NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945133
Clone id YMU02A01NGRL0008_F14
Library
Length 279
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_F14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGCCCAAGGTGGAGATGGAGTTGGTTGGTGCTTAAATTTTAGTGCCCGCCTTCTATGAAT
TTTGCGCATTGCTAGTTGTGCCTTCTATTGCGGATTCCTTCATTAGGAAGAGTAGGTTCA
GGAAGAACCTTGGCTGGCAGTTTAGTCCTGAGTGATACTGCTTCAAAGATTTTTGAAAAA
TAGGCATTGTAATACTGACGAATTGAGTTTCCTAAGTTTTGTATGGTGGAAGGCACAAGT
TTTATCATCGNNAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P53585
Definition sp|P53585|ACLY_CAEEL Probable ATP-citrate synthase OS=Caenorhabditis elegans
Align length 45
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945133|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_F14, 5'
         (252 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53585|ACLY_CAEEL Probable ATP-citrate synthase OS=Caenorhabd...    31   2.2  
sp|Q5MNU5|SCAP_PIG Sterol regulatory element-binding protein cle...    29   6.3  
sp|P25309|CAT_STAIN Chloramphenicol acetyltransferase OS=Staphyl...    29   6.3  
sp|P06135|CAT3_STAAU Chloramphenicol acetyltransferase OS=Staphy...    29   6.3  
sp|A0JPH4|SCAP_XENLA Sterol regulatory element-binding protein c...    29   8.3  
sp|A2RRU4|SCAP_RAT Sterol regulatory element-binding protein cle...    29   8.3  
sp|Q6GQT6|SCAP_MOUSE Sterol regulatory element-binding protein c...    29   8.3  
sp|Q12770|SCAP_HUMAN Sterol regulatory element-binding protein c...    29   8.3  
sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein c...    29   8.3  
sp|A6QM06|SCAP_BOVIN Sterol regulatory element-binding protein c...    29   8.3  

>sp|P53585|ACLY_CAEEL Probable ATP-citrate synthase
           OS=Caenorhabditis elegans GN=D1005.1 PE=2 SV=1
          Length = 1106

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 239 LVPSTIQNLGNSIRQYYNAYFSKIFEAVSLRTKLPAKVLPEPTLP 105
           LVP +  +LGN IRQ Y+       E VS +  +P   +P P +P
Sbjct: 785 LVPESFDDLGNKIRQTYD-------ELVSQQIIVPQPEVPPPAVP 822


>sp|Q5MNU5|SCAP_PIG Sterol regulatory element-binding protein
           cleavage-activating protein OS=Sus scrofa GN=SCAP PE=2
           SV=2
          Length = 1279

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 21  LVGA*ILVPAFYEFCALLVVPSIADSFIRKSRF 119
           L+G   LVPA  EFC   VV  ++D F++   F
Sbjct: 404 LIGYFTLVPAIQEFCLFAVVGLVSDFFLQMPFF 436


>sp|P25309|CAT_STAIN Chloramphenicol acetyltransferase
           OS=Staphylococcus intermedius GN=cat PE=3 SV=1
          Length = 215

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 209 NSIRQYYNAYFSKIFEAVSLRTKLPAKVLPEPTLP 105
           N+   +YN Y + +FE        P K +PE T+P
Sbjct: 106 NNFTSFYNNYKNDLFEYKDKEEMFPKKPIPENTIP 140


>sp|P06135|CAT3_STAAU Chloramphenicol acetyltransferase
           OS=Staphylococcus aureus GN=cat PE=2 SV=1
          Length = 215

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 209 NSIRQYYNAYFSKIFEAVSLRTKLPAKVLPEPTLP 105
           N+   +YN Y + +FE        P K +PE T+P
Sbjct: 106 NNFTSFYNNYKNDLFEYKDKEEMFPKKPIPENTIP 140


>sp|A0JPH4|SCAP_XENLA Sterol regulatory element-binding protein
           cleavage-activating protein OS=Xenopus laevis GN=scap
           PE=2 SV=1
          Length = 1311

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 21  LVGA*ILVPAFYEFCALLVVPSIADSFIR 107
           L+G   LVPA  EFC   VV  ++D F++
Sbjct: 402 LIGYFTLVPAIQEFCLFAVVGLVSDFFLQ 430


>sp|A2RRU4|SCAP_RAT Sterol regulatory element-binding protein
           cleavage-activating protein OS=Rattus norvegicus GN=Scap
           PE=2 SV=1
          Length = 1276

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 21  LVGA*ILVPAFYEFCALLVVPSIADSFIR 107
           L+G   LVPA  EFC   VV  ++D F++
Sbjct: 404 LIGYFTLVPAIQEFCLFAVVGLVSDFFLQ 432


>sp|Q6GQT6|SCAP_MOUSE Sterol regulatory element-binding protein
           cleavage-activating protein OS=Mus musculus GN=Scap PE=1
           SV=1
          Length = 1276

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 21  LVGA*ILVPAFYEFCALLVVPSIADSFIR 107
           L+G   LVPA  EFC   VV  ++D F++
Sbjct: 404 LIGYFTLVPAIQEFCLFAVVGLVSDFFLQ 432


>sp|Q12770|SCAP_HUMAN Sterol regulatory element-binding protein
           cleavage-activating protein OS=Homo sapiens GN=SCAP PE=1
           SV=4
          Length = 1279

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 21  LVGA*ILVPAFYEFCALLVVPSIADSFIR 107
           L+G   LVPA  EFC   VV  ++D F++
Sbjct: 404 LIGYFTLVPAIQEFCLFAVVGLVSDFFLQ 432


>sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein
           cleavage-activating protein OS=Cricetulus griseus
           GN=SCAP PE=1 SV=1
          Length = 1276

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 21  LVGA*ILVPAFYEFCALLVVPSIADSFIR 107
           L+G   LVPA  EFC   VV  ++D F++
Sbjct: 404 LIGYFTLVPAIQEFCLFAVVGLVSDFFLQ 432


>sp|A6QM06|SCAP_BOVIN Sterol regulatory element-binding protein
           cleavage-activating protein OS=Bos taurus GN=SCAP PE=2
           SV=1
          Length = 1278

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 21  LVGA*ILVPAFYEFCALLVVPSIADSFIR 107
           L+G   LVPA  EFC   VV  ++D F++
Sbjct: 404 LIGYFTLVPAIQEFCLFAVVGLVSDFFLQ 432
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945133|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_F14, 5'
         (252 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******