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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945165
Clone id YMU02A01NGRL0008_H02
Library
Length 313
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_H02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AACAGAGCAAAGAAGATTCGCGGCGTGAAAAAGTCGAAGGCCGGTGATGTGCAGAAGGGT
GGCAAGAAGAAATAGAGGAGCGGCGAACTAGACAATTAGTTTGAGATAACTAGGTTTCTC
CGGATGCAAAATTTTGAGGCATCTGTGAAAGTGTACAATTTTTAAGGTCGCTGAACCAAT
GTATGCTATTCATGGGTGTGCTGCTTGACAAGGAAAGACGAGTTCTACATAGATGACTCT
TGATTTTATCTATGCTCCAAGTGCTCGGGGCTGTGATTTTTGCNAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8LC83
Definition sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis thaliana
Align length 19
Score (bit) 36.2
E-value 0.052
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945165|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_H02, 5'
         (284 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis...    36   0.052
sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis...    36   0.052
sp|Q975G1|RL15E_SULTO 50S ribosomal protein L15e OS=Sulfolobus t...    30   3.7  
sp|Q4JB20|RL15E_SULAC 50S ribosomal protein L15e OS=Sulfolobus a...    30   4.9  

>sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis
           thaliana GN=RPS24B PE=2 SV=2
          Length = 133

 Score = 36.2 bits (82), Expect = 0.052
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +1

Query: 1   NRAKKIRGVKKSKAGDVQK 57
           NRAKKIRGVKK+KAGD +K
Sbjct: 114 NRAKKIRGVKKTKAGDTKK 132


>sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis
           thaliana GN=RPS24A PE=2 SV=1
          Length = 133

 Score = 36.2 bits (82), Expect = 0.052
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +1

Query: 1   NRAKKIRGVKKSKAGDVQK 57
           NRAKKIRGVKK+KAGD +K
Sbjct: 114 NRAKKIRGVKKTKAGDAKK 132


>sp|Q975G1|RL15E_SULTO 50S ribosomal protein L15e OS=Sulfolobus
           tokodaii GN=rpl15e PE=3 SV=1
          Length = 215

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 10  KKIRGVKKSKA--GDVQKGGKKK*RSGELDN*FEITRFLRMQNFE 138
           KK RG+ KS+   G V+   KKK +  E     E T++ R+QN++
Sbjct: 166 KKARGLLKSRGLKGTVKHKWKKKEKEREQKKRHEATKYYRLQNYD 210


>sp|Q4JB20|RL15E_SULAC 50S ribosomal protein L15e OS=Sulfolobus
           acidocaldarius GN=rpl15e PE=3 SV=1
          Length = 217

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 10  KKIRGVKKSKA--GDVQKGGKKK*RSGELDN*FEITRFLRMQN 132
           +K RG+ KS+   G VQ+  KKK +  +L    E TR+ R+Q+
Sbjct: 167 QKSRGLTKSRGLKGTVQRKWKKKQKERQLKRRHEATRYYRLQH 209
tr_hit_id B7FMK4
Definition tr|B7FMK4|B7FMK4_MEDTR Putative uncharacterized protein OS=Medicago truncatula
Align length 24
Score (bit) 43.5
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945165|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_H02, 5'
         (284 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7FMK4|B7FMK4_MEDTR Putative uncharacterized protein OS=Medic...    44   0.005
tr|B3TM47|B3TM47_ELAGV Structural constituent of ribosome OS=Ela...    43   0.007
tr|A5BH65|A5BH65_VITVI 40S ribosomal protein S24 OS=Vitis vinife...    42   0.015
tr|A7PUB7|A7PUB7_VITVI 40S ribosomal protein S24 OS=Vitis vinife...    41   0.034
tr|Q8W0C2|Q8W0C2_ORYSJ 40S ribosomal protein S24 OS=Oryza sativa...    37   0.65 
tr|Q6H541|Q6H541_ORYSJ 40S ribosomal protein S24 OS=Oryza sativa...    37   0.65 
tr|Q5Z9S4|Q5Z9S4_ORYSJ 40S ribosomal protein S24 OS=Oryza sativa...    37   0.65 
tr|Q0DBK8|Q0DBK8_ORYSJ 40S ribosomal protein S24 (Fragment) OS=O...    37   0.65 
tr|B8B3L8|B8B3L8_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.65 
tr|A3BCP7|A3BCP7_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.65 
tr|A3A4S5|A3A4S5_ORYSJ 40S ribosomal protein S24 OS=Oryza sativa...    37   0.65 
tr|A2ZXD8|A2ZXD8_ORYSJ 40S ribosomal protein S24 OS=Oryza sativa...    37   0.65 
tr|A2X2N6|A2X2N6_ORYSI 40S ribosomal protein S24 OS=Oryza sativa...    37   0.65 
tr|A2WUL8|A2WUL8_ORYSI 40S ribosomal protein S24 OS=Oryza sativa...    37   0.65 
tr|Q9FUL7|Q9FUL7_MAIZE 40S ribosomal protein S24 OS=Zea mays PE=...    36   0.84 
tr|B6TRB9|B6TRB9_MAIZE 40S ribosomal protein S24 OS=Zea mays PE=...    36   0.84 
tr|B6TQZ0|B6TQZ0_MAIZE 40S ribosomal protein S24 OS=Zea mays PE=...    36   0.84 
tr|B6T8Y2|B6T8Y2_MAIZE 40S ribosomal protein S24 OS=Zea mays PE=...    36   0.84 
tr|B6T018|B6T018_MAIZE 40S ribosomal protein S24 OS=Zea mays PE=...    36   0.84 
tr|B6SIX3|B6SIX3_MAIZE 40S ribosomal protein S24 OS=Zea mays PE=...    36   0.84 
tr|B4FJ27|B4FJ27_MAIZE 40S ribosomal protein S24 OS=Zea mays PE=...    36   0.84 
tr|A9NKX4|A9NKX4_PICSI 40S ribosomal protein S24 OS=Picea sitche...    36   0.84 
tr|A9NKN3|A9NKN3_PICSI 40S ribosomal protein S24 OS=Picea sitche...    36   0.84 
tr|A0A3A0|A0A3A0_ARTAN 40S ribosomal protein S24 (Fragment) OS=A...    36   0.84 
tr|A9PC59|A9PC59_POPTR 40S ribosomal protein S24 OS=Populus tric...    35   1.9  
tr|A9PC05|A9PC05_POPTR 40S ribosomal protein S24 OS=Populus tric...    35   1.9  
tr|A9PBL6|A9PBL6_POPTR 40S ribosomal protein S24 OS=Populus tric...    35   1.9  
tr|A9P8Z2|A9P8Z2_POPTR 40S ribosomal protein S24 OS=Populus tric...    35   1.9  
tr|Q4PBJ8|Q4PBJ8_USTMA Putative uncharacterized protein OS=Ustil...    33   5.5  
tr|B8PHQ4|B8PHQ4_9APHY 40S ribosomal protein S24 OS=Postia place...    33   7.2  

>tr|B7FMK4|B7FMK4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 137

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 20/24 (83%), Positives = 21/24 (87%)
 Frame = +1

Query: 1   NRAKKIRGVKKSKAGDVQKGGKKK 72
           NRAKKIRGVKK+KAGD  K GKKK
Sbjct: 114 NRAKKIRGVKKTKAGDAAKAGKKK 137


>tr|B3TM47|B3TM47_ELAGV Structural constituent of ribosome OS=Elaeis
           guineensis var. tenera PE=2 SV=1
          Length = 137

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = +1

Query: 1   NRAKKIRGVKKSKAGDVQKGGKKK 72
           NRAKK+RGVKK+KAGD  K GKKK
Sbjct: 114 NRAKKVRGVKKAKAGDAAKAGKKK 137


>tr|A5BH65|A5BH65_VITVI 40S ribosomal protein S24 OS=Vitis vinifera
           GN=GSVIVT00031119001 PE=3 SV=1
          Length = 137

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +1

Query: 1   NRAKKIRGVKKSKAGDVQKGGKKK 72
           NR+KK+RGVKK+KAGD  K GKKK
Sbjct: 114 NRSKKVRGVKKTKAGDAAKAGKKK 137


>tr|A7PUB7|A7PUB7_VITVI 40S ribosomal protein S24 OS=Vitis vinifera
           GN=GSVIVT00023734001 PE=3 SV=1
          Length = 137

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   NRAKKIRGVKKSKAGDVQKGGKKK 72
           NRAKK+RGVKK+KA D  K GKKK
Sbjct: 114 NRAKKVRGVKKTKASDAAKAGKKK 137


>tr|Q8W0C2|Q8W0C2_ORYSJ 40S ribosomal protein S24 OS=Oryza sativa
           subsp. japonica GN=P0690B02.40 PE=2 SV=1
          Length = 138

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   NRAKKIRGVKKSKAGDVQKGGKKK 72
           NRAKKIRGVKK+KAGD    GKKK
Sbjct: 118 NRAKKIRGVKKTKAGD---AGKKK 138


>tr|Q6H541|Q6H541_ORYSJ 40S ribosomal protein S24 OS=Oryza sativa
           subsp. japonica GN=OSJNBb0035N08.11 PE=3 SV=1
          Length = 138

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   NRAKKIRGVKKSKAGDVQKGGKKK 72
           NRAKKIRGVKK+KAGD    GKKK
Sbjct: 118 NRAKKIRGVKKTKAGD---AGKKK 138


>tr|Q5Z9S4|Q5Z9S4_ORYSJ 40S ribosomal protein S24 OS=Oryza sativa
           subsp. japonica GN=P0458E11.17 PE=3 SV=1
          Length = 138

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   NRAKKIRGVKKSKAGDVQKGGKKK 72
           NRAKKIRGVKK+KAGD    GKKK
Sbjct: 118 NRAKKIRGVKKTKAGD---AGKKK 138


>tr|Q0DBK8|Q0DBK8_ORYSJ 40S ribosomal protein S24 (Fragment)
           OS=Oryza sativa subsp. japonica GN=Os06g0555400 PE=3
           SV=1
          Length = 115

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   NRAKKIRGVKKSKAGDVQKGGKKK 72
           NRAKKIRGVKK+KAGD    GKKK
Sbjct: 95  NRAKKIRGVKKTKAGD---AGKKK 115


>tr|B8B3L8|B8B3L8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23353 PE=4 SV=1
          Length = 138

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   NRAKKIRGVKKSKAGDVQKGGKKK 72
           NRAKKIRGVKK+KAGD    GKKK
Sbjct: 118 NRAKKIRGVKKTKAGD---AGKKK 138


>tr|A3BCP7|A3BCP7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_020819 PE=4 SV=1
          Length = 166

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   NRAKKIRGVKKSKAGDVQKGGKKK 72
           NRAKKIRGVKK+KAGD    GKKK
Sbjct: 146 NRAKKIRGVKKTKAGD---AGKKK 166