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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945135
Clone id YMU02A01NGRL0008_F17
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_F17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGTATCATGGACAGTTTGATGA
CTCTCGACCTAGAAATGGCAAGCCAATCACGGGCCAGGACATGAAGGCTGCAGTTGATTG
TGTGCTTGAAGGCAGAGAAATAACTTTTCCACAAAAGCCATGTGTTGGATGTAGCATTAA
ATGGGCATAAGAGAAGGCTGTGTATATGCGGATCTGTTACTACGTTCAGAACTCTATAAA
AGCTACCCTTCAAATCATGAGAATAAAGCTTTGAAAAAGCAAAGGTGGCAGCTAAAGTGA
TTGGATGACTGTCATAATGTATATTTTGAAATACATAATGGTGTGTCCCTTTATTGGTTA
AGTTGTGTACATAGTTTATACTCTTACTGGGCTATGTAGAAGTGCACTTTATTTGCCAAA
CAAGTGTTTTGAGTATAGTTTTATTGCAAAGGAAACTCTAGCCGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9PQV0
Definition sp|Q9PQV0|KPRS_UREPA Ribose-phosphate pyrophosphokinase OS=Ureaplasma parvum
Align length 46
Score (bit) 34.3
E-value 0.21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945135|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_F17, 5'
         (424 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PQV0|KPRS_UREPA Ribose-phosphate pyrophosphokinase OS=Ureap...    34   0.21 
sp|Q55C57|GLKA_DICDI Probable serine/threonine-protein kinase gl...    33   0.47 
sp|O95013|O4F21_HUMAN Olfactory receptor 4F21 OS=Homo sapiens GN...    30   4.0  
sp|Q02793|SKI8_YEAST Antiviral protein SKI8 OS=Saccharomyces cer...    30   5.2  
sp|P07206|PULA_KLEPN Pullulanase OS=Klebsiella pneumoniae GN=pul...    30   5.2  
sp|P07811|PULA_KLEAE Pullulanase OS=Klebsiella aerogenes GN=pulA...    30   5.2  
sp|Q8BXR9|OSBL6_MOUSE Oxysterol-binding protein-related protein ...    29   6.6  
sp|Q9BZF3|OSBL6_HUMAN Oxysterol-binding protein-related protein ...    29   6.6  
sp|Q4A0V8|UAFA_STAS1 Uro-adherence factor A OS=Staphylococcus sa...    29   8.8  
sp|Q8NGD2|OR4K2_HUMAN Olfactory receptor 4K2 OS=Homo sapiens GN=...    29   8.8  
sp|P34721|MT1B_MORBO Modification methylase MboIB OS=Moraxella b...    29   8.8  
sp|O31550|ACOC_BACSU Dihydrolipoyllysine-residue acetyltransfera...    29   8.8  

>sp|Q9PQV0|KPRS_UREPA Ribose-phosphate pyrophosphokinase
           OS=Ureaplasma parvum GN=prs PE=3 SV=1
          Length = 330

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = -2

Query: 144 PFNATSNTWLLWKSYFSAFKHTINCSLHVLARDWLAISRSRVIKLS 7
           PF++    W+L K YFSA+K + N  + +++ D+  + R+R I ++
Sbjct: 144 PFDSLEAVWVLMKHYFSAYKDSSN--ITIVSPDYGGVKRAREISIA 187


>sp|Q55C57|GLKA_DICDI Probable serine/threonine-protein kinase glkA
           OS=Dictyostelium discoideum GN=glkA PE=3 SV=1
          Length = 473

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -2

Query: 288 QNIHYDSHPITLAATFAFSKLYSHDLKGSFYRVLNVVTDPHIHSLLLCPFNATSNTWLL 112
           QN+ +D  P TLA+     +L  + +K  FY++   +   HIHS  +C  + T N  LL
Sbjct: 160 QNLVFDFIPYTLASLLKKRQLSINFIKVLFYQLCQAI--KHIHSKAICHRDITPNNILL 216


>sp|O95013|O4F21_HUMAN Olfactory receptor 4F21 OS=Homo sapiens
           GN=OR4F21 PE=2 SV=2
          Length = 312

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 234 SKLYSHDLKGSFYRVLNVVTDPHIHS 157
           S LY   + G+ + V +V TDPH+HS
Sbjct: 32  SVLYVASITGNIFIVFSVTTDPHLHS 57


>sp|Q02793|SKI8_YEAST Antiviral protein SKI8 OS=Saccharomyces
           cerevisiae GN=SKI8 PE=1 SV=1
          Length = 397

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 381 VWQIKCTST*PSKSINYVHNLTNKGTHHY-VFQNIHYDSHPITLAATFAFS 232
           VW  K       K  +Y H +   G HH  V Q I  D+  + L AT +FS
Sbjct: 40  VWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90


>sp|P07206|PULA_KLEPN Pullulanase OS=Klebsiella pneumoniae GN=pulA
           PE=1 SV=2
          Length = 1090

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 14/53 (26%)
 Frame = -2

Query: 270 SHPITL-AATFAFSKLYSHDLKGSFYRVLNV-------------VTDPHIHSL 154
           SHP+T  +A+ A+S     DLKG+FYR                 VTDP+ HSL
Sbjct: 339 SHPMTRDSASGAWSWQGGSDLKGAFYRYAMTVYHPQSRKVEQYEVTDPYAHSL 391


>sp|P07811|PULA_KLEAE Pullulanase OS=Klebsiella aerogenes GN=pulA
           PE=1 SV=1
          Length = 1096

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 14/53 (26%)
 Frame = -2

Query: 270 SHPITL-AATFAFSKLYSHDLKGSFYRVLNV-------------VTDPHIHSL 154
           SHP+T  +A+ A+S     DLKG+FYR                 VTDP+ HSL
Sbjct: 349 SHPMTRDSASGAWSWQGGSDLKGAFYRYAMTVYHPQSRKVEQYEVTDPYAHSL 401


>sp|Q8BXR9|OSBL6_MOUSE Oxysterol-binding protein-related protein 6
           OS=Mus musculus GN=Osbpl6 PE=2 SV=1
          Length = 959

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 207 PSNHENKALKKQRWQLK*LDDCHNVYFEIHNGVSLY 314
           P  HE   LKK++W LK     H  +F + NG+  Y
Sbjct: 86  PDRHEGFMLKKRKWPLK---GWHKRFFVLDNGMLKY 118


>sp|Q9BZF3|OSBL6_HUMAN Oxysterol-binding protein-related protein 6
           OS=Homo sapiens GN=OSBPL6 PE=1 SV=1
          Length = 934

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 207 PSNHENKALKKQRWQLK*LDDCHNVYFEIHNGVSLY 314
           P  HE   LKK++W LK     H  +F + NG+  Y
Sbjct: 86  PDKHEGFMLKKRKWPLK---GWHKRFFVLDNGMLKY 118


>sp|Q4A0V8|UAFA_STAS1 Uro-adherence factor A OS=Staphylococcus
           saprophyticus subsp. saprophyticus (strain ATCC 15305 /
           DSM 20229) GN=uafA PE=4 SV=1
          Length = 2316

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 402 KTILKTLVWQIKCTST*PSKSINYVHNLTNKGTHHYVFQNIHYD 271
           KT+ K    + +  +T  +  +NY  N + +  +H VF N  Y+
Sbjct: 366 KTLAKPSTSKFRSANTRATNVVNYAANQSGRNVNHLVFANTSYE 409


>sp|Q8NGD2|OR4K2_HUMAN Olfactory receptor 4K2 OS=Homo sapiens
           GN=OR4K2 PE=2 SV=1
          Length = 314

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 237 FSKLYSHDLKGSFYRVLNVVTDPHIHS 157
           FS LY   + G+   V+ V+ DPH+HS
Sbjct: 31  FSLLYVATMVGNSLIVITVIVDPHLHS 57
tr_hit_id A9S0R5
Definition tr|A9S0R5|A9S0R5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 49
Score (bit) 82.0
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945135|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_F17, 5'
         (424 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S0R5|A9S0R5_PHYPA Predicted protein OS=Physcomitrella paten...    82   1e-14
tr|A9TDQ4|A9TDQ4_PHYPA Predicted protein OS=Physcomitrella paten...    80   5e-14
tr|B8LP17|B8LP17_PICSI Putative uncharacterized protein OS=Picea...    79   8e-14
tr|B6U038|B6U038_MAIZE Thiol-disulfide isomerase and thioredoxin...    79   8e-14
tr|B4FIV2|B4FIV2_MAIZE Putative uncharacterized protein OS=Zea m...    79   8e-14
tr|A9NSW0|A9NSW0_PICSI Putative uncharacterized protein OS=Picea...    79   8e-14
tr|A9NPM4|A9NPM4_PICSI Putative uncharacterized protein OS=Picea...    79   8e-14
tr|Q7F229|Q7F229_ORYSJ Os07g0260300 protein OS=Oryza sativa subs...    77   4e-13
tr|B8B514|B8B514_ORYSI Putative uncharacterized protein OS=Oryza...    77   4e-13
tr|A7NSI5|A7NSI5_VITVI Chromosome chr18 scaffold_1, whole genome...    74   3e-12
tr|B2J9Q8|B2J9Q8_NOSP7 Alkyl hydroperoxide reductase/ Thiol spec...    74   4e-12
tr|A9EBK0|A9EBK0_9FLAO Putative uncharacterized protein OS=Kordi...    74   5e-12
tr|Q92MN6|Q92MN6_RHIME Putative uncharacterized protein OS=Rhizo...    73   8e-12
tr|Q3M910|Q3M910_ANAVT Putative uncharacterized protein OS=Anaba...    73   8e-12
tr|Q8YZE7|Q8YZE7_ANASP All0513 protein OS=Anabaena sp. (strain P...    72   1e-11
tr|Q5KZG6|Q5KZG6_GEOKA Hypothetical conserved protein OS=Geobaci...    71   3e-11
tr|B7Y6Z1|B7Y6Z1_9BACI Alkyl hydroperoxide reductase/ Thiol spec...    71   3e-11
tr|A6C0V6|A6C0V6_9PLAN Putative uncharacterized protein OS=Planc...    71   3e-11
tr|Q10XZ0|Q10XZ0_TRIEI Redoxin OS=Trichodesmium erythraeum (stra...    70   7e-11
tr|A8YK69|A8YK69_MICAE Similar to Q2JIZ8_SYNJB Hypothetical prot...    69   1e-10
tr|Q8DI04|Q8DI04_THEEB Tlr1788 protein OS=Thermosynechococcus el...    69   1e-10
tr|B1X0U0|B1X0U0_CYAA5 Putative uncharacterized protein OS=Cyano...    69   1e-10
tr|B0JJ87|B0JJ87_MICAN Putative uncharacterized protein OS=Micro...    68   2e-10
tr|A4INE8|A4INE8_GEOTN Putative uncharacterized protein OS=Geoba...    68   2e-10
tr|B7K6B1|B7K6B1_SYNP8 Alkyl hydroperoxide reductase/ Thiol spec...    68   2e-10
tr|B4BJZ4|B4BJZ4_9BACI Alkyl hydroperoxide reductase/ Thiol spec...    68   2e-10
tr|A3IT66|A3IT66_9CHRO Putative uncharacterized protein OS=Cyano...    68   2e-10
tr|Q2VBS6|Q2VBS6_9BACT Thiol-disulfide isomerase and thioredoxin...    67   3e-10
tr|Q7TZP2|Q7TZP2_MYCBO Putative uncharacterized protein Mb1761c ...    67   4e-10
tr|Q2SQ47|Q2SQ47_HAHCH Thiol-disulfide isomerase and thioredoxin...    67   4e-10

>tr|A9S0R5|A9S0R5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_207554 PE=4 SV=1
          Length = 151

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 32/49 (65%), Positives = 42/49 (85%)
 Frame = +1

Query: 1   YHGQFDDSRPRNGKPITGQDMKAAVDCVLEGREITFPQKPCVGCSIKWA 147
           YHGQ+DDSRP N  P+TG+D++ A++CVL GR I+FPQ+P +GCSIKWA
Sbjct: 98  YHGQYDDSRPGNDIPVTGRDIREAIECVLSGRRISFPQRPSIGCSIKWA 146


>tr|A9TDQ4|A9TDQ4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_144006 PE=4 SV=1
          Length = 158

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 32/53 (60%), Positives = 43/53 (81%)
 Frame = +1

Query: 1   YHGQFDDSRPRNGKPITGQDMKAAVDCVLEGREITFPQKPCVGCSIKWA*EKA 159
           YHG+FD+SRPR+  P+TG+D++ A+DCVL G  +T PQ+P +GCSIKWA  KA
Sbjct: 98  YHGRFDESRPRSNVPVTGRDIREAIDCVLTGSPVTIPQRPSIGCSIKWAPGKA 150


>tr|B8LP17|B8LP17_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 193

 Score = 79.3 bits (194), Expect = 8e-14
 Identities = 32/48 (66%), Positives = 39/48 (81%)
 Frame = +1

Query: 1   YHGQFDDSRPRNGKPITGQDMKAAVDCVLEGREITFPQKPCVGCSIKW 144
           YHGQFDDSRP N KP+TG D++ A+DC+L G+ I+  QKP VGCSIKW
Sbjct: 140 YHGQFDDSRPNNNKPVTGSDLRQALDCILSGQPISSVQKPSVGCSIKW 187


>tr|B6U038|B6U038_MAIZE Thiol-disulfide isomerase and thioredoxins
           OS=Zea mays PE=2 SV=1
          Length = 242

 Score = 79.3 bits (194), Expect = 8e-14
 Identities = 32/48 (66%), Positives = 38/48 (79%)
 Frame = +1

Query: 1   YHGQFDDSRPRNGKPITGQDMKAAVDCVLEGREITFPQKPCVGCSIKW 144
           YHGQFDDSRP N  P+TG+D+  A+DC L G+E+ F QKP VGCSIKW
Sbjct: 193 YHGQFDDSRPSNNVPVTGRDLSRAIDCALSGQELPFVQKPSVGCSIKW 240


>tr|B4FIV2|B4FIV2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 98

 Score = 79.3 bits (194), Expect = 8e-14
 Identities = 32/48 (66%), Positives = 38/48 (79%)
 Frame = +1

Query: 1   YHGQFDDSRPRNGKPITGQDMKAAVDCVLEGREITFPQKPCVGCSIKW 144
           YHGQFDDSRP N  P+TG+D+  A+DC L G+E+ F QKP VGCSIKW
Sbjct: 49  YHGQFDDSRPSNNVPVTGRDLSRAIDCALSGQELPFVQKPSVGCSIKW 96


>tr|A9NSW0|A9NSW0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 193

 Score = 79.3 bits (194), Expect = 8e-14
 Identities = 32/48 (66%), Positives = 39/48 (81%)
 Frame = +1

Query: 1   YHGQFDDSRPRNGKPITGQDMKAAVDCVLEGREITFPQKPCVGCSIKW 144
           YHGQFDDSRP N KP+TG D++ A+DC+L G+ I+  QKP VGCSIKW
Sbjct: 140 YHGQFDDSRPNNNKPVTGSDLRQALDCILSGQPISSVQKPSVGCSIKW 187


>tr|A9NPM4|A9NPM4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 193

 Score = 79.3 bits (194), Expect = 8e-14
 Identities = 32/48 (66%), Positives = 39/48 (81%)
 Frame = +1

Query: 1   YHGQFDDSRPRNGKPITGQDMKAAVDCVLEGREITFPQKPCVGCSIKW 144
           YHGQFDDSRP N KP+TG D++ A+DC+L G+ I+  QKP VGCSIKW
Sbjct: 140 YHGQFDDSRPNNNKPVTGSDLRQALDCILSGQPISSVQKPSVGCSIKW 187


>tr|Q7F229|Q7F229_ORYSJ Os07g0260300 protein OS=Oryza sativa subsp.
           japonica GN=OJ1370_E02.126 PE=2 SV=1
          Length = 252

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = +1

Query: 1   YHGQFDDSRPRNGKPITGQDMKAAVDCVLEGREITFPQKPCVGCSIKW 144
           YHGQFDDSRP N  P+TG+D+  A+DC L G+E+ F  KP VGCSIKW
Sbjct: 203 YHGQFDDSRPSNNVPVTGRDLSRAIDCALSGQELPFVPKPSVGCSIKW 250


>tr|B8B514|B8B514_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25570 PE=4 SV=1
          Length = 232

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = +1

Query: 1   YHGQFDDSRPRNGKPITGQDMKAAVDCVLEGREITFPQKPCVGCSIKW 144
           YHGQFDDSRP N  P+TG+D+  A+DC L G+E+ F  KP VGCSIKW
Sbjct: 183 YHGQFDDSRPSNNVPVTGRDLSRAIDCALSGQELPFVPKPSVGCSIKW 230


>tr|A7NSI5|A7NSI5_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014275001
           PE=4 SV=1
          Length = 246

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = +1

Query: 1   YHGQFDDSRPRNGKPITGQDMKAAVDCVLEGREITFPQKPCVGCSIKW 144
           YHGQFDDSRP N   +TG+D+  A+DCVL G+ I+  QKP VGCSIKW
Sbjct: 195 YHGQFDDSRPSNNVRVTGRDLSLAIDCVLSGQPISLVQKPSVGCSIKW 242