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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945269
Clone id YMU02A01NGRL0008_M11
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_M11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
AAGAAAATGCTCTTAGATTTGTTACAGAATGACAGTGAGGTGGAACTTGTGTATATCAAG
CCCAACTTCAAAGCACGCTATGGCTATGCACTAGATAACAAAGTTTTGGGGCATCCTTCT
CTCTTGTCCCTCCTATCCTCACTGGAGGATGTCACCGTCATTGGAAGACATGATAAGAAG
GTTGTTTTGCGCTCATCTGAGTGTGCAAGTGACAAACGAGAGGTAAAAGAGGAAGTAACC
CATGGCACAAATTCTGTCAGGGACATGACCGTGACTAGTGGGTCATTTTCCTGAATGTCA
TAGCAGAGCAATTCTCAACCTTGCCAATGTATCGATTACCCAGCCAAGCTAGCTATAATG
TAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTTTCTGCT
AACAGTCGATTCTTGTTGTTGCAGCGCTTGTCAATTTTAGAGTTTTTGCATGGGCAAACA
AAAAAGGATGCTTGAGGTTGCTTGCCGCCTGGGGAGTTTCATCGATGAATTGTAAAAAAG
■■Homology search results ■■ -
sp_hit_id Q9LSL9
Definition sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana
Align length 29
Score (bit) 29.6
E-value 9.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945269|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_M11, 5'
         (540 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protei...    30   9.8  
sp|P19620|ANXA2_PIG Annexin A2 OS=Sus scrofa GN=ANXA2 PE=1 SV=4        30   9.9  

>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein
           At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
          Length = 915

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 116 LLSCPSYPHWRMSPSLEDMIRRLFCAHLS 202
           LLS  S P+W  SPSL+ M+  +  +H+S
Sbjct: 66  LLSILSKPNWHKSPSLKSMVSAISPSHVS 94


>sp|P19620|ANXA2_PIG Annexin A2 OS=Sus scrofa GN=ANXA2 PE=1 SV=4
          Length = 339

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = +1

Query: 4   KMLLDLLQNDSEVELVYIKPNFKARYGYALDNKV 105
           K+L+ ++ + SEV+++ I+  FK +YG +L N +
Sbjct: 286 KVLIXIMVSRSEVDMLKIRSEFKRKYGKSLYNYI 319
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945269|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_M11, 5'
         (540 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******