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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945187
Clone id YMU02A01NGRL0008_I05
Library
Length 194
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_I05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TAACTTTGGAACACAAGTTTGAAAAACAATCTTTCTTTTTTTTGATGAACCCTCGCAAGA
ATCTGTGGAAACAAACAGGAGCATAAAACTATTCCTACTTCCTCATCTCCAACTCAGGGA
ACTGCCAATTGATTAATTGCTTGGATAACTGGGCTTGCCAAACAATAAGTGTGAGGTTTT
CTCTGTAGACTATT
■■Homology search results ■■ -
sp_hit_id Q85FH6
Definition sp|Q85FH6|CCSA_ADICA Cytochrome c biogenesis protein ccsA OS=Adiantum capillus-veneris
Align length 64
Score (bit) 120.0
E-value 2.0e-27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945187|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_I05, 5'
         (194 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FH6|CCSA_ADICA Cytochrome c biogenesis protein ccsA OS=Adi...   120   2e-27
sp|A0A384|CCSA_COFAR Cytochrome c biogenesis protein ccsA OS=Cof...    34   0.20 
sp|P41650|CCSA_PINTH Cytochrome c biogenesis protein ccsA OS=Pin...    34   0.26 
sp|A6MM86|CCSA_BUXMI Cytochrome c biogenesis protein ccsA OS=Bux...    30   5.0  
sp|A7M9A9|CCSA_CUSRE Cytochrome c biogenesis protein ccsA OS=Cus...    29   6.5  
sp|Q2VED1|CCSA_SOLTU Cytochrome c biogenesis protein ccsA OS=Sol...    29   8.5  
sp|Q2MI51|CCSA_SOLLC Cytochrome c biogenesis protein ccsA OS=Sol...    29   8.5  
sp|Q2MID8|CCSA_SOLBU Cytochrome c biogenesis protein ccsA OS=Sol...    29   8.5  
sp|Q3BAH8|CCSA_PHAAO Cytochrome c biogenesis protein ccsA OS=Pha...    29   8.5  
sp|B1NWJ8|CCSA_MANES Cytochrome c biogenesis protein ccsA OS=Man...    29   8.5  

>sp|Q85FH6|CCSA_ADICA Cytochrome c biogenesis protein ccsA
           OS=Adiantum capillus-veneris GN=ccsA PE=2 SV=2
          Length = 316

 Score =  120 bits (301), Expect = 2e-27
 Identities = 57/64 (89%), Positives = 58/64 (90%)
 Frame = +3

Query: 3   TLEHKFEKQSFFFLMNPRKNLWKQTGA*NYSYFLISNSGNCQLINCLDNWACQTISVRFS 182
           TLEHKFEKQSFFFLMNPRKNLWKQTGA NYSYFLISNS  CQLINCLD WACQTIS+ FS
Sbjct: 171 TLEHKFEKQSFFFLMNPRKNLWKQTGAENYSYFLISNSRKCQLINCLDKWACQTISLGFS 230

Query: 183 L*TI 194
           L TI
Sbjct: 231 LLTI 234


>sp|A0A384|CCSA_COFAR Cytochrome c biogenesis protein ccsA OS=Coffea
           arabica GN=ccsA PE=3 SV=1
          Length = 322

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +3

Query: 27  QSFFFL----MNPRKNLWKQTGA*NYSYFLISNSGNCQLINCLDNWACQTISVRFSL*TI 194
           +SFFF+    MN R NL + T     S+F   N    QLI  LD W+ + IS+ F   TI
Sbjct: 182 ESFFFVEIEYMNERSNLLQNT-----SFFSAKNYYRSQLIQQLDYWSSRGISLGFIFLTI 236


>sp|P41650|CCSA_PINTH Cytochrome c biogenesis protein ccsA OS=Pinus
           thunbergii GN=ccsA PE=3 SV=1
          Length = 320

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +3

Query: 51  PRKNLW---KQTGA*NYS-YFLISNSGNCQLINCLDNWACQTISVRFSL*TI 194
           P +N +   KQ     Y+ YF  +N   CQLI  LD+W+ + I + FSL TI
Sbjct: 186 PNENFYSHEKQKSDLQYTVYFSSTNYRKCQLIKQLDHWSYRAIGLGFSLSTI 237


>sp|A6MM86|CCSA_BUXMI Cytochrome c biogenesis protein ccsA OS=Buxus
           microphylla GN=ccsA PE=3 SV=1
          Length = 321

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 48  NPRKNLWKQTGA*NYSYFLISNSGNCQLINCLDNWACQTISVRFSL*TI 194
           N R N+ +     N S+  + N    QLI  LDNW+ + IS+ F   TI
Sbjct: 192 NERSNVLR-----NVSFLSLRNYRRYQLIRQLDNWSYRVISLGFIFLTI 235


>sp|A7M9A9|CCSA_CUSRE Cytochrome c biogenesis protein ccsA
           OS=Cuscuta reflexa GN=ccsA PE=3 SV=1
          Length = 308

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +3

Query: 33  FFFLMNPRKNLWKQTGA*NYSYFLISNSGNCQLINCLDNWACQTISVRFSL*TI 194
           FFF  N    L+++    N ++F   N    QLI  LD W+ Q IS+ F   TI
Sbjct: 171 FFFKSN--NFLFREISYQNKNFFYAINYYKTQLIKELDFWSYQVISLGFIFLTI 222


>sp|Q2VED1|CCSA_SOLTU Cytochrome c biogenesis protein ccsA
           OS=Solanum tuberosum GN=ccsA PE=3 SV=1
          Length = 313

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 87  NYSYFLISNSGNCQLINCLDNWACQTISVRFSL*TI 194
           N S+F   N    QLI  LD W+ + IS+ F+  TI
Sbjct: 192 NTSFFCAKNYYRSQLIQQLDYWSYRVISLGFTFLTI 227


>sp|Q2MI51|CCSA_SOLLC Cytochrome c biogenesis protein ccsA
           OS=Solanum lycopersicum GN=ccsA PE=3 SV=1
          Length = 313

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 87  NYSYFLISNSGNCQLINCLDNWACQTISVRFSL*TI 194
           N S+F   N    QLI  LD W+ + IS+ F+  TI
Sbjct: 192 NTSFFCTKNYYRSQLIQQLDYWSYRVISLGFTFLTI 227


>sp|Q2MID8|CCSA_SOLBU Cytochrome c biogenesis protein ccsA
           OS=Solanum bulbocastanum GN=ccsA PE=3 SV=1
          Length = 313

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 87  NYSYFLISNSGNCQLINCLDNWACQTISVRFSL*TI 194
           N S+F   N    QLI  LD W+ + IS+ F+  TI
Sbjct: 192 NTSFFCAKNYYRSQLIQQLDYWSYRVISLGFTFLTI 227


>sp|Q3BAH8|CCSA_PHAAO Cytochrome c biogenesis protein ccsA
           OS=Phalaenopsis aphrodite subsp. formosana GN=ccsA PE=3
           SV=1
          Length = 321

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +3

Query: 24  KQSFFF----LMNPRKNLWKQTGA*NYSYFLISNSGNCQLINCLDNWACQTISVRFSL*T 191
           ++SFFF     +N + ++ K+T   ++  F        QLI  LD+W+ + IS+ F+  T
Sbjct: 182 RKSFFFGNMEYLNEKGSILKKTSLLSFKNFY-----KYQLIQHLDSWSYRVISLGFTFLT 236

Query: 192 I 194
           I
Sbjct: 237 I 237


>sp|B1NWJ8|CCSA_MANES Cytochrome c biogenesis protein ccsA
           OS=Manihot esculenta GN=ccsA PE=3 SV=1
          Length = 322

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 30  SFFF----LMNPRKNLWKQTGA*NYSYFLISNSGNCQLINCLDNWACQTISVRFSL*TI 194
           SFFF     M  RKN+ +     N S+    N    QLI  LD+W  + IS+ F   TI
Sbjct: 182 SFFFSEIQYMAERKNVLR-----NISFLSSRNYYRFQLIQQLDDWGYRIISIGFIFLTI 235
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945187|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_I05, 5'
         (194 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******