DK945233
Clone id YMU02A01NGRL0008_K11
Library
Length 339
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_K11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
TACCAAGAAGTATGGTGCTAATGTCGATGGATACAGCCCTATCTATGTCCCAGAGGAATG
GTCAGCTTCTGGTGATAGCTATGCTGCAGGTCCTACTGGATTGGCTATCTGGGCAGTTAC
CCTCGGCGCTATCTTGTTGGGTGGTGCCCTCTTAGTGTACAACACCAGTGCCCTTGCTCA
ATGATTGCTTTTGTATGTTAATGAGGTGAATCCTGAATTCTGACACACTATGCGTCTTCC
ATGTCTCACCTATTGCCTTGTATATTCTGACAGTCATGAGAATGAAAAAGTGTAGCTCCT
TGTGAATTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P49108
Definition sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris
Align length 58
Score (bit) 80.9
E-value 2.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945233|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_K11, 5'
(310 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 81 2e-15
sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 80 3e-15
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 80 4e-15
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 80 4e-15
sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 78 1e-14
sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 78 1e-14
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 77 3e-14
sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewa... 31 1.7
sp|Q6AXP3|CO033_RAT Uncharacterized protein C15orf33 homolog OS=... 29 8.3

>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide,
chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1
Length = 141

Score = 80.9 bits (198), Expect = 2e-15
Identities = 40/58 (68%), Positives = 41/58 (70%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
KYGANVDGYSPIY +EWSASGD Y G TGLAIWAVT VYNTSALAQ
Sbjct: 84 KYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141


>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide,
chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1
Length = 140

Score = 80.1 bits (196), Expect = 3e-15
Identities = 40/58 (68%), Positives = 40/58 (68%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
KYGANVDGYSPIY EWSASGD Y G TGLAIWAVT VYNTSALAQ
Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140


>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide,
chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1
Length = 138

Score = 79.7 bits (195), Expect = 4e-15
Identities = 39/58 (67%), Positives = 40/58 (68%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALAQ
Sbjct: 81 KYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138


>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide,
chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1
Length = 138

Score = 79.7 bits (195), Expect = 4e-15
Identities = 39/58 (67%), Positives = 40/58 (68%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALAQ
Sbjct: 81 KYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138


>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide,
chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1
Length = 140

Score = 78.2 bits (191), Expect = 1e-14
Identities = 38/58 (65%), Positives = 40/58 (68%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
KYGANVDGYSPIY EEW+ +GD YA G TGL IWAVT VYNTSALAQ
Sbjct: 83 KYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140


>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide,
chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1
Length = 138

Score = 78.2 bits (191), Expect = 1e-14
Identities = 37/57 (64%), Positives = 39/57 (68%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
KYGANVDGYSPIY PEEWS SGD Y G TGL +WAVT VY+TSALA
Sbjct: 81 KYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137


>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide,
chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1
Length = 136

Score = 77.0 bits (188), Expect = 3e-14
Identities = 37/58 (63%), Positives = 40/58 (68%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
KYGANVDGYSPIY ++WS SGD Y G TGLAIWAVT V+NTSALAQ
Sbjct: 79 KYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136


>sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC
OS=Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013) GN=thiC PE=3 SV=1
Length = 686

Score = 31.2 bits (69), Expect = 1.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3

Query: 305 SQGATLFHSHDCQNIQGNR*DMEDA*CVRI 216
SQG+ L+HS D I N+ D +DA VR+
Sbjct: 650 SQGSALYHSIDSSGINDNKNDQQDASVVRV 679


>sp|Q6AXP3|CO033_RAT Uncharacterized protein C15orf33 homolog
OS=Rattus norvegicus PE=2 SV=2
Length = 573

Score = 28.9 bits (63), Expect = 8.3
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = -1

Query: 301 KELHFFILMTVRIYKAIGETWKTHSVSEFRIHLIN 197
K+++ ++L T + + + + WKTH +S+ I L++
Sbjct: 158 KQIYLYVLRTHNLEEKVFKVWKTHILSDCSIALLH 192


tr_hit_id Q6XW17
Definition tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=Triticum aestivum
Align length 57
Score (bit) 83.2
E-value 6.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945233|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_K11, 5'
(310 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=... 83 6e-15
tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein... 82 1e-14
tr|Q84XP6|Q84XP6_BRARP Photosystem II 10kDa polypeptide (Fragmen... 81 3e-14
tr|A1YN01|A1YN01_BRACM Photosystem II 10kDa polytpeptide OS=Bras... 81 3e-14
tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subs... 80 4e-14
tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryz... 80 4e-14
tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragme... 80 4e-14
tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza... 80 4e-14
tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza... 80 4e-14
tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2... 80 4e-14
tr|Q0WWI7|Q0WWI7_ARATH PSII-R protein OS=Arabidopsis thaliana GN... 80 5e-14
tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edu... 80 5e-14
tr|A5AWT3|A5AWT3_VITVI Putative uncharacterized protein (Chromos... 80 7e-14
tr|Q6ZF71|Q6ZF71_ORYSJ Putative Photosystem II 10 kDa polypeptid... 79 9e-14
tr|Q6V7X5|Q6V7X5_TRIPR 10 kDa photosystem II polypeptide OS=Trif... 79 9e-14
tr|B8B7B0|B8B7B0_ORYSI Putative uncharacterized protein OS=Oryza... 79 9e-14
tr|A3BGK2|A3BGK2_ORYSJ Putative uncharacterized protein OS=Oryza... 79 9e-14
tr|Q1H8R2|Q1H8R2_CHERU Photosystem II 10 kDa polypeptide, chloro... 79 1e-13
tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide, chloro... 79 1e-13
tr|Q8GV53|Q8GV53_9LILI Photosystem II 10 kDa protein OS=Xerophyt... 79 1e-13
tr|A1YMZ6|A1YMZ6_BRACM Chloroplast photosystem II 10 kDa polypep... 79 1e-13
tr|Q8H4P7|Q8H4P7_ORYSJ Os07g0147500 protein OS=Oryza sativa subs... 78 2e-13
tr|B8B7A9|B8B7A9_ORYSI Putative uncharacterized protein OS=Oryza... 78 2e-13
tr|A8VIE2|A8VIE2_PROJU Chloroplast photosystem II PsbR OS=Prosop... 78 2e-13
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Popul... 77 3e-13
tr|A9PHU8|A9PHU8_POPTR Putative uncharacterized protein OS=Popul... 77 4e-13
tr|A9PJW8|A9PJW8_POPJC Putative uncharacterized protein OS=Popul... 76 7e-13
tr|A9PH94|A9PH94_POPTR Putative uncharacterized protein OS=Popul... 76 7e-13
tr|A9PAP8|A9PAP8_POPTR Putative uncharacterized protein OS=Popul... 76 7e-13
tr|Q2PXN6|Q2PXN6_ARAHY Chloroplast photosystem II 10 kDa protein... 76 1e-12

>tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment)
OS=Triticum aestivum PE=2 SV=1
Length = 99

Score = 83.2 bits (204), Expect = 6e-15
Identities = 40/57 (70%), Positives = 40/57 (70%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
KYGANVDGYSPIY PEEWS SGD YA G TGL IWAVT VYNTSALA
Sbjct: 42 KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTLAGLLGGGVLLVYNTSALA 98


>tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein
OS=Agave tequilana PE=2 SV=1
Length = 144

Score = 82.0 bits (201), Expect = 1e-14
Identities = 39/58 (67%), Positives = 40/58 (68%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
KYGANVDGYSPIY PEEWS SGD Y G TGL IWA+T VYNTSALAQ
Sbjct: 87 KYGANVDGYSPIYSPEEWSPSGDVYVGGTTGLLIWAITLAGLLAGGALLVYNTSALAQ 144


>tr|Q84XP6|Q84XP6_BRARP Photosystem II 10kDa polypeptide (Fragment)
OS=Brassica rapa subsp. pekinensis PE=2 SV=1
Length = 137

Score = 80.9 bits (198), Expect = 3e-14
Identities = 40/58 (68%), Positives = 41/58 (70%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
KYGANVDGYSPIY +EWSASGD Y G TGLAIWAVT VYNTSALAQ
Sbjct: 80 KYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 137


>tr|A1YN01|A1YN01_BRACM Photosystem II 10kDa polytpeptide
OS=Brassica campestris PE=2 SV=1
Length = 140

Score = 80.9 bits (198), Expect = 3e-14
Identities = 40/58 (68%), Positives = 41/58 (70%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
KYGANVDGYSPIY +EWSASGD Y G TGLAIWAVT VYNTSALAQ
Sbjct: 83 KYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140


>tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subsp.
japonica GN=P0556A11.19 PE=2 SV=1
Length = 130

Score = 80.5 bits (197), Expect = 4e-14
Identities = 38/57 (66%), Positives = 40/57 (70%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
KYGANVDGYSPIY PEEWS +GD+Y G TGL IWAVT VYNTSALA
Sbjct: 73 KYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 129


>tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryza
sativa PE=2 SV=1
Length = 126

Score = 80.5 bits (197), Expect = 4e-14
Identities = 38/57 (66%), Positives = 40/57 (70%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
KYGANVDGYSPIY PEEWS +GD+Y G TGL IWAVT VYNTSALA
Sbjct: 69 KYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 125


>tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragment)
OS=Oryza sativa subsp. indica PE=2 SV=1
Length = 128

Score = 80.5 bits (197), Expect = 4e-14
Identities = 38/57 (66%), Positives = 40/57 (70%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
KYGANVDGYSPIY PEEWS +GD+Y G TGL IWAVT VYNTSALA
Sbjct: 71 KYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 127


>tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_025317 PE=4 SV=1
Length = 704

Score = 80.5 bits (197), Expect = 4e-14
Identities = 38/57 (66%), Positives = 40/57 (70%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
KYGANVDGYSPIY PEEWS +GD+Y G TGL IWAVT VYNTSALA
Sbjct: 647 KYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 703


>tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_28175 PE=4 SV=1
Length = 130

Score = 80.5 bits (197), Expect = 4e-14
Identities = 38/57 (66%), Positives = 40/57 (70%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 178
KYGANVDGYSPIY PEEWS +GD+Y G TGL IWAVT VYNTSALA
Sbjct: 73 KYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 129


>tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2
SV=1
Length = 141

Score = 80.5 bits (197), Expect = 4e-14
Identities = 40/58 (68%), Positives = 41/58 (70%)
Frame = +2

Query: 8 KYGANVDGYSPIYVPEEWSASGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 181
+YGANVDGYSPIY EEWSASGD Y G TGLAIWAVT VYNTSALAQ
Sbjct: 84 EYGANVDGYSPIYNEEEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141