669

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -1

Query: 363 RAF*LLYKLPAIFYGHIYECHNLYFPRSVIIFILPIASHLVETLERMHITCQCPS 199
           + F ++YKL    YG +Y+  +      V I ++P+ S L E ++ + I  QC S
Sbjct: 40  KVFDIMYKLGEGSYGSVYKAVHKESSSIVAIKLVPVESDLHEIIKEISIMQQCDS 94


>sp|Q7Z5Y7|KCD20_HUMAN BTB/POZ domain-containing protein KCTD20
           OS=Homo sapiens GN=KCTD20 PE=1 SV=1
          Length = 419

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 104 LKKKGGHRDTIMYKIVSQRPSTCEGYETQGDTDGHWQVMCIRSKVSTRCEAIGN 265
           +K++ G R  ++Y  V QRP     +E +     H    C+RSK  T   A G+
Sbjct: 331 IKRRPGGRSEVIYNYV-QRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGD 383


>sp|P31695|NOTC4_MOUSE Neurogenic locus notch homolog protein 4
           OS=Mus musculus GN=Notch4 PE=1 SV=2
          Length = 1964

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 122 HRDTIMYKIVSQRPSTCEGYETQGDTDGHWQVMCIRSKVSTRCEAIGN 265
           H+D    ++  Q PS CE   +  +T G +  +C+     +RCEA  N
Sbjct: 427 HQDLDECQMAQQGPSPCEHGGSCINTPGSFNCLCLPGYTGSRCEADHN 474


>sp|Q8CDD8|KCD20_MOUSE BTB/POZ domain-containing protein KCTD20
           OS=Mus musculus GN=Kctd20 PE=2 SV=1
          Length = 419

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 104 LKKKGGHRDTIMYKIVSQRPSTCEGYETQGDTDGHWQVMCIRSKVSTRCEAIG 262
           +K++ G R  ++Y  V QRP     +E +     H    C+RSK  T   A G
Sbjct: 331 IKRRPGGRSEVIYNYV-QRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAG 382


>sp|Q6BQV7|GRC3_DEBHA Protein GRC3 OS=Debaryomyces hansenii GN=GRC3
           PE=3 SV=2
          Length = 680

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 401 NTSMFLFEKQRCGEPFDYYTNYLPFSMGTYTSATIYTSLDRLSFLYCQ*LHILLR 237
           N S   F+  RC +     + Y PF +  Y   + +  +D L F +    HILLR
Sbjct: 418 NLSGLTFQNSRCFQGIYQTSKYSPFQLRMYNKLSYFHQVDTLKFDFNS--HILLR 470


>sp|Q74KZ9|RECR_LACJO Recombination protein recR OS=Lactobacillus
           johnsonii GN=recR PE=3 SV=1
          Length = 199

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 47  SLNTLDISSSNTENGPCITLKKKGGHRDTIMYKIVSQRPSTCEGYETQGDTDGHWQVM 220
           +L++  I  + TE+ PC   +     R TIM   V ++P     +E  G+ +G + V+
Sbjct: 53  NLHSCSICGNITESDPCEICRDSNRDRSTIM---VVEQPKDVMAFEEMGEYNGLYHVL 107


>sp|Q23175|HM32_CAEEL Homeobox protein ceh-32 OS=Caenorhabditis
           elegans GN=ceh-32 PE=1 SV=2
          Length = 439

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 167 TCEGYETQGDTDGHWQVMCIRSKVSTRCEAIGN 265
           TCE  ET GD DG ++ MC      T+ E  GN
Sbjct: 76  TCEQLETDGDVDGLFRFMCTIPPQKTQ-EVAGN 107
tr_hit_id Q4ZIR4
Definition tr|Q4ZIR4|Q4ZIR4_STRCM Methylmalonic semialdehyde dehydrogenase OS=Streptomyces cinnamonensis
Align length 65
Score (bit) 34.3
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945131|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_F11, 5'
         (447 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4ZIR4|Q4ZIR4_STRCM Methylmalonic semialdehyde dehydrogenase ...    34   3.1  
tr|Q9L1J1|Q9L1J1_STRCO Methylmalonic acid semialdehyde dehydroge...    33   5.3  
tr|Q0W3E1|Q0W3E1_UNCMA Putative uncharacterized protein OS=Uncul...    33   9.1  
tr|B3MHA7|B3MHA7_DROAN GF13179 OS=Drosophila ananassae GN=GF1317...    33   9.4  
tr|B8N6S5|B8N6S5_ASPFL Putative uncharacterized protein OS=Asper...    33   9.4  

>tr|Q4ZIR4|Q4ZIR4_STRCM Methylmalonic semialdehyde dehydrogenase
           OS=Streptomyces cinnamonensis GN=msdA PE=4 SV=1
          Length = 500

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = +2

Query: 80  TENGPCITLKKKGGHRDTIMYKIVSQRPSTCE------GYETQGDTDGHWQVMCIRSKVS 241
           +E GP IT      HRD +   +       CE      GY  +G  DGHW  + +  +V 
Sbjct: 319 SEMGPLIT----AAHRDKVASYVTGAAAEGCEVVLDGTGYTVEGYEDGHWIGLSLLDRVP 374

Query: 242 TRCEA 256
           T  +A
Sbjct: 375 TTAKA 379


>tr|Q9L1J1|Q9L1J1_STRCO Methylmalonic acid semialdehyde
           dehydrogenase OS=Streptomyces coelicolor GN=msdA PE=4
           SV=1
          Length = 500

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = +2

Query: 77  NTENGPCITLKKKGGHRDTIMYKIVSQRPSTCE------GYETQGDTDGHWQVMCIRSKV 238
           ++E GP IT      HRD +   +       CE      GY   G  DGHW  + +  +V
Sbjct: 318 SSEMGPLITK----AHRDKVASYVAGAAAEGCEVVLDGTGYTVDGHEDGHWIGISLLDRV 373

Query: 239 STRCEA 256
            T  +A
Sbjct: 374 PTTAKA 379


>tr|Q0W3E1|Q0W3E1_UNCMA Putative uncharacterized protein
           OS=Uncultured methanogenic archaeon RC-I GN=UNCMA_11410
           PE=4 SV=1
          Length = 613

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 428 FQYVWITFKNTSMFLFEKQRCGEPFDYYTNYLPFSMGTYTSATIYTSLDR 279
           F ++WITF    ++LF K       D +  Y PF +   +SA I   L R
Sbjct: 404 FMFIWITFPGP-LYLFNKLLYNFSIDRFAEYTPFLLAIVSSAGIAALLTR 452


>tr|B3MHA7|B3MHA7_DROAN GF13179 OS=Drosophila ananassae GN=GF13179
           PE=4 SV=1
          Length = 654

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -1

Query: 363 RAF*LLYKLPAIFYGHIYECHNLYFPRSVIIFILPIASHLVETLERMHITCQCPS 199
           + F ++YKL    YG +Y+  +      V I ++P+ S L E ++ + I  QC S
Sbjct: 27  KVFDIMYKLGEGSYGSVYKAQHKESSSIVAIKLVPVESDLHEIIKEISIMQQCDS 81


>tr|B8N6S5|B8N6S5_ASPFL Putative uncharacterized protein
           OS=Aspergillus flavus NRRL3357 GN=AFLA_016780 PE=4 SV=1
          Length = 474

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
 Frame = -1

Query: 282 SVIIFILPIASHLVETLERMHITCQC---PSVS--PWVSYPSHVL----GLCETILYMIV 130
           ++ +F L ++   V+ L R+  + QC   PS S  P   YP  +L       + +L    
Sbjct: 259 TLAVFTLKVSQEFVQILTRLLNSRQCHGIPSTSQKPVSLYPEPILLPLQSHQDNVLDSTS 318

Query: 129 SLWPPFFFNVMQGPFSVLLLEISSVFREM 43
           +  PPFF  V+Q   + L L I S+F ++
Sbjct: 319 ATSPPFFSAVLQPLLAPLALTIISIFTQL 347