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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945235
Clone id YMU02A01NGRL0008_K14
Library
Length 466
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_K14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTGAAAGTTCACCTTATAGAGCTAGTCAAGAAGCAGACTTGGCCTGTATATCTTGCAGA
GCGATTGGACAAGGAACAATTTAAACGGATTGCAAGAGTTGCGGTGCATTCATTGCTTGC
TGTATGTGACTCAAGCAATAACTCTCTGAGTTCATCCTGTCGTCATCTCGAGGACCATGG
TAAGGACCCTATAGTCAATTGCTGTATTAAGTGTCTTCAACAACATGTGGAAAATGCAGT
GAGGACTGCTAAGGACAAGATTGTACCACAATAGACTCTGATAATTCTTTAACGTTTGTG
AATGCTTTGATGTGAGAATTGTATGAATAGTCAATTGCTCTGCAAGGCGGGAAAGGTTTC
TCCATGCTTTTGATGAGCAGGAGTTTGTGAATTACGAGCATGCTGAAGGTCATTTACTTC
TGATGTTTGTTGCATCANAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A6H779
Definition sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus
Align length 98
Score (bit) 29.6
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945235|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_K14, 5'
         (438 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus G...    30   5.7  
sp|B1HQE6|RLMN_LYSSC Ribosomal RNA large subunit methyltransfera...    29   7.5  

>sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus
           GN=FBXL2 PE=2 SV=1
          Length = 423

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 22/98 (22%), Positives = 35/98 (35%)
 Frame = +2

Query: 59  ERLDKEQFKRIARVAVHSLLAVCDXXXXXXXXXCRHLEDHGKDPIVNCCIKCLQQHVENA 238
           E L+     +I +  V +L+  C          C  LED     I N C + +  ++++ 
Sbjct: 159 EYLNLSWCDQITKDGVEALVRGCRGLRALLLRGCTQLEDEALKHIQNYCHELVSLNLQSC 218

Query: 239 VRTAKDKIVPQ*TLIIL*RL*ML*CENCMNSQLLCKAG 352
            R   D +V               C  C   Q LC +G
Sbjct: 219 SRVTDDGVVQL-------------CRGCPRLQALCLSG 243


>sp|B1HQE6|RLMN_LYSSC Ribosomal RNA large subunit methyltransferase
           N OS=Lysinibacillus sphaericus (strain C3-41) GN=rlmN
           PE=3 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 362 EKPFPPCRAIDYSYNSHIKAFTNVKELSESI 270
           EKPF   +  D+ YN  +K F  +  LS+ +
Sbjct: 54  EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGL 84
tr_hit_id A9RAY8
Definition tr|A9RAY8|A9RAY8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 96
Score (bit) 45.4
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945235|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_K14, 5'
         (438 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RAY8|A9RAY8_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|B6U0S2|B6U0S2_MAIZE PHD-finger family protein OS=Zea mays PE=...    33   5.4  
tr|Q4T162|Q4T162_TETNG Chromosome 21 SCAF10714, whole genome sho...    33   9.2  

>tr|A9RAY8|A9RAY8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_63700 PE=4 SV=1
          Length = 708

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
 Frame = +2

Query: 2   LKVHLIELVKKQTWPVYLAERLDKEQFKRIARVAVHSLLAVC--------DXXXXXXXXX 157
           LK  L   VK +  P+Y    +DK Q  RIAR+A   LLA                    
Sbjct: 608 LKEQLAHYVKTELKPLYRLGHIDKRQHIRIARLATQELLAAFGIEHRGPETRAFGSFSTA 667

Query: 158 CRHLEDHGKDPIVNCCIKCLQQHVENAVRTAKDKIV 265
           C HL         NCC++C++ +V   V     K V
Sbjct: 668 CTHLSSSSSSVFPNCCMQCVKHNVSKVVGVLVKKTV 703


>tr|B6U0S2|B6U0S2_MAIZE PHD-finger family protein OS=Zea mays PE=2
           SV=1
          Length = 733

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
 Frame = +2

Query: 74  EQFKRIARVAVHSLLAVC------DXXXXXXXXXCRH---LEDHGKDPIVNCCIKCLQQH 226
           ++FK +AR A HS+LA C                C+H   ++      I + C +CL   
Sbjct: 653 DRFKEVARTATHSILAACRFEHSPSQSLALSRPVCKHSPKVKQLNSSAITDFCRECLHNF 712

Query: 227 VENAVRTA 250
           V+ AV  A
Sbjct: 713 VKEAVSLA 720


>tr|Q4T162|Q4T162_TETNG Chromosome 21 SCAF10714, whole genome
           shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00008985001 PE=4 SV=1
          Length = 364

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -3

Query: 346 LAEQLTIHTILTSKHSQTLKNYQSLLWYNLVLSSPHCIFHMLLKTLNTAIDYRVLTMVLE 167
           +A  L+ HT+ T+ H    K+Y    W    ++ P C+ H+   + ++A D   L  VLE
Sbjct: 68  MARVLSKHTLFTAIH----KHYSVEDWKKFAVTHPECLEHVAASSGSSAADLEKLCSVLE 123