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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945206
Clone id YMU02A01NGRL0008_J04
Library
Length 205
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_J04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATGCCGAGTGCGTGCTGCGTTATATTCCCTGTTTGTAGTCCTAAAAAGGAAGTTTTGCT
TCAATTCTGCTTCTTGAGCATATTTTATTCCTTTCTTGTATTTCTGAGGAATGCCTTATA
CCTCATGAGTTTGGCGACATTTTTCATGAAAGCTGTTTTCTTATTCTATTTTACTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8NGD3
Definition sp|Q8NGD3|OR4K5_HUMAN Olfactory receptor 4K5 OS=Homo sapiens
Align length 40
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945206|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_J04, 5'
         (175 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NGD3|OR4K5_HUMAN Olfactory receptor 4K5 OS=Homo sapiens GN=...    30   2.8  
sp|P87280|YD290_YEAST Putative uncharacterized protein YDR290W O...    29   8.3  

>sp|Q8NGD3|OR4K5_HUMAN Olfactory receptor 4K5 OS=Homo sapiens
           GN=OR4K5 PE=2 SV=1
          Length = 323

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 20  VIFPVCSPKKEVLLQFCFLSIFYSFLVFLRNALYLMSLAT 139
           V+  +CS +K  L  FCF S+ Y+ +V L N L ++++ +
Sbjct: 13  VLLGLCSSQKLQLFYFCFFSVLYTVIV-LGNLLIILTVTS 51


>sp|P87280|YD290_YEAST Putative uncharacterized protein YDR290W
           OS=Saccharomyces cerevisiae GN=YDR290W PE=5 SV=1
          Length = 109

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +2

Query: 35  CSPKKEV----LLQFCFLSIFYSFLVFLRNALYLMSLATFFMKAVFL 163
           CS +K +    +L +CFL IFY F+       Y++ LA  F   +FL
Sbjct: 41  CSEEKGIPSILILDYCFLQIFYLFVKTFFACTYIIMLA--FQVYIFL 85
tr_hit_id A8Y3P0
Definition tr|A8Y3P0|A8Y3P0_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae
Align length 46
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945206|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_J04, 5'
         (175 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8Y3P0|A8Y3P0_CAEBR Putative uncharacterized protein OS=Caeno...    33   5.4  

>tr|A8Y3P0|A8Y3P0_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG23542 PE=4 SV=2
          Length = 339

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 17  CVIFPVCSPKKEVLLQFCFLSIFYSFL-VFLRNALYLMSLATFFMK 151
           C + PV  P K +L+ FC  ++FYS + +FLR  +++     F M+
Sbjct: 34  CKVSPVKGPYKSILIFFCCFTMFYSAVEMFLRPIIHIYDDTLFVMQ 79