NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945226
Clone id YMU02A01NGRL0008_K03
Library
Length 294
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_K03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CAGACTTGCTGGCACATGCCGAGAAGGAAGGATATGATGTCTCTCAGGTGAGAAAGACAA
TTCAGGATGAAGCTGCTGACTCGAGTAATCTGGAAGTGGCAAAGAAGCTGTCAGATGATC
AGGGCACGTGGTGGCTGAAATCGGTGCTTGGCAAGTAAATGCTCTTTGTATGTGATGATA
TCCTGTATTTGTGCGGCCTCATGTTAAGTCATCCTGTTGATAGCTCATTGTATTTTGAAA
TTGAATTATAAATTTCCCGAAATTCATTTGAAGCGCGAAGCCCAAAAACCTTGT
■■Homology search results ■■ -
sp_hit_id Q9UHC6
Definition sp|Q9UHC6|CNTP2_HUMAN Contactin-associated protein-like 2 OS=Homo sapiens
Align length 62
Score (bit) 33.9
E-value 0.25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945226|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_K03, 5'
         (294 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UHC6|CNTP2_HUMAN Contactin-associated protein-like 2 OS=Hom...    34   0.25 
sp|Q5RD64|CNTP2_PONAB Contactin-associated protein-like 2 OS=Pon...    31   2.2  
sp|Q6UXY8|TMC5_HUMAN Transmembrane channel-like protein 5 OS=Hom...    30   2.9  
sp|P13991|TNSD_ECOLX Transposon Tn7 transposition protein tnsD O...    30   3.7  
sp|Q8T773|MDH1B_BRAFL Putative malate dehydrogenase 1B OS=Branch...    29   8.2  
sp|Q4JUJ8|ATPA_CORJK ATP synthase subunit alpha OS=Corynebacteri...    29   8.2  

>sp|Q9UHC6|CNTP2_HUMAN Contactin-associated protein-like 2 OS=Homo
            sapiens GN=CNTNAP2 PE=1 SV=1
          Length = 1331

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -3

Query: 259  REIYNSISKYNELSTG*LNMRPHKYRISSHTKSIYLPSTDF---SHHVP*SSDSFFATSR 89
            RE YN    +  ++ G    +PH   I+ H K+I+L    +   S+H+P SSD+ F + +
Sbjct: 1095 REPYNIDVDHRNMANG----QPHSVNITRHEKTIFLKLDHYPSVSYHLPSSSDTLFNSPK 1150

Query: 88   LL 83
             L
Sbjct: 1151 SL 1152


>sp|Q5RD64|CNTP2_PONAB Contactin-associated protein-like 2 OS=Pongo
            abelii GN=CNTNAP2 PE=2 SV=1
          Length = 1331

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -3

Query: 259  REIYNSISKYNELSTG*LNMRPHKYRISSHTKSIYLPSTDF---SHHVP*SSDSFFATSR 89
            RE YN  + +  ++ G    +PH    + H K+I L    +   S+H+P SSD+ F + +
Sbjct: 1095 REPYNIDTDHRNMANG----QPHSVNNTRHEKTIILKLDHYPSVSYHLPSSSDTLFNSPK 1150

Query: 88   LL 83
             L
Sbjct: 1151 SL 1152


>sp|Q6UXY8|TMC5_HUMAN Transmembrane channel-like protein 5 OS=Homo
           sapiens GN=TMC5 PE=2 SV=2
          Length = 1006

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -1

Query: 138 SATTCPDHLTASLPLPDYSSQQLHP 64
           ++ T PDH T SLP PDYS  Q HP
Sbjct: 94  ASRTSPDHPT-SLPEPDYSEFQSHP 117


>sp|P13991|TNSD_ECOLX Transposon Tn7 transposition protein tnsD
           OS=Escherichia coli GN=tnsD PE=4 SV=1
          Length = 508

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 45  QVRKTIQDEAADSSNLEVAKKLSDDQGTWWLKSVLGK 155
           +VR+T  DEA +  +L    KL++++ T WLKS+  K
Sbjct: 245 RVRQTFSDEALEKLDL----KLAENKDTCWLKSIFRK 277


>sp|Q8T773|MDH1B_BRAFL Putative malate dehydrogenase 1B
           OS=Branchiostoma floridae GN=MDH1B PE=3 SV=1
          Length = 522

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 57  TIQDEAADSSNLEVAKKLSDDQGTWWLKSVLGK*M-LFVCDDILYLC--GLMLSHPV 218
           TIQD    S++L +A  +S     WW  S  G+   L VC +  Y    G++ S PV
Sbjct: 368 TIQDSLQHSADLSMAAAISSTLSYWWNGSPEGQLFSLAVCSEGFYNIPEGVVFSFPV 424


>sp|Q4JUJ8|ATPA_CORJK ATP synthase subunit alpha OS=Corynebacterium
           jeikeium (strain K411) GN=atpA PE=3 SV=1
          Length = 545

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 24  KEGYDVSQVRKTIQDEAADSSNLEVAKKLSDDQGTWWLKSVLG 152
           ++G  ++ +RKT++D  A      VA   SD  G  WL    G
Sbjct: 211 QKGSTIASIRKTLEDHGALEYTTIVAAPASDSAGFKWLAPFTG 253
tr_hit_id Q6K623
Definition tr|Q6K623|Q6K623_ORYSJ Os02g0612900 protein OS=Oryza sativa subsp. japonica
Align length 50
Score (bit) 47.4
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945226|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_K03, 5'
         (294 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6K623|Q6K623_ORYSJ Os02g0612900 protein OS=Oryza sativa subs...    47   4e-04
tr|A2X753|A2X753_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|Q5J0W3|Q5J0W3_CAPAN Lipocalin protein OS=Capsicum annuum PE=2...    46   8e-04
tr|A9NQ51|A9NQ51_PICSI Putative uncharacterized protein OS=Picea...    46   0.001
tr|A9NP85|A9NP85_PICSI Putative uncharacterized protein OS=Picea...    46   0.001
tr|A9NKV7|A9NKV7_PICSI Putative uncharacterized protein OS=Picea...    46   0.001
tr|Q38JD0|Q38JD0_PINTA Temperature-induced lipocalin OS=Pinus ta...    45   0.001
tr|Q38JE2|Q38JE2_SORBI Temperature-induced lipocalin-2 OS=Sorghu...    45   0.002
tr|Q38JD4|Q38JD4_SOLLC Temperature-induced lipocalin OS=Solanum ...    44   0.003
tr|Q38JC7|Q38JC7_SOLTU Temperature-induced lipocalin OS=Solanum ...    44   0.003
tr|Q8S9H0|Q8S9H0_WHEAT Temperature stress-induced lipocalin OS=T...    44   0.004
tr|Q38JB1|Q38JB1_TORRU Temperature-induced lipocalin OS=Tortula ...    44   0.005
tr|Q38JE7|Q38JE7_MAIZE Temperature-induced lipocalin-1 (Putative...    43   0.007
tr|Q38JE6|Q38JE6_SORBI Temperature-induced lipocalin-1 OS=Sorghu...    43   0.007
tr|Q38JD3|Q38JD3_SACOF Temperature-induced lipocalin OS=Saccharu...    43   0.007
tr|Q38JD1|Q38JD1_PHYPA Temperature-induced lipocalin OS=Physcomi...    43   0.007
tr|Q38JC6|Q38JC6_BRANA Temperature-induced lipocalin OS=Brassica...    43   0.007
tr|A9U3E0|A9U3E0_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|Q38JE5|Q38JE5_WHEAT Temperature-induced lipocalin-2 OS=Tritic...    43   0.009
tr|Q9FGT8|Q9FGT8_ARATH Outer membrane lipoprotein-like OS=Arabid...    42   0.012
tr|Q8LE12|Q8LE12_ARATH Outer membrane lipoprotein-like OS=Arabid...    42   0.012
tr|Q38JE3|Q38JE3_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.012
tr|A8IXT9|A8IXT9_BRACM Temperature-induced lipocalin OS=Brassica...    42   0.015
tr|Q38JC8|Q38JC8_MEDTR Putative uncharacterized protein OS=Medic...    42   0.020
tr|Q38JD7|Q38JD7_MESCR Temperature-induced lipocalin' OS=Mesembr...    41   0.026
tr|Q38JD2|Q38JD2_SOYBN Temperature-induced lipocalin OS=Glycine ...    41   0.034
tr|Q6Z9F9|Q6Z9F9_ORYSJ Os08g0440100 protein OS=Oryza sativa subs...    40   0.044
tr|Q38JE8|Q38JE8_HORVU Temperature-induced lipocalin-1 OS=Hordeu...    40   0.044
tr|Q38JE4|Q38JE4_HORVU Temperature-induced lipocalin-2 OS=Hordeu...    40   0.044
tr|Q38JC3|Q38JC3_MESCR Temperature-induced lipocalin OS=Mesembry...    40   0.044

>tr|Q6K623|Q6K623_ORYSJ Os02g0612900 protein OS=Oryza sativa subsp.
           japonica GN=OJ1004_A05.35 PE=2 SV=1
          Length = 195

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 23/50 (46%), Positives = 32/50 (64%)
 Frame = +3

Query: 6   LLAHAEKEGYDVSQVRKTIQDEAADSSNLEVAKKLSDDQGTWWLKSVLGK 155
           LL  A++EGYDV ++RKT QD+    S+       +D +GTWW KS+ GK
Sbjct: 150 LLEKAKEEGYDVEKLRKTPQDDPPPESDAAP----TDTKGTWWFKSLFGK 195


>tr|A2X753|A2X753_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08047 PE=4 SV=1
          Length = 195

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 23/50 (46%), Positives = 32/50 (64%)
 Frame = +3

Query: 6   LLAHAEKEGYDVSQVRKTIQDEAADSSNLEVAKKLSDDQGTWWLKSVLGK 155
           LL  A++EGYDV ++RKT QD+    S+       +D +GTWW KS+ GK
Sbjct: 150 LLEKAKEEGYDVEKLRKTPQDDPPPESDAAP----TDTKGTWWFKSLFGK 195


>tr|Q5J0W3|Q5J0W3_CAPAN Lipocalin protein OS=Capsicum annuum PE=2
           SV=1
          Length = 184

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 22/50 (44%), Positives = 32/50 (64%)
 Frame = +3

Query: 6   LLAHAEKEGYDVSQVRKTIQDEAADSSNLEVAKKLSDDQGTWWLKSVLGK 155
           L+   + EGYDVS++RKT Q ++  S +        DD+G WW+KS+LGK
Sbjct: 140 LVEKGKAEGYDVSKLRKTPQSDSPPSEDGP-----KDDKGIWWIKSILGK 184


>tr|A9NQ51|A9NQ51_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 182

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = +3

Query: 6   LLAHAEKEGYDVSQVRKTIQDEAADSSNLEVAKKLSDDQGTWWLKSVLGK 155
           LL HA++EGYDV ++ KT Q+   D+   E  K    D+G WW+K+++GK
Sbjct: 140 LLEHAQQEGYDVKRLHKTTQN---DNPETEAPK----DKGFWWIKALIGK 182


>tr|A9NP85|A9NP85_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 182

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = +3

Query: 6   LLAHAEKEGYDVSQVRKTIQDEAADSSNLEVAKKLSDDQGTWWLKSVLGK 155
           LL HA++EGYDV ++ KT Q+   D+   E  K    D+G WW+K+++GK
Sbjct: 140 LLEHAQQEGYDVKRLHKTTQN---DNPETEAPK----DKGFWWIKALIGK 182


>tr|A9NKV7|A9NKV7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 182

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = +3

Query: 6   LLAHAEKEGYDVSQVRKTIQDEAADSSNLEVAKKLSDDQGTWWLKSVLGK 155
           LL HA++EGYDV ++ KT Q+   D+   E  K    D+G WW+K+++GK
Sbjct: 140 LLEHAQQEGYDVKRLHKTTQN---DNPETEAPK----DKGFWWIKALIGK 182


>tr|Q38JD0|Q38JD0_PINTA Temperature-induced lipocalin OS=Pinus taeda
           GN=TIL PE=2 SV=1
          Length = 182

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 23/50 (46%), Positives = 31/50 (62%)
 Frame = +3

Query: 6   LLAHAEKEGYDVSQVRKTIQDEAADSSNLEVAKKLSDDQGTWWLKSVLGK 155
           LL HA +EGYDV ++ KT Q+   D    E  K    D+G WW+K++LGK
Sbjct: 140 LLEHARQEGYDVGRLHKTTQN---DDPETEAPK----DKGFWWIKALLGK 182


>tr|Q38JE2|Q38JE2_SORBI Temperature-induced lipocalin-2 OS=Sorghum
           bicolor GN=TIL-2 PE=2 SV=1
          Length = 187

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/51 (39%), Positives = 32/51 (62%)
 Frame = +3

Query: 3   DLLAHAEKEGYDVSQVRKTIQDEAADSSNLEVAKKLSDDQGTWWLKSVLGK 155
           +L+  A++EGYDVS++RKT   +    S     ++   D+G WW+KS+ GK
Sbjct: 142 ELVERAKEEGYDVSKLRKTAHPDPPPES-----EQSPGDRGVWWIKSIFGK 187


>tr|Q38JD4|Q38JD4_SOLLC Temperature-induced lipocalin OS=Solanum
           lycopersicum GN=TIL PE=2 SV=1
          Length = 185

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +3

Query: 6   LLAHAEKEGYDVSQVRKTIQDEAADSSNLEVAKKLSDDQGTWWLKSVLGK 155
           L+  A++EGYDVS++ KT Q ++   S         D +G WW+KS+LGK
Sbjct: 140 LVEKAKEEGYDVSKLHKTPQSDSPPDSE----DSPKDTKGIWWIKSILGK 185


>tr|Q38JC7|Q38JC7_SOLTU Temperature-induced lipocalin OS=Solanum
           tuberosum GN=TIL PE=2 SV=1
          Length = 185

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +3

Query: 6   LLAHAEKEGYDVSQVRKTIQDEAADSSNLEVAKKLSDDQGTWWLKSVLGK 155
           L+  A++EGYDVS++ KT Q ++   S         D +G WW+KS+LGK
Sbjct: 140 LVEKAKEEGYDVSKLHKTPQSDSPPESE----DSPEDTKGIWWIKSILGK 185