DK945260
Clone id YMU02A01NGRL0008_L20
Library
Length 361
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_L20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GATGCCGCAGGCGGGCTTCTCAAGGTCGTTGAAGGCGATCGTGCAGGCTGAGGTTATGAG
CACTGATTGTGTTGCTCTTCGTGGTTCAGTACACGTGCTGAATGGAGCACGAGACATGTA
ATTTCCATGTACTTATTGTAGCCTATATGACAGGCCAGAAAGGGCAGAAAAATGCTTTGT
AATAGGTTCTTGTTTCGGGTGGTTATCATTATATTGTGTCATGGCAGCAAGTATGAGGAT
TTGTTTTGATGTATGAGCTTTTGAGCTACATTATCTAGTGGAAGATTCTTTGTCTGTCCT
GCTTTGTACAAGCTTTTGAGCTACATTATCTAGTGGAAGATTCTCTCTCTGTTTTGCCTT
A
■■Homology search results ■■ -
sp_hit_id Q6IR37
Definition sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=Mus musculus
Align length 26
Score (bit) 32.3
E-value 0.76
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945260|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_L20, 5'
(361 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=M... 32 0.76
sp|A4VGD9|TATB_PSEU5 Sec-independent protein translocase protein... 31 1.7
sp|Q6T4R5|NHS_HUMAN Nance-Horan syndrome protein OS=Homo sapiens... 29 6.5

>sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=Mus
musculus GN=Zdhhc24 PE=2 SV=2
Length = 284

Score = 32.3 bits (72), Expect = 0.76
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3

Query: 158 LACHIGYNKYMEITCLVLHSARVLNH 81
L C +G++ Y CL+LHSA VL H
Sbjct: 127 LGCCVGFHNYRPFLCLLLHSAGVLLH 152


>sp|A4VGD9|TATB_PSEU5 Sec-independent protein translocase protein
tatB homolog OS=Pseudomonas stutzeri (strain A1501)
GN=tatB PE=3 SV=1
Length = 139

Score = 31.2 bits (69), Expect = 1.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3

Query: 107 LHSARVLNHEEQHNQCS*PQPARSPSTTLRSPPA 6
LH+ R+L+ E + Q P PA +P+ T SPP+
Sbjct: 63 LHNERILDLEREMKQSIMPPPASNPAATPPSPPS 96


>sp|Q6T4R5|NHS_HUMAN Nance-Horan syndrome protein OS=Homo sapiens
GN=NHS PE=1 SV=1
Length = 1630

Score = 29.3 bits (64), Expect = 6.5
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Frame = -3

Query: 299 GQTKNLPLDNVAQKLIHQNKSSYLLP*HNIMITTRNK-----NLLQSIFLPFLACHIGYN 135
GQ P+ N+ L Q S LP + T K ++ S +P +G++
Sbjct: 298 GQRPKNPIHNIPSTLDKQTNWSKALP----LPTPEEKMKQDAQVISSCIIPINVTGVGFD 353

Query: 134 KYMEITCLVLHSARVLNHEEQ 72
+ I C ++HS VL +
Sbjct: 354 REASIRCSLVHSQSVLQRRRK 374


tr_hit_id B6PLH6
Definition tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 60
Score (bit) 36.2
E-value 0.85
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945260|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_L20, 5'
(361 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein OS=Branc... 36 0.85
tr|A2BEM9|A2BEM9_DANRE Novel protein containing a DHHC zinc fing... 33 9.3
tr|B8P5Z3|B8P5Z3_9APHY Predicted protein OS=Postia placenta Mad-... 33 9.3

>tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_108391 PE=4 SV=1
Length = 1131

Score = 36.2 bits (82), Expect = 0.85
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = -2

Query: 267 SSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALSGLSYRLQ*VHGNYMSRAPFSTCT 88
S ++ +Q+ ++A + QY+ HP+ P+ + F LS L NY SRAP T T
Sbjct: 91 SFRSFRLEQVRLVACVCQYSSEHPQALPMDQLFQGLSQLPKTETTDISNYFSRAPEETTT 150


>tr|A2BEM9|A2BEM9_DANRE Novel protein containing a DHHC zinc finger
domain (Fragment) OS=Danio rerio GN=CH211-137I24.2-001
PE=4 SV=1
Length = 362

Score = 32.7 bits (73), Expect = 9.3
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2

Query: 77 LRGSVHVLNGARDM*FPCTYCSLYDRPERAEKCFVIGSCFGWLSLYCV 220
LR V L G +D+ C C L RP RA C + G+C + +CV
Sbjct: 169 LRNGVSHLKGEKDVKKKCPVCQLV-RPPRAGHCRICGACVLRMDHHCV 215


>tr|B8P5Z3|B8P5Z3_9APHY Predicted protein OS=Postia placenta
Mad-698-R GN=POSPLDRAFT_95687 PE=4 SV=1
Length = 785

Score = 32.7 bits (73), Expect = 9.3
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = -2

Query: 183 ITKHFSALSGLSYRLQ*VHGNYMSRAPFSTCTEPRRATQSVLITSACTIAFNDLEKPACG 4
I++H S L + Q ++ Y++R+P ST EP TQSV +++FN A G
Sbjct: 383 ISQHVSTLRQRDQQQQALYQQYLNRSP-STPPEPSYGTQSVAAVLGGSMSFNSSMNSASG 441

Query: 3 I 1
+
Sbjct: 442 L 442