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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945144
Clone id YMU02A01NGRL0008_G05
Library
Length 396
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_G05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTATATGTAGCTCAATGTGGAGGACAAGTAGATAGGCTTATGGTGGTGGGTATTGTGGT
TTAATATGGAATGGTGGAGTGGAACATGAATCGATCTATGAAAGGTCCAGATCTGCTTGC
GAGTAGTCTCGATTGCTATTAGTGTTTGTGCCAAGGCTGGCAAAGGGGTTCATAATTTCA
TTAGACATCTTTTGGTGGTGCTTGCATCCACACGACCTGTGTCCTCTGTTTTTTCGCGTA
GATCTGCGCATCGCTTGGCCTTCATTTTTCATGTAACCACTTCGCTGGATTTTACAGGGA
GGCAAAACACATTCTTGATCTCATATTGATAAATTTTAAAGCTATTTGACCACTATTATG
CAGCTCANAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8PMP0
Definition sp|Q8PMP0|SYM_XANAC Methionyl-tRNA synthetase OS=Xanthomonas axonopodis pv. citri
Align length 41
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945144|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_G05, 5'
         (368 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8PMP0|SYM_XANAC Methionyl-tRNA synthetase OS=Xanthomonas axo...    30   2.9  
sp|Q3BVP1|SYM_XANC5 Methionyl-tRNA synthetase OS=Xanthomonas cam...    30   4.9  
sp|Q8PAY7|SYM_XANCP Methionyl-tRNA synthetase OS=Xanthomonas cam...    29   6.4  
sp|Q4USM5|SYM_XANC8 Methionyl-tRNA synthetase OS=Xanthomonas cam...    29   6.4  
sp|Q80WE1|FMR1_RAT Fragile X mental retardation protein 1 homolo...    29   6.4  
sp|P35922|FMR1_MOUSE Fragile X mental retardation protein 1 homo...    29   6.4  
sp|P31916|MAT2_EUGGR Maturase-like protein 2 OS=Euglena gracilis...    29   8.3  

>sp|Q8PMP0|SYM_XANAC Methionyl-tRNA synthetase OS=Xanthomonas
           axonopodis pv. citri GN=metG PE=3 SV=1
          Length = 694

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 224 LCFFA*ICASLGLHFSCNHFAGFYREAKHILDLILINFKAI 346
           LC F  +CA +G +F  +  AG   E  H +   ++NF  +
Sbjct: 261 LCSFKTLCAQMGENFEAHLVAGTQTELHHFIGKDIVNFHGL 301


>sp|Q3BVP1|SYM_XANC5 Methionyl-tRNA synthetase OS=Xanthomonas
           campestris pv. vesicatoria (strain 85-10) GN=metG PE=3
           SV=1
          Length = 694

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 224 LCFFA*ICASLGLHFSCNHFAGFYREAKHILDLILINFKAI 346
           LC F  +CA +G  F+ +  AG   E  H +   ++NF  +
Sbjct: 261 LCSFKTLCAQMGEDFASHLVAGTQTELHHFIGKDIVNFHGL 301


>sp|Q8PAY7|SYM_XANCP Methionyl-tRNA synthetase OS=Xanthomonas
           campestris pv. campestris GN=metG PE=3 SV=1
          Length = 696

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 224 LCFFA*ICASLGLHFSCNHFAGFYREAKHILDLILINFKAI 346
           LC F  +CA +G  F  +  AG   E  H +   ++NF  +
Sbjct: 261 LCSFKTLCAQMGEDFQAHLAAGTQTELHHFIGKDIVNFHGL 301


>sp|Q4USM5|SYM_XANC8 Methionyl-tRNA synthetase OS=Xanthomonas
           campestris pv. campestris (strain 8004) GN=metG PE=3
           SV=1
          Length = 696

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 224 LCFFA*ICASLGLHFSCNHFAGFYREAKHILDLILINFKAI 346
           LC F  +CA +G  F  +  AG   E  H +   ++NF  +
Sbjct: 261 LCSFKTLCAQMGEDFQAHLAAGTQTELHHFIGKDIVNFHGL 301


>sp|Q80WE1|FMR1_RAT Fragile X mental retardation protein 1 homolog
           OS=Rattus norvegicus GN=Fmr1 PE=2 SV=2
          Length = 593

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -1

Query: 302 PPCKIQRS-GYMKNEGQAMRRSTR--KNRGHRSCGCKHHQKMSNEIMNPFASLGTNTNSN 132
           PP +  +  GY+ ++GQ M R +R  +NRGH   G  +    ++E  N   +   + +  
Sbjct: 429 PPNRTDKEKGYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNASETESDHRDEL 488

Query: 131 RDYSQA 114
            D+S A
Sbjct: 489 SDWSLA 494


>sp|P35922|FMR1_MOUSE Fragile X mental retardation protein 1 homolog
           OS=Mus musculus GN=Fmr1 PE=1 SV=1
          Length = 614

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -1

Query: 302 PPCKIQRS-GYMKNEGQAMRRSTR--KNRGHRSCGCKHHQKMSNEIMNPFASLGTNTNSN 132
           PP +  +  GY+ ++GQ M R +R  +NRGH   G  +    ++E  N   +   + +  
Sbjct: 450 PPNRTDKEKGYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNASETESDHRDEL 509

Query: 131 RDYSQA 114
            D+S A
Sbjct: 510 SDWSLA 515


>sp|P31916|MAT2_EUGGR Maturase-like protein 2 OS=Euglena gracilis
           GN=mat2 PE=4 SV=3
          Length = 758

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 177 FIRHLLVVLASTRPVSSVFSRRSAHRLAF-IFHVTTSLDFTGRQNTFLIS 323
           F +HL+++     PV S FS+R  ++L F  F+  +  +F+G+  +F  S
Sbjct: 561 FKKHLVLLYNYYSPVYSFFSKRQRYKLNFNSFNYYSFSNFSGQNRSFFSS 610
tr_hit_id B8PLC5
Definition tr|B8PLC5|B8PLC5_9APHY Predicted protein OS=Postia placenta Mad-698-R
Align length 68
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945144|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_G05, 5'
         (368 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8PLC5|B8PLC5_9APHY Predicted protein OS=Postia placenta Mad-...    35   1.4  
tr|Q8IJS7|Q8IJS7_PLAF7 QF122 antigen OS=Plasmodium falciparum (i...    34   4.2  
tr|Q7RGT4|Q7RGT4_PLAYO Putative uncharacterized protein PY04262 ...    33   7.1  
tr|A4H4Y6|A4H4Y6_LEIBR Putative uncharacterized protein OS=Leish...    33   9.3  

>tr|B8PLC5|B8PLC5_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_106012 PE=4 SV=1
          Length = 804

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = +3

Query: 63  NMEWWSGT*IDL*KVQICLRVVSIAISVCAKAGKGVHNFIRHLLVVLASTRPVSSVFSRR 242
           N +W     +D  ++     V+ I I V   AGK  H  I HL   L   RP ++ F+++
Sbjct: 447 NYQWARLNILDRNRLHHAAAVIRIRIEVPYIAGKPTHQIISHL--SLDHGRPSTANFAQK 504

Query: 243 SAHRLAFI 266
           +AHR+A I
Sbjct: 505 AAHRIAAI 512


>tr|Q8IJS7|Q8IJS7_PLAF7 QF122 antigen OS=Plasmodium falciparum
           (isolate 3D7) GN=PF10_0115 PE=4 SV=1
          Length = 1139

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -1

Query: 320 DQECVLPPCKIQRSGYMKNEGQAMRRSTRKNRGHRSCGCKHHQKMSNEIMNPFASLGTNT 141
           ++ CV+   ++ + G  KNEGQA +++   N  ++  G K          N    +  + 
Sbjct: 84  EENCVIKSKEVVKGGDQKNEGQAKKKNNNNNNNNKKKGTKE---------NDMDKINQSG 134

Query: 140 NSNRDYSQAD 111
           N+N D  +A+
Sbjct: 135 NTNDDKKKAN 144


>tr|Q7RGT4|Q7RGT4_PLAYO Putative uncharacterized protein PY04262
            OS=Plasmodium yoelii yoelii GN=PY04262 PE=4 SV=1
          Length = 2023

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -1

Query: 320  DQECVLPPCKIQRSGYMKNEGQAMRRSTRKNRGHRSCGCKHHQKMSNEIMNPFASLGTNT 141
            DQ C +   ++      K + + + +S  KN+   + GCK    ++N+I      L  +T
Sbjct: 1861 DQICYMSEQELNFKDLQKIKSKQVHKSILKNKNVNTNGCKKETTLNNKIPTDILFLSNDT 1920

Query: 140  NSNRD 126
            N ++D
Sbjct: 1921 NLSKD 1925


>tr|A4H4Y6|A4H4Y6_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM07_V2.0420 PE=4 SV=1
          Length = 646

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
 Frame = -1

Query: 305 LPPCKIQRSGYMKNEGQA-------MRRSTRKNRGHRSCGCKHHQKMSNEIMNPFASLGT 147
           LPP ++  +  M ++ +A       +  S  + R H  CG +    + +  ++P  S G 
Sbjct: 189 LPPVRVGAAREMLHDRRAVSGVSLTLSHSALRARSHTECGVQRSLNLGSSSLHPLLSAGL 248

Query: 146 NTNSNRDYSQADLDLS*IDSCSTPPFHIKPQYPP 45
           +      Y  A L    + + S  P    P  PP
Sbjct: 249 HATQPPLYGGAHLSRLAMTAASDRPARAAPSAPP 282