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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945153
Clone id YMU02A01NGRL0008_G14
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_G14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ATCAGTTCTCAAATAATGTTGATGCGCTAACAAAAAAGGCAGGTCAAGCTAGTGACCTGA
CCATCAGCATCAGTTGATGATGAAAAGAGGAATGATTTGGACACACAAGTAACTGTTTTA
TTTCTCTATGGCCTAGCAGCTGAGTATGTGGTGGTGTTGGAGTGCTGAGATAGGCGGTTG
GTGATGGTGACGCTACAGGTTTTGATAATTTTCTTGCCAATATTGGTAAAGTGAACAATT
TCAGCGGTGAAGTTGTTTGTTCCTGGCGATTATTTACTCACAAGACTCACCATTCAATCA
CCATATCAGGCCCCAACATATTATGCACCATACCTCTGCAGGAAGTGGGAAACAAAGCTT
CTATCTTTGTTCTCTGGGCTCCCTTTTTTGGGTGCTTTTTTGTTTTTTTGTTTTTTCGGT
TAGGGGACACATTATGCTTTGTTCTGGATTAGATTCAAGGATAGACGTCTAAGTATGTCC
CAAACTTTACAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9VK71
Definition sp|Q9VK71|PDM2B_DROME POU domain protein 2, isoform B OS=Drosophila melanogaster
Align length 69
Score (bit) 31.2
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945153|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_G14, 5'
         (462 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VK71|PDM2B_DROME POU domain protein 2, isoform B OS=Drosoph...    31   2.3  
sp|P31369|PDM2A_DROME POU domain protein 2, isoform A OS=Drosoph...    31   2.3  
sp|Q5RDC8|K0528_PONAB Uncharacterized protein KIAA0528 homolog O...    30   5.0  
sp|Q86YS7|K0528_HUMAN Uncharacterized protein KIAA0528 OS=Homo s...    30   5.0  
sp|Q810W7|MAST1_RAT Microtubule-associated serine/threonine-prot...    30   5.1  
sp|Q7TPS5|K0528_MOUSE Uncharacterized protein KIAA0528 OS=Mus mu...    30   6.5  
sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subuni...    30   6.7  
sp|P70365|NCOA1_MOUSE Nuclear receptor coactivator 1 OS=Mus musc...    30   6.7  
sp|Q1IZX0|NUOD_DEIGD NADH-quinone oxidoreductase subunit D OS=De...    29   8.7  
sp|Q4PJW2|NCOA1_PIG Nuclear receptor coactivator 1 OS=Sus scrofa...    29   8.7  
sp|Q68FE6|FA65A_MOUSE Protein FAM65A OS=Mus musculus GN=Fam65a P...    29   8.7  

>sp|Q9VK71|PDM2B_DROME POU domain protein 2, isoform B OS=Drosophila
           melanogaster GN=pdm2 PE=2 SV=2
          Length = 893

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = -1

Query: 240 RQEQTTSPLKLFTLPILARKLSKPVASPSPTAYLSTP-TPPHTQLLGHREIKQLLVCPNH 64
           +Q+Q   PL  ++ P+    L  P  SP P    S   TPP++       +   ++ PN 
Sbjct: 588 KQQQREDPLPSYSTPLAKSPLRSPSLSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTPNT 647

Query: 63  SSFHHQLML 37
            S   Q  L
Sbjct: 648 PSMQQQPQL 656


>sp|P31369|PDM2A_DROME POU domain protein 2, isoform A OS=Drosophila
           melanogaster GN=pdm2 PE=1 SV=1
          Length = 498

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = -1

Query: 240 RQEQTTSPLKLFTLPILARKLSKPVASPSPTAYLSTP-TPPHTQLLGHREIKQLLVCPNH 64
           +Q+Q   PL  ++ P+    L  P  SP P    S   TPP++       +   ++ PN 
Sbjct: 193 KQQQREDPLPSYSTPLAKSPLRSPSLSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTPNT 252

Query: 63  SSFHHQLML 37
            S   Q  L
Sbjct: 253 PSMQQQPQL 261


>sp|Q5RDC8|K0528_PONAB Uncharacterized protein KIAA0528 homolog
           OS=Pongo abelii PE=2 SV=1
          Length = 1000

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = -3

Query: 238 PGTNNFTAEIVHFTNIGKKIIKTCSVTITNR 146
           PG NN+T+EI  FT++  ++I+  S+ +TN+
Sbjct: 713 PGINNWTSEIQMFTSV--RVIRLSSLNLTNQ 741


>sp|Q86YS7|K0528_HUMAN Uncharacterized protein KIAA0528 OS=Homo
           sapiens GN=KIAA0528 PE=1 SV=1
          Length = 1000

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = -3

Query: 238 PGTNNFTAEIVHFTNIGKKIIKTCSVTITNR 146
           PG NN+T+EI  FT++  ++I+  S+ +TN+
Sbjct: 713 PGINNWTSEIQMFTSV--RVIRLSSLNLTNQ 741


>sp|Q810W7|MAST1_RAT Microtubule-associated serine/threonine-protein
            kinase 1 OS=Rattus norvegicus GN=Mast1 PE=2 SV=1
          Length = 1570

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -1

Query: 240  RQEQTTSPLKLFTLPILARKLSKPVASPSPTAYLSTP--TPPHTQLLGHREIKQLLVCPN 67
            RQE   SPL L   P+L   + +P+AS    +   T   TPP     G R +++ L C  
Sbjct: 1335 RQE---SPLSLGADPLLPDGVQRPMASGKEDSAGGTEACTPPRATTPGSRTLERDLGCTR 1391

Query: 66   HSS 58
            H S
Sbjct: 1392 HQS 1394


>sp|Q7TPS5|K0528_MOUSE Uncharacterized protein KIAA0528 OS=Mus
           musculus GN=Kiaa0528 PE=1 SV=2
          Length = 1016

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 12/31 (38%), Positives = 23/31 (74%)
 Frame = -3

Query: 238 PGTNNFTAEIVHFTNIGKKIIKTCSVTITNR 146
           PG NN+T+EI  FT++  ++++  S+ +TN+
Sbjct: 713 PGINNWTSEIQMFTSV--RVVRLSSLNLTNQ 741


>sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subunit
           SNF5 OS=Saccharomyces cerevisiae GN=SNF5 PE=1 SV=2
          Length = 905

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -1

Query: 240 RQEQTTSPLKLFTLPILARKLSKPVASPSPTAYLSTPTPPHTQLLGHREIKQLLVCP 70
           +Q+QT+ P +    P    + S+P+A+ S T   STP PP      H +I Q+ + P
Sbjct: 66  QQQQTSPPPQTHQSPPPPPQQSQPIANQSAT---STPPPPPAPHNLHPQIGQVPLAP 119


>sp|P70365|NCOA1_MOUSE Nuclear receptor coactivator 1 OS=Mus musculus
            GN=Ncoa1 PE=1 SV=2
          Length = 1447

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -1

Query: 234  EQTTSPLKLFTLPILARKLSKPVASPSPTAYLSTP 130
            +Q T PL +   P L    S+P +SPSPTA LS P
Sbjct: 982  QQATPPLMMEDRPTL---YSQPYSSPSPTAGLSGP 1013


>sp|Q1IZX0|NUOD_DEIGD NADH-quinone oxidoreductase subunit D
           OS=Deinococcus geothermalis (strain DSM 11300) GN=nuoD
           PE=3 SV=1
          Length = 403

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -1

Query: 129 TPPHTQLLGHREIKQLLVCPNHSSFHHQLMLMV 31
           TPP +  L H EI  L V P H S H  L L+V
Sbjct: 7   TPPTSGALLHTEIMSLNVGPQHPSTHGVLRLVV 39


>sp|Q4PJW2|NCOA1_PIG Nuclear receptor coactivator 1 OS=Sus scrofa
            GN=NCOA1 PE=2 SV=1
          Length = 1440

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -1

Query: 234  EQTTSPLKLFTLPILARKLSKPVASPSPTAYLSTP 130
            +Q T PL +   P L    S+P +SPSPTA LS P
Sbjct: 976  QQATPPLMMEERPNL---YSQPYSSPSPTANLSGP 1007
tr_hit_id A8J0F8
Definition tr|A8J0F8|A8J0F8_CHLRE Predicted protein (Fragment) OS=Chlamydomonas reinhardtii
Align length 26
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945153|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_G14, 5'
         (462 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8J0F8|A8J0F8_CHLRE Predicted protein (Fragment) OS=Chlamydom...    34   4.1  
tr|B0EJG0|B0EJG0_ENTDI Putative uncharacterized protein OS=Entam...    34   4.1  
tr|Q7SXC2|Q7SXC2_DANRE cAMP responsive element binding protein 3...    33   5.4  
tr|B4NYU8|B4NYU8_DROYA GE20714 OS=Drosophila yakuba GN=GE20714 P...    33   7.0  
tr|A3CCM0|A3CCM0_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.1  
tr|B2IW91|B2IW91_NOSP7 Histidine kinase OS=Nostoc punctiforme (s...    33   9.2  
tr|A1CMW5|A1CMW5_ASPCL DUF803 domain protein OS=Aspergillus clav...    33   9.2  

>tr|A8J0F8|A8J0F8_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_148976 PE=4
           SV=1
          Length = 848

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -1

Query: 186 RKLSKPVASPSPTAYLSTPTPPHTQL 109
           RK   PV SPSPT   + P PP TQL
Sbjct: 623 RKKDAPVMSPSPTTAAAAPPPPQTQL 648


>tr|B0EJG0|B0EJG0_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_133420 PE=4 SV=1
          Length = 715

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 239 RLFTHKTHHSITISGPNILCTIPLQEVGNKASIFVLW 349
           R+  HK+H  I I+ P++LC  P+  +  K   +V++
Sbjct: 659 RITGHKSHEKIPINNPHLLCVFPVPIISEKDEYYVIY 695


>tr|Q7SXC2|Q7SXC2_DANRE cAMP responsive element binding protein
           3-like 3 OS=Danio rerio GN=creb3l3 PE=2 SV=1
          Length = 392

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = -1

Query: 156 SPTAYL-STPTPPHTQLLGHREI-KQLLVCPNHSS--FHHQLMLMVRS 25
           SPT  L ST TPP T  L H +I KQ  +CPN +    HH+  +M R+
Sbjct: 331 SPTLSLESTATPPPTSPLRHSQISKQTPLCPNLTGTLVHHRSSMMARA 378


>tr|B4NYU8|B4NYU8_DROYA GE20714 OS=Drosophila yakuba GN=GE20714 PE=4
           SV=1
          Length = 232

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 280 RPQHIMHHTSAGSGKQSFYLCSLGSLFWVLFCFFVFSVRGHIM 408
           R +H+   T   SG+  F+LC   ++ W++ CF+V S   H++
Sbjct: 19  RLEHVEVETEDLSGRSIFHLCV--NVLWIILCFYVLSKLTHLV 59


>tr|A3CCM0|A3CCM0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_033042 PE=4 SV=1
          Length = 458

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/42 (45%), Positives = 20/42 (47%)
 Frame = -1

Query: 231 QTTSPLKLFTLPILARKLSKPVASPSPTAYLSTPTPPHTQLL 106
           Q   PL L   P LAR+L  PV  P PTA    P  P   LL
Sbjct: 40  QLRQPLPLPLPPFLARQLGPPVGLPPPTAERWAPMRPPAALL 81


>tr|B2IW91|B2IW91_NOSP7 Histidine kinase OS=Nostoc punctiforme
           (strain ATCC 29133 / PCC 73102) GN=Npun_R1110 PE=4 SV=1
          Length = 373

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 173 FDNFLANIGKVNNFSGEVVCSWRLFTHKTHHSITISGPNI 292
           FDN L+N    +  SG + CSW++F  +    I+  GP +
Sbjct: 273 FDNILSNAVHFSPNSGTITCSWQVFQDEVLIKISDQGPGL 312


>tr|A1CMW5|A1CMW5_ASPCL DUF803 domain protein OS=Aspergillus
           clavatus GN=ACLA_098440 PE=4 SV=1
          Length = 599

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 170 GFDNFLANIGKVNNFSGEVVCSWRLFTHKTHHSITISGPN 289
           GF   L  +G V   SG +  SWRL    +H S+T+ GP+
Sbjct: 306 GFHAGLVALGTVILLSGVLCLSWRLEVIDSHASVTVGGPS 345