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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945233
Clone id YMU02A01NGRL0008_K11
Library
Length 339
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_K11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TACCAAGAAGTATGGTGCTAATGTCGATGGATACAGCCCTATCTATGTCCCAGAGGAATG
GTCAGCTTCTGGTGATAGCTATGCTGCAGGTCCTACTGGATTGGCTATCTGGGCAGTTAC
CCTCGGCGCTATCTTGTTGGGTGGTGCCCTCTTAGTGTACAACACCAGTGCCCTTGCTCA
ATGATTGCTTTTGTATGTTAATGAGGTGAATCCTGAATTCTGACACACTATGCGTCTTCC
ATGTCTCACCTATTGCCTTGTATATTCTGACAGTCATGAGAATGAAAAAGTGTAGCTCCT
TGTGAATTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P49108
Definition sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris
Align length 58
Score (bit) 80.9
E-value 2.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945233|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_K11, 5'
         (310 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl...    81   2e-15
sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl...    80   3e-15
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl...    80   4e-15
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl...    80   4e-15
sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl...    78   1e-14
sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl...    78   1e-14
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl...    77   3e-14
sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewa...    31   1.7  
sp|Q6AXP3|CO033_RAT Uncharacterized protein C15orf33 homolog OS=...    29   8.3  

>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1
          Length = 141

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 40/58 (68%), Positives = 41/58 (70%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
           KYGANVDGYSPIY  +EWSASGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 84  KYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141


>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1
          Length = 140

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 40/58 (68%), Positives = 40/58 (68%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
           KYGANVDGYSPIY   EWSASGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 83  KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140


>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 39/58 (67%), Positives = 40/58 (68%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
           KYGANVDGYSPIY  +EWS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 81  KYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138


>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 39/58 (67%), Positives = 40/58 (68%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
           KYGANVDGYSPIY  +EWS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 81  KYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138


>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1
          Length = 140

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 38/58 (65%), Positives = 40/58 (68%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
           KYGANVDGYSPIY  EEW+ +GD YA G TGL IWAVT           VYNTSALAQ
Sbjct: 83  KYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140


>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1
          Length = 138

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 37/57 (64%), Positives = 39/57 (68%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
           KYGANVDGYSPIY PEEWS SGD Y  G TGL +WAVT           VY+TSALA
Sbjct: 81  KYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137


>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1
          Length = 136

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 37/58 (63%), Positives = 40/58 (68%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
           KYGANVDGYSPIY  ++WS SGD Y  G TGLAIWAVT           V+NTSALAQ
Sbjct: 79  KYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136


>sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC
           OS=Shewanella denitrificans (strain OS217 / ATCC
           BAA-1090 / DSM 15013) GN=thiC PE=3 SV=1
          Length = 686

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 305 SQGATLFHSHDCQNIQGNR*DMEDA*CVRI 216
           SQG+ L+HS D   I  N+ D +DA  VR+
Sbjct: 650 SQGSALYHSIDSSGINDNKNDQQDASVVRV 679


>sp|Q6AXP3|CO033_RAT Uncharacterized protein C15orf33 homolog
           OS=Rattus norvegicus PE=2 SV=2
          Length = 573

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -1

Query: 301 KELHFFILMTVRIYKAIGETWKTHSVSEFRIHLIN 197
           K+++ ++L T  + + + + WKTH +S+  I L++
Sbjct: 158 KQIYLYVLRTHNLEEKVFKVWKTHILSDCSIALLH 192
tr_hit_id Q6XW17
Definition tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=Triticum aestivum
Align length 57
Score (bit) 83.2
E-value 6.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945233|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_K11, 5'
         (310 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=...    83   6e-15
tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein...    82   1e-14
tr|Q84XP6|Q84XP6_BRARP Photosystem II 10kDa polypeptide (Fragmen...    81   3e-14
tr|A1YN01|A1YN01_BRACM Photosystem II 10kDa polytpeptide OS=Bras...    81   3e-14
tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subs...    80   4e-14
tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryz...    80   4e-14
tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragme...    80   4e-14
tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza...    80   4e-14
tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza...    80   4e-14
tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2...    80   4e-14
tr|Q0WWI7|Q0WWI7_ARATH PSII-R protein OS=Arabidopsis thaliana GN...    80   5e-14
tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edu...    80   5e-14
tr|A5AWT3|A5AWT3_VITVI Putative uncharacterized protein (Chromos...    80   7e-14
tr|Q6ZF71|Q6ZF71_ORYSJ Putative Photosystem II 10 kDa polypeptid...    79   9e-14
tr|Q6V7X5|Q6V7X5_TRIPR 10 kDa photosystem II polypeptide OS=Trif...    79   9e-14
tr|B8B7B0|B8B7B0_ORYSI Putative uncharacterized protein OS=Oryza...    79   9e-14
tr|A3BGK2|A3BGK2_ORYSJ Putative uncharacterized protein OS=Oryza...    79   9e-14
tr|Q1H8R2|Q1H8R2_CHERU Photosystem II 10 kDa polypeptide, chloro...    79   1e-13
tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide, chloro...    79   1e-13
tr|Q8GV53|Q8GV53_9LILI Photosystem II 10 kDa protein OS=Xerophyt...    79   1e-13
tr|A1YMZ6|A1YMZ6_BRACM Chloroplast photosystem II 10 kDa polypep...    79   1e-13
tr|Q8H4P7|Q8H4P7_ORYSJ Os07g0147500 protein OS=Oryza sativa subs...    78   2e-13
tr|B8B7A9|B8B7A9_ORYSI Putative uncharacterized protein OS=Oryza...    78   2e-13
tr|A8VIE2|A8VIE2_PROJU Chloroplast photosystem II PsbR OS=Prosop...    78   2e-13
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Popul...    77   3e-13
tr|A9PHU8|A9PHU8_POPTR Putative uncharacterized protein OS=Popul...    77   4e-13
tr|A9PJW8|A9PJW8_POPJC Putative uncharacterized protein OS=Popul...    76   7e-13
tr|A9PH94|A9PH94_POPTR Putative uncharacterized protein OS=Popul...    76   7e-13
tr|A9PAP8|A9PAP8_POPTR Putative uncharacterized protein OS=Popul...    76   7e-13
tr|Q2PXN6|Q2PXN6_ARAHY Chloroplast photosystem II 10 kDa protein...    76   1e-12

>tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment)
           OS=Triticum aestivum PE=2 SV=1
          Length = 99

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 40/57 (70%), Positives = 40/57 (70%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
           KYGANVDGYSPIY PEEWS SGD YA G TGL IWAVT           VYNTSALA
Sbjct: 42  KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTLAGLLGGGVLLVYNTSALA 98


>tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein
           OS=Agave tequilana PE=2 SV=1
          Length = 144

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 39/58 (67%), Positives = 40/58 (68%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
           KYGANVDGYSPIY PEEWS SGD Y  G TGL IWA+T           VYNTSALAQ
Sbjct: 87  KYGANVDGYSPIYSPEEWSPSGDVYVGGTTGLLIWAITLAGLLAGGALLVYNTSALAQ 144


>tr|Q84XP6|Q84XP6_BRARP Photosystem II 10kDa polypeptide (Fragment)
           OS=Brassica rapa subsp. pekinensis PE=2 SV=1
          Length = 137

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 40/58 (68%), Positives = 41/58 (70%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
           KYGANVDGYSPIY  +EWSASGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 80  KYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 137


>tr|A1YN01|A1YN01_BRACM Photosystem II 10kDa polytpeptide
           OS=Brassica campestris PE=2 SV=1
          Length = 140

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 40/58 (68%), Positives = 41/58 (70%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
           KYGANVDGYSPIY  +EWSASGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 83  KYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140


>tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subsp.
           japonica GN=P0556A11.19 PE=2 SV=1
          Length = 130

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 38/57 (66%), Positives = 40/57 (70%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
           KYGANVDGYSPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 73  KYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 129


>tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryza
           sativa PE=2 SV=1
          Length = 126

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 38/57 (66%), Positives = 40/57 (70%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
           KYGANVDGYSPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 69  KYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 125


>tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 128

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 38/57 (66%), Positives = 40/57 (70%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
           KYGANVDGYSPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 71  KYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 127


>tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025317 PE=4 SV=1
          Length = 704

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 38/57 (66%), Positives = 40/57 (70%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
           KYGANVDGYSPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 647 KYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 703


>tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_28175 PE=4 SV=1
          Length = 130

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 38/57 (66%), Positives = 40/57 (70%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
           KYGANVDGYSPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 73  KYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 129


>tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2
           SV=1
          Length = 141

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 40/58 (68%), Positives = 41/58 (70%)
 Frame = +2

Query: 8   KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
           +YGANVDGYSPIY  EEWSASGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 84  EYGANVDGYSPIYNEEEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141