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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945148
Clone id YMU02A01NGRL0008_G09
Library
Length 303
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_G09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ATCTATTCCAAGGGTTTTGGTTGCCCTGTTTGTAGGAGCTCAATTGAGCAAATCATCAAA
GTATACACTGTGTGAAAGTAGCCATAGCTCAATATCAAGACCGTATTCAAACACATTCTC
ATCTTTTCTCAAAGAAATGAGGTCATGTCCTGATCTGAAAGAATCGTGACATTCTTGTGC
AAGGAAAAGATGCAGGATGTGCTGTATAGTTCCTTGACAGGATGTTGAGGTAGATCCTCA
CTTTTTACAGAAATAGACACAGAATTTAAGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
■■Homology search results ■■ -
sp_hit_id Q6KAS7
Definition sp|Q6KAS7|ZN521_MOUSE Zinc finger protein 521 OS=Mus musculus
Align length 45
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945148|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_G09, 5'
         (273 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6KAS7|ZN521_MOUSE Zinc finger protein 521 OS=Mus musculus GN...    30   4.9  
sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2      29   8.4  
sp|Q6P3V7|GNN_RAT Tetratricopeptide repeat protein GNN OS=Rattus...    29   8.4  

>sp|Q6KAS7|ZN521_MOUSE Zinc finger protein 521 OS=Mus musculus
            GN=Znf521 PE=2 SV=2
          Length = 1311

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 231  TSTSCQGTIQHILHLFLAQECHDSFRSGHDLISLRKDENVFEYGL 97
            +S    G  QH+  L+    C   FRS  DL+ L  D N   YGL
Sbjct: 1050 SSVQTTGRGQHVQKLYKCASCLKEFRSKQDLVKL--DINGLPYGL 1092


>sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2
          Length = 22152

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 243   K*GSTSTSCQGTIQHILHLFLAQECHDSFRSGHDLISLRKDENVFEYGLD 94
             K  +T  S +G +QH+L     +     F  G  LISLR +++    G+D
Sbjct: 21739 KGSATFNSTEGVLQHLLRPLFQKSSMGPFYLGCQLISLRPEKDGAATGVD 21788


>sp|Q6P3V7|GNN_RAT Tetratricopeptide repeat protein GNN OS=Rattus
           norvegicus GN=Gnn PE=2 SV=2
          Length = 1309

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = -1

Query: 237 GSTSTSCQGTIQHILHLFLAQECHDSFRSGHDLISLRKDENVFEYGLDIELWLLSHSV 64
           GST  SC   I  ++H F+ +  H +     ++  L +D NV  + L IE+++ + S+
Sbjct: 373 GSTCESCD--IMSVMHYFIMELQHRANGPQLEMDFLNEDSNVLVFSLLIEVFMAAISL 428
tr_hit_id A9SXH9
Definition tr|A9SXH9|A9SXH9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 24
Score (bit) 42.4
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945148|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_G09, 5'
         (273 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SXH9|A9SXH9_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9SAM3|A9SAM3_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.045
tr|Q9LTC1|Q9LTC1_ARATH Similarity to ankyrin like protein OS=Ara...    38   0.22 
tr|Q94AX6|Q94AX6_ARATH AT3g23280/K14B15_17 OS=Arabidopsis thalia...    38   0.22 
tr|Q8L9Z0|Q8L9Z0_ARATH Putative uncharacterized protein OS=Arabi...    38   0.22 
tr|Q4FE47|Q4FE47_ARATH At3g23280 OS=Arabidopsis thaliana PE=2 SV=1     38   0.22 
tr|A9TAZ5|A9TAZ5_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.22 
tr|A7NXC9|A7NXC9_VITVI Chromosome chr5 scaffold_2, whole genome ...    37   0.65 
tr|A5BSQ6|A5BSQ6_VITVI Putative uncharacterized protein OS=Vitis...    37   0.65 
tr|Q9FPH0|Q9FPH0_ARATH AT4g14360 (At4g14365) (Ankyrin homolog) O...    36   1.1  
tr|Q8LAN6|Q8LAN6_ARATH Putative uncharacterized protein OS=Arabi...    36   1.1  
tr|Q7XI08|Q7XI08_ORYSJ Os07g0446100 protein OS=Oryza sativa subs...    36   1.1  
tr|Q7XI07|Q7XI07_ORYSJ Auxin-regulated protein-like protein OS=O...    36   1.1  
tr|A3BJA9|A3BJA9_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|A2YKU2|A2YKU2_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|B4F8Z4|B4F8Z4_MAIZE Protein binding protein OS=Zea mays PE=2 ...    35   1.5  
tr|B6KRJ6|B6KRJ6_TOXGO Putative uncharacterized protein OS=Toxop...    34   4.1  
tr|Q0FY23|Q0FY23_9RHIZ Putative uncharacterized protein OS=Fulvi...    33   7.0  

>tr|A9SXH9|A9SXH9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_189440 PE=4 SV=1
          Length = 451

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 16/24 (66%), Positives = 22/24 (91%)
 Frame = +1

Query: 1   IYSKGFGCPVCRSSIEQIIKVYTV 72
           I  KG+GCPVCR++I+Q++KVYTV
Sbjct: 428 IKEKGWGCPVCRTAIQQVVKVYTV 451


>tr|A9SAM3|A9SAM3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_182911 PE=4 SV=1
          Length = 473

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +1

Query: 1   IYSKGFGCPVCRSSIEQIIKVYTV 72
           I  KG+GCPVCR++I+Q+IKVY V
Sbjct: 450 IKEKGWGCPVCRTAIQQLIKVYAV 473


>tr|Q9LTC1|Q9LTC1_ARATH Similarity to ankyrin like protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 454

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   IYSKGFGCPVCRSSIEQIIKVYTV 72
           I SK +GCPVCR+ I+Q+IK+Y V
Sbjct: 431 IKSKNWGCPVCRAKIDQVIKLYRV 454


>tr|Q94AX6|Q94AX6_ARATH AT3g23280/K14B15_17 OS=Arabidopsis thaliana
           GN=At3g23280 PE=2 SV=1
          Length = 438

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   IYSKGFGCPVCRSSIEQIIKVYTV 72
           I SK +GCPVCR+ I+Q+IK+Y V
Sbjct: 415 IKSKNWGCPVCRAKIDQVIKLYRV 438


>tr|Q8L9Z0|Q8L9Z0_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 462

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   IYSKGFGCPVCRSSIEQIIKVYTV 72
           I SK +GCPVCR+ I+Q+IK+Y V
Sbjct: 439 IKSKNWGCPVCRAKIDQVIKLYRV 462


>tr|Q4FE47|Q4FE47_ARATH At3g23280 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 462

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   IYSKGFGCPVCRSSIEQIIKVYTV 72
           I SK +GCPVCR+ I+Q+IK+Y V
Sbjct: 439 IKSKNWGCPVCRAKIDQVIKLYRV 462


>tr|A9TAZ5|A9TAZ5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_142779 PE=4 SV=1
          Length = 364

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   IYSKGFGCPVCRSSIEQIIKVYTV 72
           I +  +GCPVCRS+I+QIIKVY V
Sbjct: 341 IKATNWGCPVCRSAIDQIIKVYAV 364


>tr|A7NXC9|A7NXC9_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020279001
           PE=4 SV=1
          Length = 455

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 13/24 (54%), Positives = 21/24 (87%)
 Frame = +1

Query: 1   IYSKGFGCPVCRSSIEQIIKVYTV 72
           I +K +GCPVCR+ I+Q++K+Y+V
Sbjct: 432 IKAKKWGCPVCRAKIDQVVKLYSV 455


>tr|A5BSQ6|A5BSQ6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_013890 PE=4 SV=1
          Length = 500

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 13/24 (54%), Positives = 21/24 (87%)
 Frame = +1

Query: 1   IYSKGFGCPVCRSSIEQIIKVYTV 72
           I +K +GCPVCR+ I+Q++K+Y+V
Sbjct: 477 IKAKKWGCPVCRAKIDQVVKLYSV 500


>tr|Q9FPH0|Q9FPH0_ARATH AT4g14360 (At4g14365) (Ankyrin homolog)
           OS=Arabidopsis thaliana GN=AT4g14360/dl3220c PE=2 SV=1
          Length = 376

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   IYSKGFGCPVCRSSIEQIIKVYTV 72
           I +K  GCPVCR++I+Q+IK+Y V
Sbjct: 353 IENKKMGCPVCRANIDQVIKLYHV 376