DK945201
Clone id YMU02A01NGRL0008_I21
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_I21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGTATCGTAGCGGGTATAGTT
TAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAGTTGAGGGATCGTATCTCGG
CTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAATATATGTTTTCTTATTATTT
CTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATTCATTTCAAGAACTAGGGAA
GATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATACTTGGTTTAATTTCTACTT
CCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTCTAAGATAGCTGACTCATCG
TCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGAATAAATAAATCCGGGTTTG
TCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTCGTTTCAACAACTCGGTGAG
ATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAAAATAAAGAACGAAAAAAAT
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 31.2
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945201|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_I21, 5'
(467 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 31 2.3
sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus ... 30 5.2
sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens ... 30 5.2
sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN... 30 5.2
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 30 5.2
sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegic... 30 6.8

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
Length = 455

Score = 31.2 bits (69), Expect = 2.3
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Frame = +2

Query: 248 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 394
L+ T+ +++KE+N+W+++ D + RI ++ K GIN SGF+ ++E
Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
GN=Mmp2 PE=2 SV=1
Length = 662

Score = 30.0 bits (66), Expect = 5.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2

Query: 145 WRNNKKTYIFCEDKVFSFS*FSRDTIPQLSKSLRD 41
W NKKTYIF DK + ++ + P K + D
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIAD 610


>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens
GN=MMP2 PE=1 SV=2
Length = 660

Score = 30.0 bits (66), Expect = 5.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2

Query: 145 WRNNKKTYIFCEDKVFSFS*FSRDTIPQLSKSLRD 41
W NKKTYIF DK + ++ + P K + D
Sbjct: 574 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIAD 608


>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus
GN=MMP2 PE=2 SV=1
Length = 661

Score = 30.0 bits (66), Expect = 5.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2

Query: 145 WRNNKKTYIFCEDKVFSFS*FSRDTIPQLSKSLRD 41
W NKKTYIF DK + ++ + P K + D
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIAD 609


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
burgdorferi GN=recB PE=3 SV=1
Length = 1169

Score = 30.0 bits (66), Expect = 5.2
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2

Query: 218 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 382
IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus
GN=Mmp2 PE=2 SV=2
Length = 662

Score = 29.6 bits (65), Expect = 6.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2

Query: 145 WRNNKKTYIFCEDKVFSFS*FSRDTIPQLSKSLRD 41
W NKKTYIF DK + ++ + P K + D
Sbjct: 576 WSKNKKTYIFSGDKFWRYNEVKKKMDPGFPKLIAD 610


tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 35.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945201|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_I21, 5'
(467 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 35 1.9
tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty... 33 9.4

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
Length = 319

Score = 35.0 bits (79), Expect = 1.9
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = -3

Query: 189 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 40
LK +++E+D ST + ++++F A +F+L VNL + R++ Q C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283


>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
Length = 955

Score = 32.7 bits (73), Expect = 9.4
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2

Query: 239 ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFVKIIEHLF 403
I+G ++ SGE+N E ++ DS +T IN+GK IN S + I F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796