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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945259
Clone id YMU02A01NGRL0008_L19
Library
Length 245
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_L19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TGTTCAGCCTTCTGATACTGACCTTGGCTCTAAAGCCCCCAAAGATGTCAAGATTCAGGG
TATTTGGTATGCGCAAGTAGAGTAGACGGAGAAAACTTGGGGTCTTTCCTTTCGCAAGGC
CCTGGCTTGACCCTGTCCTTGTTTCTATATTGTTATGTAAAGCAAAGTTCTGAAAAAAGG
TGCCTGTTCATTAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id O49079
Definition sp|O49079|PSBO_FRIAG Oxygen-evolving enhancer protein 1, chloroplastic OS=Fritillaria agrestis
Align length 27
Score (bit) 57.8
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945259|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_L19, 5'
         (192 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O49079|PSBO_FRIAG Oxygen-evolving enhancer protein 1, chlorop...    58   2e-08
sp|P14226|PSBO_PEA Oxygen-evolving enhancer protein 1, chloropla...    56   5e-08
sp|Q40459|PSBO_TOBAC Oxygen-evolving enhancer protein 1, chlorop...    55   1e-07
sp|P26320|PSBO_SOLTU Oxygen-evolving enhancer protein 1, chlorop...    55   1e-07
sp|P23322|PSBO_SOLLC Oxygen-evolving enhancer protein 1, chlorop...    55   1e-07
sp|Q9S841|PSBO2_ARATH Oxygen-evolving enhancer protein 1-2, chlo...    53   4e-07
sp|P12359|PSBO_SPIOL Oxygen-evolving enhancer protein 1, chlorop...    53   5e-07
sp|P23321|PSBO1_ARATH Oxygen-evolving enhancer protein 1-1, chlo...    52   7e-07
sp|P46483|PSBO_EUGGR Oxygen-evolving enhancer protein 1, chlorop...    49   6e-06
sp|P12853|PSBO_CHLRE Oxygen-evolving enhancer protein 1, chlorop...    49   6e-06
sp|Q9SBN6|PSBO_VOLCA Oxygen-evolving enhancer protein 1, chlorop...    48   2e-05
sp|P27665|PSBO_WHEAT Oxygen-evolving enhancer protein 1, chlorop...    47   2e-05
sp|P13907|PSBO_ANASP Photosystem II manganese-stabilizing polype...    44   3e-04
sp|P10549|PSBO_SYNY3 Photosystem II manganese-stabilizing polype...    42   0.001
sp|Q9R6W6|PSBO_CYAA5 Photosystem II manganese-stabilizing polype...    42   0.001
sp|P11472|PSBO_SYNE7 Photosystem II manganese-stabilizing polype...    35   0.091
sp|P0A431|PSBO_THEEB Photosystem II manganese-stabilizing polype...    35   0.12 
sp|P0A432|PSBO_SYNEN Photosystem II manganese-stabilizing polype...    35   0.12 

>sp|O49079|PSBO_FRIAG Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Fritillaria agrestis GN=PSBO PE=2 SV=1
          Length = 329

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLGSKAPKDVKIQGIWYAQ+E
Sbjct: 303 IQPSDTDLGSKAPKDVKIQGIWYAQLE 329


>sp|P14226|PSBO_PEA Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Pisum sativum GN=PSBO PE=2 SV=1
          Length = 329

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 23/27 (85%), Positives = 27/27 (100%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLG+KAPKDVKIQG+WYAQ+E
Sbjct: 302 IQPSDTDLGAKAPKDVKIQGVWYAQLE 328


>sp|Q40459|PSBO_TOBAC Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1
          Length = 332

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLG+K PKDVKIQGIWYAQ+E
Sbjct: 306 IQPSDTDLGAKVPKDVKIQGIWYAQLE 332


>sp|P26320|PSBO_SOLTU Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Solanum tuberosum GN=PSBO PE=2 SV=1
          Length = 333

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLG+K PKDVKIQGIWYAQ+E
Sbjct: 306 IQPSDTDLGAKTPKDVKIQGIWYAQLE 332


>sp|P23322|PSBO_SOLLC Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Solanum lycopersicum GN=PSBO PE=2 SV=2
          Length = 329

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLG+K PKDVKIQGIWYAQ+E
Sbjct: 303 IQPSDTDLGAKVPKDVKIQGIWYAQLE 329


>sp|Q9S841|PSBO2_ARATH Oxygen-evolving enhancer protein 1-2,
           chloroplastic OS=Arabidopsis thaliana GN=PSBO2 PE=1 SV=1
          Length = 331

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLG+K PKDVKIQG+WY Q+E
Sbjct: 305 LQPSDTDLGAKVPKDVKIQGVWYGQIE 331


>sp|P12359|PSBO_SPIOL Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Spinacia oleracea GN=PSBO PE=1 SV=1
          Length = 332

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 21/27 (77%), Positives = 26/27 (96%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLG+K PKDVKI+G+WYAQ+E
Sbjct: 304 LQPSDTDLGAKVPKDVKIEGVWYAQLE 330


>sp|P23321|PSBO1_ARATH Oxygen-evolving enhancer protein 1-1,
           chloroplastic OS=Arabidopsis thaliana GN=PSBO1 PE=1 SV=2
          Length = 332

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLG+K PKDVKIQG+WY Q+E
Sbjct: 306 LQPSDTDLGAKVPKDVKIQGVWYGQLE 332


>sp|P46483|PSBO_EUGGR Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2
          Length = 338

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQV 79
           +QPSDTDLG+K PKD+K  G+WYAQ+
Sbjct: 309 IQPSDTDLGAKVPKDIKTSGVWYAQI 334


>sp|P12853|PSBO_CHLRE Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2
           SV=1
          Length = 291

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLG+K PKD+K+ G+WYAQ++
Sbjct: 265 IQPSDTDLGAKPPKDIKVTGLWYAQLK 291
tr_hit_id A9NV80
Definition tr|A9NV80|A9NV80_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 27
Score (bit) 57.8
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945259|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_L19, 5'
         (192 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NV80|A9NV80_PICSI Putative uncharacterized protein OS=Picea...    58   3e-07
tr|A9NRV4|A9NRV4_PICSI Putative uncharacterized protein OS=Picea...    58   3e-07
tr|B6T3B2|B6T3B2_MAIZE Oxygen-evolving enhancer protein 1 OS=Zea...    57   6e-07
tr|B4FRF2|B4FRF2_MAIZE Putative uncharacterized protein OS=Zea m...    57   6e-07
tr|B4F9R9|B4F9R9_MAIZE Oxygen-evolving enhancer protein 1 OS=Zea...    57   6e-07
tr|A5JV93|A5JV93_9POAL Chloroplast oxygen-evolving enhancer prot...    57   6e-07
tr|B7FHI9|B7FHI9_MEDTR Putative uncharacterized protein OS=Medic...    56   8e-07
tr|Q943W1|Q943W1_ORYSJ cDNA clone:001-013-B04, full insert seque...    55   2e-06
tr|Q84QE8|Q84QE8_TOBAC Oxygen evolving complex 33 kDa photosyste...    55   2e-06
tr|Q58H58|Q58H58_NICBE Chloroplast photosynthetic oxygen-evolvin...    55   2e-06
tr|B8A8L8|B8A8L8_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A6N1L3|A6N1L3_ORYSI Oxygen-evolving enhancer protein 1 (Fragm...    55   2e-06
tr|A6N1E2|A6N1E2_ORYSI Oxygen-evolving enhancer protein 1 (Fragm...    55   2e-06
tr|A6N109|A6N109_ORYSI Oxygen-evolving enhancer protein 1 (Fragm...    55   2e-06
tr|A7NTK5|A7NTK5_VITVI Chromosome chr18 scaffold_1, whole genome...    55   2e-06
tr|A5BPG1|A5BPG1_VITVI Putative uncharacterized protein OS=Vitis...    55   2e-06
tr|A9PK45|A9PK45_POPJC Putative uncharacterized protein OS=Popul...    54   3e-06
tr|A9PJ90|A9PJ90_POPJC Putative uncharacterized protein OS=Popul...    54   3e-06
tr|A9PHI5|A9PHI5_POPTR Putative uncharacterized protein OS=Popul...    54   3e-06
tr|A9PGS6|A9PGS6_POPTR Putative uncharacterized protein OS=Popul...    54   3e-06
tr|Q9LRC4|Q9LRC4_9ROSI Oxygen evolving enhancer protein 1 OS=Bru...    53   7e-06
tr|Q6RUN4|Q6RUN4_TOBAC ERT12 (Fragment) OS=Nicotiana tabacum GN=...    53   7e-06
tr|B5BT06|B5BT06_SALEU 33 kDa protein of the oxygen-evolving com...    53   7e-06
tr|B0L803|B0L803_9CARY 33 kDa OEC protein (Fragment) OS=Salicorn...    53   7e-06
tr|A9PHA9|A9PHA9_POPTR Putative uncharacterized protein OS=Popul...    53   7e-06
tr|Q7XYP5|Q7XYP5_BIGNA Photosystem II protein PsbO OS=Bigelowiel...    53   9e-06
tr|Q6DV58|Q6DV58_BRAOL Photosystem II protein OS=Brassica olerac...    52   1e-05
tr|B5A4J2|B5A4J2_GYMST Photosystem II oxygen evolving enhancer p...    52   1e-05
tr|A9U1K9|A9U1K9_PHYPA Predicted protein OS=Physcomitrella paten...    52   1e-05
tr|A9CMA1|A9CMA1_9VIRI 33kDa oxygen evolving protein of photosys...    52   1e-05

>tr|A9NV80|A9NV80_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 341

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLGSKAPKDVKIQGIWYAQ+E
Sbjct: 313 LQPSDTDLGSKAPKDVKIQGIWYAQIE 339


>tr|A9NRV4|A9NRV4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 341

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLGSKAPKDVKIQGIWYAQ+E
Sbjct: 313 LQPSDTDLGSKAPKDVKIQGIWYAQIE 339


>tr|B6T3B2|B6T3B2_MAIZE Oxygen-evolving enhancer protein 1 OS=Zea
           mays PE=2 SV=1
          Length = 329

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           VQPSDTDLG+KAPKDVKIQG+WYAQ+E
Sbjct: 303 VQPSDTDLGAKAPKDVKIQGVWYAQLE 329


>tr|B4FRF2|B4FRF2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 230

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           VQPSDTDLG+KAPKDVKIQG+WYAQ+E
Sbjct: 204 VQPSDTDLGAKAPKDVKIQGVWYAQLE 230


>tr|B4F9R9|B4F9R9_MAIZE Oxygen-evolving enhancer protein 1 OS=Zea
           mays PE=2 SV=1
          Length = 335

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           VQPSDTDLG+KAPKDVKIQG+WYAQ+E
Sbjct: 309 VQPSDTDLGAKAPKDVKIQGVWYAQLE 335


>tr|A5JV93|A5JV93_9POAL Chloroplast oxygen-evolving enhancer protein
           1 OS=Leymus chinensis GN=OEE1 PE=2 SV=1
          Length = 328

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           VQPSDTDLG+KAPKDVKIQG+WYAQ+E
Sbjct: 300 VQPSDTDLGAKAPKDVKIQGVWYAQLE 326


>tr|B7FHI9|B7FHI9_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 170

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 23/27 (85%), Positives = 27/27 (100%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLG+KAPKDVKIQG+WYAQ+E
Sbjct: 143 IQPSDTDLGAKAPKDVKIQGVWYAQLE 169


>tr|Q943W1|Q943W1_ORYSJ cDNA clone:001-013-B04, full insert sequence
           OS=Oryza sativa subsp. japonica GN=B1080D07.27 PE=1 SV=1
          Length = 333

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           VQPSDTDLG+K PKDVKIQG+WYAQ+E
Sbjct: 307 VQPSDTDLGAKVPKDVKIQGVWYAQLE 333


>tr|Q84QE8|Q84QE8_TOBAC Oxygen evolving complex 33 kDa photosystem
           II protein OS=Nicotiana tabacum GN=PsbO PE=2 SV=1
          Length = 332

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLG+K PKDVKIQGIWYAQ+E
Sbjct: 306 IQPSDTDLGAKVPKDVKIQGIWYAQLE 332


>tr|Q58H58|Q58H58_NICBE Chloroplast photosynthetic oxygen-evolving
           protein 33 kDa subunit OS=Nicotiana benthamiana GN=psbO
           PE=2 SV=1
          Length = 332

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +2

Query: 2   VQPSDTDLGSKAPKDVKIQGIWYAQVE 82
           +QPSDTDLG+K PKDVKIQGIWYAQ+E
Sbjct: 306 IQPSDTDLGAKVPKDVKIQGIWYAQLE 332