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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945185
Clone id YMU02A01NGRL0008_I03
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_I03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GAAGGAGAGCTCGACGAGCTTGAGCGTGAAGAGTTCTTTAGGCTCAAAAAAATACAAGGG
TTTAAAAGGAGGGAGGTTGAGAAGCAGATGCTTTTAAATAAGAAACATGCAGAAGTGGCA
GCTCTCAAGCAAACTGCATCACTAAATGGAGGAAGAGGCCAATCAGATAATAATTTGCTC
CAGCTAGAGGCTGATGCAGATGAGGACATTATCTTTTGAGAGGTCTTGCTTTCTCTGACT
CTTCTATTTTACAATGTATTTTGTCTTAATAGGCAAATATAGTATAAGAAAAAACTCTTA
GCTGTGGTTTATTTTGTTTGATAGAATTGGTAGATTGGGGTGGAGCTTTTGTGTCACAGT
TTAAGAGTTTTTTCAATGGTAAGCCTCATGGGGGATCATGGCTTCTAAATTCAACAAAGG
TCTGTGTCAATTTTCATACATAACGGGATCTTGAAAAAATGCCTTTTTTTTGTCTTTTAA
AAAAAAAAACGAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9XGM1
Definition sp|Q9XGM1|VATD_ARATH V-type proton ATPase subunit D OS=Arabidopsis thaliana
Align length 57
Score (bit) 42.7
E-value 0.0008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945185|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_I03, 5'
         (478 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9XGM1|VATD_ARATH V-type proton ATPase subunit D OS=Arabidops...    43   8e-04
sp|A7TLF7|RPIA_VANPO Ribose-5-phosphate isomerase OS=Vanderwalto...    32   1.1  
sp|P0AEA1|CSGF_SHIFL Curli production assembly/transport compone...    32   1.9  
sp|P0AE98|CSGF_ECOLI Curli production assembly/transport compone...    32   1.9  
sp|P0AE99|CSGF_ECOL6 Curli production assembly/transport compone...    32   1.9  
sp|P0AEA0|CSGF_ECO57 Curli production assembly/transport compone...    32   1.9  
sp|P0A202|CSGF_SALTY Curli production assembly/transport compone...    30   5.5  
sp|P0A203|CSGF_SALTI Curli production assembly/transport compone...    30   5.5  
sp|Q8CDG1|PIWL2_MOUSE Piwi-like protein 2 OS=Mus musculus GN=Piw...    30   5.6  
sp|Q6FTW5|GCN5_CANGA Histone acetyltransferase GCN5 OS=Candida g...    30   7.4  
sp|Q8TC59|PIWL2_HUMAN Piwi-like protein 2 OS=Homo sapiens GN=PIW...    29   9.6  

>sp|Q9XGM1|VATD_ARATH V-type proton ATPase subunit D OS=Arabidopsis
           thaliana GN=VATD PE=2 SV=2
          Length = 261

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 25/57 (43%), Positives = 32/57 (56%)
 Frame = +1

Query: 46  KKIQGFKRREVEKQMLLNKKHAEVAALKQTASLNGGRGQSDNNLLQLEADADEDIIF 216
           KKIQG+KRREVE+Q    K+ AE   L+  +   G    +  N L   A+ D DIIF
Sbjct: 205 KKIQGYKRREVERQAANAKEFAEEMVLEDISMQRGISINAARNFLVGGAEKDSDIIF 261


>sp|A7TLF7|RPIA_VANPO Ribose-5-phosphate isomerase
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=RKI1 PE=3 SV=1
          Length = 259

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 91  LLNKKHAEVAALKQTASLNGGRGQSDNNLLQLEADADE 204
           LLNK HA+ A ++Q  S   G   +DNN   ++AD  E
Sbjct: 176 LLNKLHAQTAVVRQGGSAKAGPVVTDNNNFIIDADFGE 213


>sp|P0AEA1|CSGF_SHIFL Curli production assembly/transport component
           csgF OS=Shigella flexneri GN=csgF PE=3 SV=1
          Length = 138

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 309 LFCLIELVDWGGAFVSQFKS-FFNGKPHGGSWLLNSTK 419
           L  LI  + W G    QF++  F G P+ G++LLNS +
Sbjct: 9   LLMLISPLSWAGTMTFQFRNPNFGGNPNNGAFLLNSAQ 46


>sp|P0AE98|CSGF_ECOLI Curli production assembly/transport component
           csgF OS=Escherichia coli (strain K12) GN=csgF PE=4 SV=1
          Length = 138

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 309 LFCLIELVDWGGAFVSQFKS-FFNGKPHGGSWLLNSTK 419
           L  LI  + W G    QF++  F G P+ G++LLNS +
Sbjct: 9   LLMLISPLSWAGTMTFQFRNPNFGGNPNNGAFLLNSAQ 46


>sp|P0AE99|CSGF_ECOL6 Curli production assembly/transport component
           csgF OS=Escherichia coli O6 GN=csgF PE=3 SV=1
          Length = 138

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 309 LFCLIELVDWGGAFVSQFKS-FFNGKPHGGSWLLNSTK 419
           L  LI  + W G    QF++  F G P+ G++LLNS +
Sbjct: 9   LLMLISPLSWAGTMTFQFRNPNFGGNPNNGAFLLNSAQ 46


>sp|P0AEA0|CSGF_ECO57 Curli production assembly/transport component
           csgF OS=Escherichia coli O157:H7 GN=csgF PE=3 SV=1
          Length = 138

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 309 LFCLIELVDWGGAFVSQFKS-FFNGKPHGGSWLLNSTK 419
           L  LI  + W G    QF++  F G P+ G++LLNS +
Sbjct: 9   LLMLISPLSWAGTMTFQFRNPNFGGNPNNGAFLLNSAQ 46


>sp|P0A202|CSGF_SALTY Curli production assembly/transport component
           csgF OS=Salmonella typhimurium GN=csgF PE=4 SV=1
          Length = 138

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 309 LFCLIELVDWGGAFVSQFKS-FFNGKPHGGSWLLNSTK 419
           L  L   + W G    QF++  F G P+ GS+LLNS +
Sbjct: 9   LLMLFSPLTWAGNMTFQFRNPNFGGNPNNGSFLLNSAQ 46


>sp|P0A203|CSGF_SALTI Curli production assembly/transport component
           csgF OS=Salmonella typhi GN=csgF PE=3 SV=1
          Length = 138

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 309 LFCLIELVDWGGAFVSQFKS-FFNGKPHGGSWLLNSTK 419
           L  L   + W G    QF++  F G P+ GS+LLNS +
Sbjct: 9   LLMLFSPLTWAGNMTFQFRNPNFGGNPNNGSFLLNSAQ 46


>sp|Q8CDG1|PIWL2_MOUSE Piwi-like protein 2 OS=Mus musculus GN=Piwil2
           PE=1 SV=2
          Length = 971

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -2

Query: 285 ILYLPIKTKYIVK*KSQRKQD 223
           ILYLP+K + +V+ KSQRK D
Sbjct: 276 ILYLPVKLQQVVELKSQRKTD 296


>sp|Q6FTW5|GCN5_CANGA Histone acetyltransferase GCN5 OS=Candida
           glabrata GN=GCN5 PE=3 SV=1
          Length = 546

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +1

Query: 64  KRREVEKQMLLNKKHAEVAALKQTASLNGGRGQS----DNNLLQLEADADEDI 210
           KR++V+K    NKKHA+VAA +   S      +S    D  ++    D DE++
Sbjct: 17  KRQKVDKAESKNKKHADVAAERGEQSTEDHEDESQDKKDKKVVGDNRDEDEEV 69
tr_hit_id Q7XJX6
Definition tr|Q7XJX6|Q7XJX6_ORYSJ Os04g0643100 protein OS=Oryza sativa subsp. japonica
Align length 57
Score (bit) 45.8
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945185|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_I03, 5'
         (478 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XJX6|Q7XJX6_ORYSJ Os04g0643100 protein OS=Oryza sativa subs...    46   0.001
tr|Q25A69|Q25A69_ORYSA H0306F03.5 protein OS=Oryza sativa GN=H03...    46   0.001
tr|A3AXY5|A3AXY5_ORYSJ Putative uncharacterized protein OS=Oryza...    46   0.001
tr|A2XY57|A2XY57_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.001
tr|A9NMT3|A9NMT3_PICSI Putative uncharacterized protein OS=Picea...    45   0.001
tr|A9PGR2|A9PGR2_POPTR Putative uncharacterized protein OS=Popul...    43   0.007
tr|Q0WWD3|Q0WWD3_ARATH Vacuolar-type H+-ATPase (V-ATPase) subuni...    43   0.009
tr|A7PJQ0|A7PJQ0_VITVI Chromosome chr12 scaffold_18, whole genom...    42   0.012
tr|B6TH59|B6TH59_MAIZE Vacuolar ATP synthase subunit D 1 OS=Zea ...    41   0.026
tr|B4FVD6|B4FVD6_MAIZE Putative uncharacterized protein OS=Zea m...    41   0.026
tr|B4FDN9|B4FDN9_MAIZE Putative uncharacterized protein OS=Zea m...    41   0.034
tr|B6TZ18|B6TZ18_MAIZE Vacuolar ATP synthase subunit D 1 OS=Zea ...    37   0.37 
tr|A9TPG1|A9TPG1_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|Q6CQQ7|Q6CQQ7_KLULA KLLA0D15136p OS=Kluyveromyces lactis GN=K...    36   1.1  
tr|Q6ZF45|Q6ZF45_ORYSJ Os07g0562400 protein OS=Oryza sativa subs...    34   4.1  
tr|A3BL57|A3BL57_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.1  
tr|A2YMM9|A2YMM9_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.1  
tr|B4VP05|B4VP05_9CYAN Putative uncharacterized protein OS=Micro...    33   7.0  
tr|Q6BMI6|Q6BMI6_DEBHA DEHA2F05148p OS=Debaryomyces hansenii GN=...    33   7.0  
tr|A9TN49|A9TN49_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.2  

>tr|Q7XJX6|Q7XJX6_ORYSJ Os04g0643100 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0063C18.17 PE=2 SV=2
          Length = 269

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 24/57 (42%), Positives = 34/57 (59%)
 Frame = +1

Query: 46  KKIQGFKRREVEKQMLLNKKHAEVAALKQTASLNGGRGQSDNNLLQLEADADEDIIF 216
           KKIQG+K+RE+E+QM   K+ AE    ++ A   G    +  N+L    + DEDIIF
Sbjct: 213 KKIQGYKKREIERQMAAAKQFAEEQLAEEVALKRGISVGAATNMLVAGGERDEDIIF 269


>tr|Q25A69|Q25A69_ORYSA H0306F03.5 protein OS=Oryza sativa
           GN=H0306F03.5 PE=4 SV=1
          Length = 269

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 24/57 (42%), Positives = 34/57 (59%)
 Frame = +1

Query: 46  KKIQGFKRREVEKQMLLNKKHAEVAALKQTASLNGGRGQSDNNLLQLEADADEDIIF 216
           KKIQG+K+RE+E+QM   K+ AE    ++ A   G    +  N+L    + DEDIIF
Sbjct: 213 KKIQGYKKREIERQMAAAKQFAEEQLAEEVALKRGISVGAATNMLVAGGERDEDIIF 269


>tr|A3AXY5|A3AXY5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_015657 PE=4 SV=1
          Length = 249

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 24/57 (42%), Positives = 34/57 (59%)
 Frame = +1

Query: 46  KKIQGFKRREVEKQMLLNKKHAEVAALKQTASLNGGRGQSDNNLLQLEADADEDIIF 216
           KKIQG+K+RE+E+QM   K+ AE    ++ A   G    +  N+L    + DEDIIF
Sbjct: 193 KKIQGYKKREIERQMAAAKQFAEEQLAEEVALKRGISVGAATNMLVAGGERDEDIIF 249


>tr|A2XY57|A2XY57_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_17640 PE=4 SV=1
          Length = 269

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 24/57 (42%), Positives = 34/57 (59%)
 Frame = +1

Query: 46  KKIQGFKRREVEKQMLLNKKHAEVAALKQTASLNGGRGQSDNNLLQLEADADEDIIF 216
           KKIQG+K+RE+E+QM   K+ AE    ++ A   G    +  N+L    + DEDIIF
Sbjct: 213 KKIQGYKKREIERQMAAAKQFAEEQLAEEVALKRGISVGAATNMLVAGGERDEDIIF 269


>tr|A9NMT3|A9NMT3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 269

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 25/57 (43%), Positives = 33/57 (57%)
 Frame = +1

Query: 46  KKIQGFKRREVEKQMLLNKKHAEVAALKQTASLNGGRGQSDNNLLQLEADADEDIIF 216
           KKIQ +K+RE+E+QM   K  A+   L+  A   G       NLL +E + DEDIIF
Sbjct: 213 KKIQSYKKRELERQMESAKDFADEQVLENFALQKGISMGDAQNLLSMETEKDEDIIF 269


>tr|A9PGR2|A9PGR2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 198

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 24/57 (42%), Positives = 35/57 (61%)
 Frame = +1

Query: 46  KKIQGFKRREVEKQMLLNKKHAEVAALKQTASLNGGRGQSDNNLLQLEADADEDIIF 216
           KKIQGFK+RE+E+Q+   K+ AE    ++ +   G    S  N+L   ++ DEDIIF
Sbjct: 143 KKIQGFKKREIERQLAAAKQFAEGQVAEKVSLQKGISLNSAQNMLS-ASEKDEDIIF 198


>tr|Q0WWD3|Q0WWD3_ARATH Vacuolar-type H+-ATPase (V-ATPase) subunit D
           OS=Arabidopsis thaliana GN=At3g58730 PE=2 SV=1
          Length = 261

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 25/57 (43%), Positives = 32/57 (56%)
 Frame = +1

Query: 46  KKIQGFKRREVEKQMLLNKKHAEVAALKQTASLNGGRGQSDNNLLQLEADADEDIIF 216
           KKIQG+KRREVE+Q    K+ AE   L+  +   G    +  N L   A+ D DIIF
Sbjct: 205 KKIQGYKRREVERQAANAKEFAEEMVLEDISMQRGISINAARNFLVGGAEKDSDIIF 261


>tr|A7PJQ0|A7PJQ0_VITVI Chromosome chr12 scaffold_18, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018828001
           PE=4 SV=1
          Length = 261

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 23/57 (40%), Positives = 34/57 (59%)
 Frame = +1

Query: 46  KKIQGFKRREVEKQMLLNKKHAEVAALKQTASLNGGRGQSDNNLLQLEADADEDIIF 216
           KKIQG+K+RE+E+QM   K+ +E     + +   G    + +NLL    + DEDIIF
Sbjct: 205 KKIQGYKKREMERQMASAKEFSEDQFAGKVSLQKGISLNAAHNLLSAAMEKDEDIIF 261


>tr|B6TH59|B6TH59_MAIZE Vacuolar ATP synthase subunit D 1 OS=Zea
           mays PE=2 SV=1
          Length = 269

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 23/57 (40%), Positives = 32/57 (56%)
 Frame = +1

Query: 46  KKIQGFKRREVEKQMLLNKKHAEVAALKQTASLNGGRGQSDNNLLQLEADADEDIIF 216
           KKIQG+K+RE+E+QM   +  AE    +  A   G    +  NLL    + D+DIIF
Sbjct: 213 KKIQGYKKREIERQMAAARLFAEEQLAEDLALKRGISVGAAANLLVAGGEKDDDIIF 269


>tr|B4FVD6|B4FVD6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 269

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 23/57 (40%), Positives = 32/57 (56%)
 Frame = +1

Query: 46  KKIQGFKRREVEKQMLLNKKHAEVAALKQTASLNGGRGQSDNNLLQLEADADEDIIF 216
           KKIQG+K+RE+E+QM   +  AE    +  A   G    +  NLL    + D+DIIF
Sbjct: 213 KKIQGYKKREIERQMAAARLFAEEQLAEDLALKRGISVGAAANLLVAGGEKDDDIIF 269