DK945204
Clone id YMU02A01NGRL0008_I24
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_I24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
ATTTCACGCCATGGGTTTTTCTGAGTCATTGAGGCGCATTATCGTCAAGGATCCTGCTAT
CGCTTTCTCCTGCCTGATTGCTGGAGTCGGACTTTTGCTTCCGTTAGTGGTACCACCTAT
TCGAAGTGCCCTGTACAAAGGAGAGCCTGTTGAGCAGCCAAAGATCCAGGAGGTCATTTC
GGGGATGACCGGAAAGTCGTAGAACTTTTTACTTACCAATGACGTCAGGTCACCGAGTAT
GGTTTGCTCAAGAAAAGGCCAAAGCAATTTTTGGAGGAGTTACATTGCTAGCTGTTGAAA
ATGAAGCCAAATCCCTCTCTTATTAGATGGGTAGGTACTTGACATGGCATGCTCTTCCGA
TGGGCACTACTTTTGTCCATAAAATCACTCGGACGTCAAAATTTGTTGTGGTGCCTTTGT
CAGAGCTGTTTGGTGTATTTAATCTTTTCAGTAGGACGTAGTACTAATGTGGCAAGTGTG
AAAGTTTTGGTGCTTTCACAGTGGTAATAATCAGACTTGTCGAGT
■■Homology search results ■■ -
sp_hit_id Q5UQF0
Definition sp|Q5UQF0|YL484_MIMIV Putative ankyrin repeat protein L484 OS=Acanthamoeba polyphaga mimivirus
Align length 39
Score (bit) 33.9
E-value 0.49
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945204|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_I24, 5'
(525 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5UQF0|YL484_MIMIV Putative ankyrin repeat protein L484 OS=Ac... 34 0.49
sp|Q01134|CHKA_RAT Choline kinase alpha OS=Rattus norvegicus GN=... 30 9.2

>sp|Q5UQF0|YL484_MIMIV Putative ankyrin repeat protein L484
OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L484 PE=1
SV=1
Length = 1908

Score = 33.9 bits (76), Expect = 0.49
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1

Query: 240 ILGDLTSLVSKKFYDFPVIPEMTSWIFGCSTGSPLYRAL 124
I+G LT + K ++F + ++SWI+ ++ P YR++
Sbjct: 1225 IIGKLTDDILNKLFEFAIRQSVSSWIYNITSNDPRYRSI 1263


>sp|Q01134|CHKA_RAT Choline kinase alpha OS=Rattus norvegicus
GN=Chka PE=2 SV=2
Length = 453

Score = 29.6 bits (65), Expect = 9.2
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1

Query: 144 SPLYRALRIGGTTNGSKSPTPAIRQEKAIAGSLTIMRLNDSEKPMA 7
SPL L GG S +PTP + Q++ AG L +L +P+A
Sbjct: 14 SPLGLLLSCGG----SAAPTPGVGQQRDAAGELESKQLGGRSQPLA 55


tr_hit_id A9NL58
Definition tr|A9NL58|A9NL58_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 62
Score (bit) 47.4
E-value 0.0004
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945204|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_I24, 5'
(525 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NL58|A9NL58_PICSI Putative uncharacterized protein OS=Picea... 47 4e-04
tr|A7QWF4|A7QWF4_VITVI Chromosome undetermined scaffold_203, who... 44 0.006
tr|Q8GT82|Q8GT82_GOSBA Fiber protein Fb11 OS=Gossypium barbadens... 42 0.014
tr|A9PAD2|A9PAD2_POPTR Putative uncharacterized protein OS=Popul... 42 0.024
tr|B6SNA3|B6SNA3_MAIZE Fiber protein Fb11 OS=Zea mays PE=4 SV=1 41 0.032
tr|B4FKL9|B4FKL9_MAIZE Fiber protein Fb11 OS=Zea mays PE=4 SV=1 41 0.032
tr|Q9ZPY5|Q9ZPY5_ARATH Expressed protein (At2g46540/F11C10.23) (... 39 0.12
tr|Q5TKP1|Q5TKP1_ORYSJ Os05g0542100 protein OS=Oryza sativa subs... 38 0.35
tr|B8AW76|B8AW76_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.35
tr|B3R2V5|B3R2V5_CUPTR Putative diguanylate cyclase with Mase1 a... 38 0.36
tr|Q46XV6|Q46XV6_RALEJ PAS:GGDEF OS=Ralstonia eutropha (strain J... 35 3.0
tr|Q895A9|Q895A9_CLOTE Iron(III) dicitrate transport system perm... 34 4.0
tr|A1TXH4|A1TXH4_MARAV Putative phosphohistidine phosphatase, Si... 34 5.2
tr|B6MVK7|B6MVK7_BRAFL Putative uncharacterized protein OS=Branc... 33 8.8

>tr|A9NL58|A9NL58_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 65

Score = 47.4 bits (111), Expect = 4e-04
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +2

Query: 11 MGFSESLRRIIVKDPAIAFSCLIAXXXXXXXXXXXXIRSALYKGEPVEQPKIQEVISGMT 190
MGF++ LR IVK+P + SC I I ++ E V QP + +V++GMT
Sbjct: 1 MGFADKLRVFIVKEPVVFASCFIGGIGLILPAFVRPILDSMDSSEAVPQPSLNKVVAGMT 60

Query: 191 GK 196
GK
Sbjct: 61 GK 62


>tr|A7QWF4|A7QWF4_VITVI Chromosome undetermined scaffold_203, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00008632001 PE=4 SV=1
Length = 65

Score = 43.5 bits (101), Expect = 0.006
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +2

Query: 23 ESLRRIIVKDPAIAFSCLIAXXXXXXXXXXXXIRSALYKGEPVEQPKIQEVISGMTGK 196
E L+ +IV++P +A SC IA I +L + V QP + +V++GMTGK
Sbjct: 5 EKLKMLIVQEPVVAASCFIAGVGLFLPAVVRPILDSLETSKQVPQPALSDVVAGMTGK 62


>tr|Q8GT82|Q8GT82_GOSBA Fiber protein Fb11 OS=Gossypium barbadense
PE=4 SV=1
Length = 65

Score = 42.4 bits (98), Expect = 0.014
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +2

Query: 11 MGFSESLRRIIVKDPAIAFSCLIAXXXXXXXXXXXXIRSALYKGEPVEQPKIQEVISGMT 190
M + L+ +V++P +A SCLIA I +L + V QP +++V++G+T
Sbjct: 1 MAVMQKLKIFVVQEPVVAASCLIAGFGLFLPAVVRPILDSLESSKQVPQPALRDVVAGVT 60

Query: 191 GK 196
GK
Sbjct: 61 GK 62


>tr|A9PAD2|A9PAD2_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 67

Score = 41.6 bits (96), Expect = 0.024
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2

Query: 11 MGFSESLRRIIVKDPAIAFSCLIAXXXXXXXXXXXXIRSALY--KGEPVEQPKIQEVISG 184
M E LR + ++P +A SCLIA I +L K P +QP I +V++G
Sbjct: 1 MPVMEKLRMFVAQEPVVAASCLIAGIGLFLPAVVRPILDSLEGSKHVPEKQPSISDVLAG 60

Query: 185 MTGK 196
MTGK
Sbjct: 61 MTGK 64


>tr|B6SNA3|B6SNA3_MAIZE Fiber protein Fb11 OS=Zea mays PE=4 SV=1
Length = 64

Score = 41.2 bits (95), Expect = 0.032
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +2

Query: 11 MGFSESLRRIIVKDPAIAFSCLIAXXXXXXXXXXXXIRSALYKGEPVEQPKIQEVISGMT 190
M E L+ +VK+P +A SCLIA I + E V P + +V++G+T
Sbjct: 1 MAVMEKLKIFVVKEPVVAASCLIAGFGLFLPAVVRPILDSWETAEKVPPPPLNDVVAGVT 60

Query: 191 GK 196
GK
Sbjct: 61 GK 62


>tr|B4FKL9|B4FKL9_MAIZE Fiber protein Fb11 OS=Zea mays PE=4 SV=1
Length = 64

Score = 41.2 bits (95), Expect = 0.032
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +2

Query: 11 MGFSESLRRIIVKDPAIAFSCLIAXXXXXXXXXXXXIRSALYKGEPVEQPKIQEVISGMT 190
M E L+ +VK+P +A SCLIA I + E V P + +V++G+T
Sbjct: 1 MAVMEKLKIFVVKEPVVAASCLIAGFGLFLPAVVRPILDSWQTAEQVPPPLLNDVVAGVT 60

Query: 191 GK 196
GK
Sbjct: 61 GK 62


>tr|Q9ZPY5|Q9ZPY5_ARATH Expressed protein (At2g46540/F11C10.23)
(Putative uncharacterized protein) (F11C10.23/F11C10.23)
OS=Arabidopsis thaliana GN=At2g46540 PE=4 SV=2
Length = 65

Score = 39.3 bits (90), Expect = 0.12
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2

Query: 11 MGFSESLRRIIVKDPAIAFSCLIAXXXXXXXXXXXXIRSALYKGEPVEQPKIQEVISGMT 190
M E LR + ++P +A SCLI I +L + V+ P + +VI+G+T
Sbjct: 1 MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVT 60

Query: 191 GK 196
GK
Sbjct: 61 GK 62


>tr|Q5TKP1|Q5TKP1_ORYSJ Os05g0542100 protein OS=Oryza sativa subsp.
japonica GN=OJ1362_G11.16 PE=4 SV=1
Length = 65

Score = 37.7 bits (86), Expect = 0.35
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2

Query: 11 MGFSESLRRIIVKDPAIAFSCLIAXXXXXXXXXXXXIRSALYKGEPVEQPKIQEVISGMT 190
MG E L+ VK+P + SCLIA + + + V P + +V++G+T
Sbjct: 1 MGVMEKLKIFAVKEPVVTASCLIAGFGLFLPAVVRPMLDSWETAKQVPPPALNDVVAGVT 60

Query: 191 GK 196
GK
Sbjct: 61 GK 62


>tr|B8AW76|B8AW76_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_20832 PE=4 SV=1
Length = 65

Score = 37.7 bits (86), Expect = 0.35
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2

Query: 11 MGFSESLRRIIVKDPAIAFSCLIAXXXXXXXXXXXXIRSALYKGEPVEQPKIQEVISGMT 190
MG E L+ VK+P + SCLIA + + + V P + +V++G+T
Sbjct: 1 MGVMEKLKIFAVKEPVVTASCLIAGFGLFLPAVVRPMLDSWETAKQVPPPALNDVVAGVT 60

Query: 191 GK 196
GK
Sbjct: 61 GK 62


>tr|B3R2V5|B3R2V5_CUPTR Putative diguanylate cyclase with Mase1 and
PAS domains OS=Cupriavidus taiwanensis (strain R1 / LMG
19424) GN=RALTA_A0656 PE=4 SV=1
Length = 1127

Score = 37.7 bits (86), Expect = 0.36
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Frame = -1

Query: 192 PVIPEMTSWIFGCSTGSPLYRALRIGGTTNGSKSP----------TPAIRQEKAIAGSLT 43
P+ ++T W +TG PL R RI + G P TPA QE A+ SLT
Sbjct: 587 PIAEQLTGWTMAAATGLPLERVFRIVDESTGEPIPSPVEACLRTLTPAYLQEGAVLQSLT 646

Query: 42 IMR--LNDSEKPM 10
R + DS P+
Sbjct: 647 GERHDVQDSAAPV 659