DK945257
Clone id YMU02A01NGRL0008_L16
Library
Length 154
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_L16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GGGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGATG
GTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGC
ACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q3SYW2
Definition sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus
Align length 39
Score (bit) 29.6
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945257|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_L16, 5'
(124 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1 30 4.9

>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
Length = 750

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +3

Query: 3 ESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 107
E ++GF L G AV C P DG++ V + AS NP
Sbjct: 116 ECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


tr_hit_id A7R8H6
Definition tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole genome shotgun sequence (Fragment) OS=Vitis vinifera
Align length 40
Score (bit) 48.1
E-value 0.0002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945257|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_L16, 5'
(124 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh... 48 2e-04
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who... 47 5e-04
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ... 46 8e-04
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 46 8e-04
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 46 8e-04
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 46 8e-04
tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1 33 5.4

>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
genome shotgun sequence (Fragment) OS=Vitis vinifera
GN=GSVIVT00011927001 PE=4 SV=1
Length = 60

Score = 48.1 bits (113), Expect = 2e-04
Identities = 24/40 (60%), Positives = 28/40 (70%)
Frame = +3

Query: 3 ESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGH 122
ES++ LL EA ECCT DG+SPVA S S S+ SSMGH
Sbjct: 13 ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGH 52


>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00010999001 PE=4 SV=1
Length = 73

Score = 47.0 bits (110), Expect = 5e-04
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = +3

Query: 3 ESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGH 122
ES++ LL EA ECCT DG+SPVA S S S+ +SMGH
Sbjct: 13 ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGH 52


>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 79

Score = 46.2 bits (108), Expect = 8e-04
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3

Query: 39 VECCTPDGDSPVAGSTASSRSNPSSMGH 122
+ECCT DG+SPVA S S RS+PSSMGH
Sbjct: 23 IECCTLDGESPVAESITSLRSDPSSMGH 50


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 87

Score = 46.2 bits (108), Expect = 8e-04
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3

Query: 39 VECCTPDGDSPVAGSTASSRSNPSSMGH 122
+ECCT DG+SPVA S S RS+PSSMGH
Sbjct: 29 IECCTLDGESPVAESITSLRSDPSSMGH 56


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 90

Score = 46.2 bits (108), Expect = 8e-04
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3

Query: 39 VECCTPDGDSPVAGSTASSRSNPSSMGH 122
+ECCT DG+SPVA S S RS+PSSMGH
Sbjct: 32 IECCTLDGESPVAESITSLRSDPSSMGH 59


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 85

Score = 46.2 bits (108), Expect = 8e-04
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3

Query: 39 VECCTPDGDSPVAGSTASSRSNPSSMGH 122
+ECCT DG+SPVA S S RS+PSSMGH
Sbjct: 27 IECCTLDGESPVAESITSLRSDPSSMGH 54


>tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1
Length = 124

Score = 33.5 bits (75), Expect = 5.4
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -1

Query: 115 MLLGLERELAVLPATGLSPSGVQ 47
MLLGLER+ +L ATGLSPS VQ
Sbjct: 1 MLLGLERKPMMLSATGLSPSRVQ 23