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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945156
Clone id YMU02A01NGRL0008_G17
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_G17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGGCTTCTTCCAGGTCATCAATAGAGCTTGCTGAGATCGTCCATTGATCGAGGTCGCCAT
GGCTGTTGCAACCGTTGCAACCTCCTCTCTCCACCTCGCTTGCTCCTCAAGCGCCGCGGG
AGAGTCCAAGGTTCTATCCCGCCGTGGTCCCTGCTTGCTAGCTCCCGCTCCTGGCCGGGC
TTCTCCTCTCAAGCTCGTCTCCGATGGCAGCCGCGTCTCTTTGAGTGCGGATGGAAAGAA
AGAGATCAGCCTTGCGGCACCGGCGGCCCTCGCTGTACTTGCTGCAGCAGTTATTCCAGA
TATGGCTGACGCTGTTGCTCCTGGAGTATCACCCTCGCTGAAGAACCTTCTGCTTACTGT
TGTAACAGGAGGTGTTGTCCTTGTTGCCATTGGAGGTGCCGTTGCTGCTGTCTCGACCTT
TGACCCTGTCAAGCGAAAGTGATTCTGCTAGTTGTGAGTAACACACATATGATGACATAT
TTTTTCAATG
■■Homology search results ■■ -
sp_hit_id A1AS43
Definition sp|A1AS43|ILVD_PELPD Dihydroxy-acid dehydratase OS=Pelobacter propionicus (strain DSM 2379)
Align length 35
Score (bit) 31.2
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945156|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_G17, 5'
         (490 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1AS43|ILVD_PELPD Dihydroxy-acid dehydratase OS=Pelobacter pr...    31   2.7  
sp|P41001|TOP2_PLAFK DNA topoisomerase 2 OS=Plasmodium falciparu...    30   5.9  
sp|Q54R73|Y5465_DICDI Uncharacterized protein DDB_G0283357 OS=Di...    30   7.8  
sp|Q54NM6|MOCS1_DICDI Molybdenum cofactor biosynthesis protein 1...    30   7.8  

>sp|A1AS43|ILVD_PELPD Dihydroxy-acid dehydratase OS=Pelobacter
           propionicus (strain DSM 2379) GN=ilvD PE=3 SV=1
          Length = 553

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 143 RGPCL--LAPAPGRASPLKLVSDGSRVSLSADGKK 241
           RGPC+  ++P   +  P+ L+ DG R+SL    ++
Sbjct: 471 RGPCIGHISPEAAQGGPIGLIQDGDRISLDIPARR 505


>sp|P41001|TOP2_PLAFK DNA topoisomerase 2 OS=Plasmodium falciparum
           (isolate K1 / Thailand) GN=TOP2 PE=3 SV=1
          Length = 1398

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -1

Query: 484 KNMSSYVCYSQLAESLSLDRVK-GRDSSNGTSNGNKDNTSCYNSKQKVLQRG*YSRSNSV 308
           K M+ YV +    E L+ D      D   G  NG     +   SK+ ++Q G  SR    
Sbjct: 114 KEMNIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSRKKEF 173

Query: 307 SHIWNNCCSKYSE 269
              W++  SK+SE
Sbjct: 174 KMTWSDNMSKFSE 186


>sp|Q54R73|Y5465_DICDI Uncharacterized protein DDB_G0283357
           OS=Dictyostelium discoideum GN=DDB_G0283357 PE=4 SV=1
          Length = 1247

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 412 DSSNGTSNGNKDNTSCYNSKQKVLQRG*YSRSNSVSHIWNNCCSKYS 272
           +SSN  +NGN +N + YNS   + +    + SN+ ++  N+  + Y+
Sbjct: 205 NSSNNNNNGNNNNNNNYNSFVNITKNNNNTNSNNYNNSTNSNNNGYN 251


>sp|Q54NM6|MOCS1_DICDI Molybdenum cofactor biosynthesis protein 1
           OS=Dictyostelium discoideum GN=mocs1 PE=3 SV=1
          Length = 630

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -1

Query: 403 NGTSNGNKDNTSCYNSKQKVLQRG*YSRSNSVSHIWNNCCSKYS-EGRRCRKADLFLSIR 227
           N  +N N +N +  NSK + +Q+  YS + +  ++ NN  S  + +G+     D+   I 
Sbjct: 418 NSNNNNNNNNNNNNNSKLQYIQQRNYSTNKNNQNLENNEFSHITKDGKLPTMVDISDKII 477

Query: 226 TQRDAAA 206
           T+R A A
Sbjct: 478 TKRTAHA 484
tr_hit_id A9STC1
Definition tr|A9STC1|A9STC1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 106
Score (bit) 50.1
E-value 6.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945156|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_G17, 5'
         (490 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9STC1|A9STC1_PHYPA Predicted protein OS=Physcomitrella paten...    50   6e-05
tr|A9TK82|A9TK82_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|A9TSL8|A9TSL8_PHYPA Predicted protein OS=Physcomitrella paten...    48   2e-04
tr|A9RVW4|A9RVW4_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|A9NTS2|A9NTS2_PICSI Putative uncharacterized protein OS=Picea...    45   0.002
tr|A5BCY2|A5BCY2_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A9NK10|A9NK10_PICSI Putative uncharacterized protein OS=Picea...    38   0.22 
tr|A3MVN7|A3MVN7_PYRCJ Putative uncharacterized protein OS=Pyrob...    36   1.1  
tr|Q86K33|Q86K33_DICDI Putative uncharacterized protein OS=Dicty...    35   1.9  
tr|Q54ZU4|Q54ZU4_DICDI RmlC-like cupin family protein OS=Dictyos...    35   1.9  
tr|A9PJ43|A9PJ43_POPJC Putative uncharacterized protein OS=Popul...    35   2.4  
tr|A9PIY2|A9PIY2_POPJC Putative uncharacterized protein OS=Popul...    35   2.4  
tr|Q9SKI3|Q9SKI3_ARATH Expressed protein (Putative PSII-X protei...    34   3.2  
tr|B6SXA1|B6SXA1_MAIZE Ultraviolet-B-repressible protein OS=Zea ...    34   3.2  
tr|B6SX50|B6SX50_MAIZE Ultraviolet-B-repressible protein OS=Zea ...    34   3.2  
tr|B4KFK1|B4KFK1_DROMO GI18042 OS=Drosophila mojavensis GN=GI180...    34   3.2  
tr|Q4DT25|Q4DT25_TRYCR Putative uncharacterized protein OS=Trypa...    34   4.2  
tr|A9PJ86|A9PJ86_POPJC Putative uncharacterized protein OS=Popul...    33   7.1  
tr|A9PE66|A9PE66_POPTR Putative uncharacterized protein OS=Popul...    33   7.1  
tr|Q0J8R8|Q0J8R8_ORYSJ Os04g0691000 protein (Fragment) OS=Oryza ...    33   9.3  

>tr|A9STC1|A9STC1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166457 PE=4 SV=1
          Length = 238

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 39/106 (36%), Positives = 49/106 (46%)
 Frame = +2

Query: 122 ESKVLSRRGPCLLAPAPGRASPLKLVSDGSRVSLSADGKKEISXXXXXXXXXXXXXXIPD 301
           E K LSR+G  L AP   RAS  ++V + SRV +SA    +                +P+
Sbjct: 138 EGKTLSRQGLALAAPP--RAS--RMVVNRSRVVMSAT-PSDNKVVSLTSLALLAAAVVPE 192

Query: 302 MADAVAPGVSPSLKNXXXXXXXXXXXXXXXXXXXXXXSTFDPVKRK 439
           +A+A  PGVSPSLKN                      STFDPVKRK
Sbjct: 193 IAEAAQPGVSPSLKNLLLSVVAGGTVLTVIGVAVAGVSTFDPVKRK 238


>tr|A9TK82|A9TK82_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170551 PE=4 SV=1
          Length = 126

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 35/106 (33%), Positives = 50/106 (47%)
 Frame = +2

Query: 122 ESKVLSRRGPCLLAPAPGRASPLKLVSDGSRVSLSADGKKEISXXXXXXXXXXXXXXIPD 301
           E K LSR+G  L A +P R +  ++  + SRV +SA   ++ +              +P+
Sbjct: 23  EGKTLSRQGLSLAAASPLRMAG-QVAMNRSRVVMSA-APQDKNVAGLTSLALLAAAVVPE 80

Query: 302 MADAVAPGVSPSLKNXXXXXXXXXXXXXXXXXXXXXXSTFDPVKRK 439
           +A+A  PG+SPSLKN                      STFDPVKRK
Sbjct: 81  IAEAAQPGISPSLKNLLLSVVAGGTVLTVIGVAVAGVSTFDPVKRK 126


>tr|A9TSL8|A9TSL8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171698 PE=4 SV=1
          Length = 140

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 16/122 (13%)
 Frame = +2

Query: 122 ESKVLSRRGPCLLAPAPGRASPLKLVSDGSRVSLS----------------ADGKKEISX 253
           E+K+LSR+G  L AP+  R+S  KL+++ SRV +S                A  + +   
Sbjct: 22  EAKILSRQGLALAAPSV-RSS--KLIANRSRVVMSNSLSSAAAEIVVSLGCASPQSDNKL 78

Query: 254 XXXXXXXXXXXXXIPDMADAVAPGVSPSLKNXXXXXXXXXXXXXXXXXXXXXXSTFDPVK 433
                        +P++A+A  PGVSPSLKN                      STFDPVK
Sbjct: 79  AALTSLAFLAAAVVPEIAEAAQPGVSPSLKNLLLSVVAGGVVVTVIGVAVAGVSTFDPVK 138

Query: 434 RK 439
           RK
Sbjct: 139 RK 140


>tr|A9RVW4|A9RVW4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161232 PE=4 SV=1
          Length = 125

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 30/105 (28%), Positives = 46/105 (43%)
 Frame = +2

Query: 125 SKVLSRRGPCLLAPAPGRASPLKLVSDGSRVSLSADGKKEISXXXXXXXXXXXXXXIPDM 304
           +K+ S +G  L  P  G+      +S+G+RVS+S   K+  +              +P++
Sbjct: 22  AKLPSHKGLALATPL-GKKQVSVAISNGNRVSMSLPAKENHNVMSLTGLALVAAAVVPEI 80

Query: 305 ADAVAPGVSPSLKNXXXXXXXXXXXXXXXXXXXXXXSTFDPVKRK 439
           A+A  PGVS SL+N                      STFDPV R+
Sbjct: 81  AEAAQPGVSDSLRNLLLSVLAGGVVISVIGVAVAGVSTFDPVSRR 125


>tr|A9NTS2|A9NTS2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 129

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 33/94 (35%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = +2

Query: 158 LAPAPGRASPLKLVSDGSRVSLSAD-GKKEISXXXXXXXXXXXXXXIPDMADAVAPGVSP 334
           L   P +    KL S+ SRV + A  GKKE S              IP++A+A   GVSP
Sbjct: 35  LFTTPNKLYSPKLASNRSRVVMHASQGKKEQSLAGLTSLALAAAMVIPEIAEAAGSGVSP 94

Query: 335 SLKNXXXXXXXXXXXXXXXXXXXXXXSTFDPVKR 436
           SLKN                      S FDPVKR
Sbjct: 95  SLKNFLLSIAAGGVVATAIAGAVIGVSNFDPVKR 128


>tr|A5BCY2|A5BCY2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_016134 PE=4 SV=1
          Length = 254

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 25/85 (29%), Positives = 40/85 (47%)
 Frame = -1

Query: 430 DRVKGRDSSNGTSNGNKDNTSCYNSKQKVLQRG*YSRSNSVSHIWNNCCSKYSEGRRCRK 251
           DR+KGR    G+S  ++D ++   S  K       S S  V  + +  CSK  E  R  +
Sbjct: 78  DRLKGRLRDEGSSRSHRDYSNSSTSANKRHASDLCSSSKRV--LEDGSCSKEEESLRDDE 135

Query: 250 ADLFLSIRTQRDAAAIGDELERRSP 176
            + FL+ R +R   A+G  ++   P
Sbjct: 136 VEEFLNSRVKRGRGAVGSRMDEAGP 160


>tr|A9NK10|A9NK10_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 135

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = +2

Query: 167 APGRASPLKLVSDG-SRVSLSADG---KKEISXXXXXXXXXXXXXXIPDMADAVAPGVSP 334
           +P + S  KLV +G SRV +       +++ +              IP+MA+A  PGVS 
Sbjct: 41  SPNKPSSSKLVGNGKSRVVMMGKDISEREQSNYAGLTAVALAAAMVIPEMAEAAVPGVSA 100

Query: 335 SLKNXXXXXXXXXXXXXXXXXXXXXXSTFDPVKR 436
           SLKN                      S+FDPVKR
Sbjct: 101 SLKNFLLSIASGSVVLGAIGVAVVGVSSFDPVKR 134


>tr|A3MVN7|A3MVN7_PYRCJ Putative uncharacterized protein
           OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1)
           GN=Pcal_1280 PE=4 SV=1
          Length = 471

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 134 LSRRG-PCLLAPAPGRASPLKLVSDGSRVSLSADGKKE 244
           L RRG  C + P PG ASPL+LV +G+ V +   G +E
Sbjct: 96  LLRRGFDCYVVPHPGIASPLRLVEEGNEVRVERGGARE 133


>tr|Q86K33|Q86K33_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum PE=4 SV=1
          Length = 757

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 412 DSSNGTSNGNKDNTSCYNSKQKVLQRG*YSRSNSVSHIWNNCCSKYSEGRRCRKADL 242
           +++NGTS  N  N + +N+  K      +S S+S +  W N  SK+    R  +A L
Sbjct: 565 NNNNGTSRSNSGNINNHNNNDKTTSSSTHSSSSSDASYWKNIASKFQTRLRNVEAAL 621


>tr|Q54ZU4|Q54ZU4_DICDI RmlC-like cupin family protein
           OS=Dictyostelium discoideum GN=DDB_0237668 PE=4 SV=2
          Length = 1048

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 412 DSSNGTSNGNKDNTSCYNSKQKVLQRG*YSRSNSVSHIWNNCCSKYSEGRRCRKADL 242
           +++NGTS  N  N + +N+  K      +S S+S +  W N  SK+    R  +A L
Sbjct: 565 NNNNGTSRSNSGNINNHNNNDKTTSSSTHSSSSSDASYWKNIASKFQTRLRNVEAAL 621