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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945241
Clone id YMU02A01NGRL0008_K21
Library
Length 148
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_K21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
AAGTCCTGAAATACTGGGAGAGCTTACCTACTTACCAACTAACTTGCTAAAGTGGATCAC
CGAAACACCCAAAGGCATGATAGAATGAAACAACGAAACGACAGGAAAGAAAGATGGGAA
ATTGGGAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8NWP2
Definition sp|Q8NWP2|DING_STAAW Probable ATP-dependent helicase dinG homolog OS=Staphylococcus aureus (strain MW2)
Align length 31
Score (bit) 28.9
E-value 8.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945241|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_K21, 5'
         (126 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NWP2|DING_STAAW Probable ATP-dependent helicase dinG homolo...    29   8.4  
sp|Q6G9A7|DING_STAAS Probable ATP-dependent helicase dinG homolo...    29   8.4  
sp|Q6GGV4|DING_STAAR Probable ATP-dependent helicase dinG homolo...    29   8.4  
sp|Q7A5K4|DING_STAAN Probable ATP-dependent helicase dinG homolo...    29   8.4  
sp|Q99U34|DING_STAAM Probable ATP-dependent helicase dinG homolo...    29   8.4  
sp|Q5HFW8|DING_STAAC Probable ATP-dependent helicase dinG homolo...    29   8.4  
sp|Q2YY51|DING_STAAB Probable ATP-dependent helicase dinG homolo...    29   8.4  
sp|Q2FYH5|DING_STAA8 Probable ATP-dependent helicase dinG homolo...    29   8.4  
sp|Q2FGY5|DING_STAA3 Probable ATP-dependent helicase dinG homolo...    29   8.4  

>sp|Q8NWP2|DING_STAAW Probable ATP-dependent helicase dinG homolog
           OS=Staphylococcus aureus (strain MW2) GN=dinG PE=3 SV=1
          Length = 897

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  ELTYLPTNLLKWITETPKGMIE*NNETTGKK 112
           E+  L   LL WITETP G I+  N   G+K
Sbjct: 359 EVNILKMQLLIWITETPSGDIQELNLKGGQK 389


>sp|Q6G9A7|DING_STAAS Probable ATP-dependent helicase dinG homolog
           OS=Staphylococcus aureus (strain MSSA476) GN=dinG PE=3
           SV=1
          Length = 897

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  ELTYLPTNLLKWITETPKGMIE*NNETTGKK 112
           E+  L   LL WITETP G I+  N   G+K
Sbjct: 359 EVNILKMQLLIWITETPSGDIQELNLKGGQK 389


>sp|Q6GGV4|DING_STAAR Probable ATP-dependent helicase dinG homolog
           OS=Staphylococcus aureus (strain MRSA252) GN=dinG PE=3
           SV=1
          Length = 897

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  ELTYLPTNLLKWITETPKGMIE*NNETTGKK 112
           E+  L   LL WITETP G I+  N   G+K
Sbjct: 359 EVNILKMQLLIWITETPSGDIQELNLKGGQK 389


>sp|Q7A5K4|DING_STAAN Probable ATP-dependent helicase dinG homolog
           OS=Staphylococcus aureus (strain N315) GN=dinG PE=1 SV=1
          Length = 897

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  ELTYLPTNLLKWITETPKGMIE*NNETTGKK 112
           E+  L   LL WITETP G I+  N   G+K
Sbjct: 359 EVNILKMQLLIWITETPSGDIQELNLKGGQK 389


>sp|Q99U34|DING_STAAM Probable ATP-dependent helicase dinG homolog
           OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
           GN=dinG PE=3 SV=1
          Length = 897

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  ELTYLPTNLLKWITETPKGMIE*NNETTGKK 112
           E+  L   LL WITETP G I+  N   G+K
Sbjct: 359 EVNILKMQLLIWITETPSGDIQELNLKGGQK 389


>sp|Q5HFW8|DING_STAAC Probable ATP-dependent helicase dinG homolog
           OS=Staphylococcus aureus (strain COL) GN=dinG PE=3 SV=1
          Length = 897

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  ELTYLPTNLLKWITETPKGMIE*NNETTGKK 112
           E+  L   LL WITETP G I+  N   G+K
Sbjct: 359 EVNILKMQLLIWITETPSGDIQELNLKGGQK 389


>sp|Q2YY51|DING_STAAB Probable ATP-dependent helicase dinG homolog
           OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
           GN=dinG PE=3 SV=1
          Length = 897

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  ELTYLPTNLLKWITETPKGMIE*NNETTGKK 112
           E+  L   LL WITETP G I+  N   G+K
Sbjct: 359 EVNILKMQLLIWITETPSGDIQELNLKGGQK 389


>sp|Q2FYH5|DING_STAA8 Probable ATP-dependent helicase dinG homolog
           OS=Staphylococcus aureus (strain NCTC 8325) GN=dinG PE=2
           SV=1
          Length = 897

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  ELTYLPTNLLKWITETPKGMIE*NNETTGKK 112
           E+  L   LL WITETP G I+  N   G+K
Sbjct: 359 EVNILKMQLLIWITETPSGDIQELNLKGGQK 389


>sp|Q2FGY5|DING_STAA3 Probable ATP-dependent helicase dinG homolog
           OS=Staphylococcus aureus (strain USA300) GN=dinG PE=3
           SV=1
          Length = 897

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  ELTYLPTNLLKWITETPKGMIE*NNETTGKK 112
           E+  L   LL WITETP G I+  N   G+K
Sbjct: 359 EVNILKMQLLIWITETPSGDIQELNLKGGQK 389
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945241|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_K21, 5'
         (126 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******