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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945213
Clone id YMU02A01NGRL0008_J12
Library
Length 340
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_J12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGCTGGGGGAGTAGTAGCTGATGATCAAGCTCTCACAGGAGCTGTGGATACTGAAGGAG
GAAACATTGAGGTTGTATTGCATGAGCAAGTAAATGTATATGTAAGACAGACAAAAATTA
ATCTGGTTGAGGATGATGGTCATGTCAAGAAACACCTTCAAGTAGGGGATGATGTAGTTG
GCGAGGAAGGGGCACGAGAAGAGGATGTTGATGCAGAGGAGCAAGAGTTGGCTGAAGATG
GAGAAGAAAGCGAAGATAACGAGGAATCACAAGATGGCGACGAGGAAGTAGACAATGAAG
AGGAGGACGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q05FH8
Definition sp|Q05FH8|RPOB_CARRP DNA-directed RNA polymerase subunit beta OS=Carsonella ruddii (strain PV)
Align length 68
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945213|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_J12, 5'
         (310 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05FH8|RPOB_CARRP DNA-directed RNA polymerase subunit beta OS...    31   2.2  
sp|Q74JN8|UVRC_LACJO UvrABC system protein C OS=Lactobacillus jo...    30   2.9  
sp|Q043W2|UVRC_LACGA UvrABC system protein C OS=Lactobacillus ga...    30   2.9  
sp|A5IK42|DNAK_THEP1 Chaperone protein dnaK OS=Thermotoga petrop...    30   3.8  
sp|Q9WYK6|DNAK_THEMA Chaperone protein dnaK OS=Thermotoga mariti...    30   3.8  
sp|Q9JIS7|CAC1F_MOUSE Voltage-dependent L-type calcium channel s...    29   6.4  
sp|Q1D9W6|CYSD_MYXXD Sulfate adenylyltransferase subunit 2 OS=My...    29   8.4  
sp|O60840|CAC1F_HUMAN Voltage-dependent L-type calcium channel s...    29   8.4  

>sp|Q05FH8|RPOB_CARRP DNA-directed RNA polymerase subunit beta
            OS=Carsonella ruddii (strain PV) GN=rpoB PE=3 SV=1
          Length = 1267

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -3

Query: 218  LCINILFSCPFLANYIIPYLKVFLDMTI---ILNQINFCLSYIYIYLLMQYNLNVSSFSI 48
            L I I+F C +  N  +      L + I   I NQ+N C+   Y + + + N  + +  I
Sbjct: 1072 LFIKIIFKCIYDKNINLNIFNNSLVLKIFKNIKNQLNVCVHNFYNFNVNKVNNIIKTIGI 1131

Query: 47   HSSCESLI 24
            + +CE L+
Sbjct: 1132 NKNCELLL 1139


>sp|Q74JN8|UVRC_LACJO UvrABC system protein C OS=Lactobacillus
           johnsonii GN=uvrC PE=3 SV=1
          Length = 600

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +3

Query: 54  EGGNIEV-----VLHEQVNVYVRQTKINLVEDDGHVKKHLQVGDDVVGEE 188
           +GG I+V     VL  ++NV +      +V+DD H   HL  GD   GEE
Sbjct: 460 DGGQIQVEACLDVLRNELNVNIPVA--GMVKDDHHRTNHLIFGDPTKGEE 507


>sp|Q043W2|UVRC_LACGA UvrABC system protein C OS=Lactobacillus
           gasseri (strain ATCC 33323 / DSM 20243) GN=uvrC PE=3
           SV=1
          Length = 600

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +3

Query: 54  EGGNIEV-----VLHEQVNVYVRQTKINLVEDDGHVKKHLQVGDDVVGEE 188
           +GG I+V     VL  ++NV +      +V+DD H   HL  GD   GEE
Sbjct: 460 DGGQIQVDACLDVLRNELNVNIPVA--GMVKDDHHRTNHLIFGDPTQGEE 507


>sp|A5IK42|DNAK_THEP1 Chaperone protein dnaK OS=Thermotoga
           petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
           GN=dnaK PE=2 SV=1
          Length = 596

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 12  VVADDQALTGAVDTEGGNIEVVLHEQVNVYVRQTKINLVEDDGHVKKHLQV 164
           V+ D   LT  ++ +GG  E ++     + VR++KI    +DG  +  ++V
Sbjct: 372 VLVDVTPLTLGIEVKGGLFEPIIPRNTKIPVRKSKIFTTVEDGQTEVEIRV 422


>sp|Q9WYK6|DNAK_THEMA Chaperone protein dnaK OS=Thermotoga maritima
           GN=dnaK PE=2 SV=1
          Length = 596

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 12  VVADDQALTGAVDTEGGNIEVVLHEQVNVYVRQTKINLVEDDGHVKKHLQV 164
           V+ D   LT  ++ +GG  E ++     + VR++KI    +DG  +  ++V
Sbjct: 372 VLVDVTPLTLGIEVKGGLFEPIIPRNTKIPVRKSKIFTTVEDGQTEVEIRV 422


>sp|Q9JIS7|CAC1F_MOUSE Voltage-dependent L-type calcium channel
            subunit alpha-1F OS=Mus musculus GN=Cacna1f PE=1 SV=1
          Length = 1985

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = -3

Query: 161  LKVFLDMTII---LNQINFCLSYIYIYLLMQYNLNVSSFSIHSSCESLI 24
            +++ L MT+    L++ +FC S+  +  L+  ++++ SF IHSS  S++
Sbjct: 922  VEILLKMTVFGAFLHRGSFCRSWFNLLDLLVVSVSLISFGIHSSAISVV 970


>sp|Q1D9W6|CYSD_MYXXD Sulfate adenylyltransferase subunit 2
           OS=Myxococcus xanthus (strain DK 1622) GN=cysD PE=3 SV=1
          Length = 305

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 33  LTGAVDTEGGNIEVVLHEQVNVYVRQTKINLVEDD 137
           L+GA+++    +E V+HE VN    + +  L++ D
Sbjct: 257 LSGAIESSATTVETVIHEMVNARQSERQGRLIDHD 291


>sp|O60840|CAC1F_HUMAN Voltage-dependent L-type calcium channel
            subunit alpha-1F OS=Homo sapiens GN=CACNA1F PE=1 SV=1
          Length = 1966

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = -3

Query: 161  LKVFLDMTII---LNQINFCLSYIYIYLLMQYNLNVSSFSIHSSCESLI 24
            +++ L MT+    L++ +FC S+  +  L+  ++++ SF IHSS  S++
Sbjct: 906  VEILLKMTVFGAFLHRGSFCRSWFNMLDLLVVSVSLISFGIHSSAISVV 954
tr_hit_id Q9G8P4
Definition tr|Q9G8P4|Q9G8P4_NAEGR ABC transporter subunit OS=Naegleria gruberi
Align length 65
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945213|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_J12, 5'
         (310 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9G8P4|Q9G8P4_NAEGR ABC transporter subunit OS=Naegleria grub...    35   1.4  
tr|B8F261|B8F261_BORGA Putative uncharacterized protein OS=Borre...    33   5.5  
tr|A0C7R0|A0C7R0_PARTE Chromosome undetermined scaffold_156, who...    33   7.2  
tr|Q0QB69|Q0QB69_9MUSC NADH-ubiquinone oxidoreductase chain 2 (F...    33   9.4  
tr|Q0QB27|Q0QB27_9MUSC NADH-ubiquinone oxidoreductase chain 2 (F...    33   9.4  

>tr|Q9G8P4|Q9G8P4_NAEGR ABC transporter subunit OS=Naegleria gruberi
           GN=yejU PE=4 SV=1
          Length = 210

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = -3

Query: 212 INILFSCPFLANYIIPYLKV-FLDMTIILNQINFCLSYIYIYLLMQYNLNVSSFSIHSSC 36
           I++ +   F+ NYI+ YL + F+ ++ IL  I F +   YIY +   N+N+SS  I SS 
Sbjct: 25  ISLDYYSKFIYNYIL-YLHISFIIISYILFFIIFIIYVSYIYSINIININISSIGIFSSF 83

Query: 35  ESLII 21
            +L I
Sbjct: 84  YTLFI 88


>tr|B8F261|B8F261_BORGA Putative uncharacterized protein OS=Borrelia
           garinii Far04 GN=BGAFAR04_C0003 PE=4 SV=1
          Length = 242

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -3

Query: 206 ILFSCPFLANYIIPYLKVFLD-MTIILNQINFCLSYIYIYLLMQYNLNVSSFSIHSSCES 30
           + FSC    NY I Y+  F+  +   ++ IN+ +SYI  Y +   N  +S  +   S  +
Sbjct: 2   LFFSCTLPFNYFISYINYFISYINYFISYINYFISYIN-YFISYINYFISYINYFISYIN 60

Query: 29  LIISY 15
             ISY
Sbjct: 61  YFISY 65


>tr|A0C7R0|A0C7R0_PARTE Chromosome undetermined scaffold_156, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00035958001 PE=4 SV=1
          Length = 220

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
 Frame = -3

Query: 227 LLLLCINILFSCPFLANYI-------IPYLKVFLDMTIILNQINFCLSYIYIYLLMQYNL 69
           +L  CINILF C + A+ I          L VF +++I+   +   LSY Y     Q+N+
Sbjct: 138 ILCFCINILFQCIYYASGITGAMRKSYKTLNVFGNLSILGMFLQIFLSYTY-----QFNI 192

Query: 68  NVSSFSIHSSCESLIISY 15
            V +F + S   +  +S+
Sbjct: 193 LVFAFRVLSCIYAKFLSH 210


>tr|Q0QB69|Q0QB69_9MUSC NADH-ubiquinone oxidoreductase chain 2
           (Fragment) OS=Drosophila cf. cheda BCW-2006 GN=ND2 PE=3
           SV=1
          Length = 341

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 188 FLANYIIPYLKVFLDMTIILNQINFCLSYIYIYLLMQYNLNVSSFSIHSSCESLIISYYS 9
           FL+   +P    FL   I++ Q+ FC SY  + +L+   L    F +     + +++YY 
Sbjct: 244 FLSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFSAFMLNYYE 303

Query: 8   PS 3
            S
Sbjct: 304 NS 305


>tr|Q0QB27|Q0QB27_9MUSC NADH-ubiquinone oxidoreductase chain 2
           (Fragment) OS=Drosophila bipatita GN=ND2 PE=3 SV=1
          Length = 341

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 188 FLANYIIPYLKVFLDMTIILNQINFCLSYIYIYLLMQYNLNVSSFSIHSSCESLIISYYS 9
           FL+   +P    FL   I++ Q+ FC SY  + +L+   L    F +     + +++YY 
Sbjct: 244 FLSLGGLPPFLGFLPKWIVIQQLTFCSSYFLLMILLMTTLITLFFYLRICFSAFMLNYYE 303

Query: 8   PS 3
            S
Sbjct: 304 NS 305