DK945273 |
Clone id |
YMU02A01NGRL0008_M16 |
Library |
YMU02 |
Length |
409 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_M16. 5' end sequence. |
Accession |
DK945273 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL66Contig1 |
Sequence |
AGCTGATGGACTGCCACACCTCATTGTCGATGGAGATCAAGCGCACCTTGGCGAGTTCGT ATACCCAGGTATCCTCTTCTTGTACATTGCTGGTTGGATCGGATGGGTAGGCCGATCCTA TCTCATTGCTATCAAGGATTCCAAGAAGCCTGCAGAGAAAGAGATCATCATCGATGTTCC TCTGGCCTCCCGTCTTGCATGGCGTGGTTTTATCTGGCCTCTTGCGGCCATCTCAGAGCT GAGAAATGGCAAGCTTATTGAGGATGCGGCCAACATCACTGTCTCCCCTCGATGAATGGT GGCCTTGCCTTGTGTATTTTGAGTATTGCCGGGCCTTAAGCCTCTGTTGAATCTTGTTTT TAAAAATGTAACTTGTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P12355 |
Definition |
sp|P12355|PSAF_SPIOL Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea |
Align length |
88 |
Score (bit) |
143.0 |
E-value |
2.0e-34 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945273|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0008_M16, 5' (380 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P12355|PSAF_SPIOL Photosystem I reaction center subunit III, ... 143 2e-34 sp|P46486|PSAF_FLATR Photosystem I reaction center subunit III, ... 141 9e-34 sp|Q9SHE8|PSAF_ARATH Photosystem I reaction center subunit III, ... 141 1e-33 sp|P13192|PSAF_HORVU Photosystem I reaction center subunit III, ... 137 1e-32 sp|P31083|PSAF_SYNP6 Photosystem I reaction center subunit III O... 132 4e-31 sp|Q6B948|PSAF_GRATL Photosystem I reaction center subunit III O... 129 4e-30 sp|Q1XDU4|PSAF_PORYE Photosystem I reaction center subunit III O... 125 5e-29 sp|P0A401|PSAF_THEEB Photosystem I reaction center subunit III O... 125 6e-29 sp|P0A402|PSAF_SYNEN Photosystem I reaction center subunit III O... 125 6e-29 sp|P51193|PSAF_PORPU Photosystem I reaction center subunit III O... 125 6e-29 sp|P29256|PSAF_SYNY3 Photosystem I reaction center subunit III O... 122 4e-28 sp|P48115|PSAF_CYAPA Photosystem I reaction center subunit III O... 122 5e-28 sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III, ... 121 9e-28 sp|O78457|PSAF_GUITH Photosystem I reaction center subunit III O... 121 1e-27 sp|Q9TLW6|PSAF_CYACA Photosystem I reaction center subunit III O... 116 4e-26 sp|P49483|PSAF_ODOSI Photosystem I reaction center subunit III O... 112 4e-25 sp|P31091|PSAF_ANAVT Photosystem I reaction center subunit III O... 107 1e-23 sp|O31127|PSAF_MASLA Photosystem I reaction center subunit III O... 107 2e-23 sp|P58564|PSAF_ANASP Photosystem I reaction center subunit III O... 107 2e-23 sp|Q7NH05|PSAF_GLOVI Photosystem I reaction center subunit III O... 89 9e-18 sp|Q9X7I4|PSAF_PROMA Photosystem I reaction center subunit III O... 84 2e-16 sp|A6LEJ0|RL4_PARD8 50S ribosomal protein L4 OS=Parabacteroides ... 32 1.3 sp|Q72P44|PHL1_LEPIC Sphingomyelinase C 1 OS=Leptospira interrog... 32 1.3 sp|Q9V189|Y539_PYRAB UPF0103 protein PYRAB05390 OS=Pyrococcus ab... 31 1.7 sp|A6KYJ4|RL4_BACV8 50S ribosomal protein L4 OS=Bacteroides vulg... 31 2.2 sp|Q8A477|RL4_BACTN 50S ribosomal protein L4 OS=Bacteroides thet... 31 2.2 sp|Q7MTL4|RL4_PORGI 50S ribosomal protein L4 OS=Porphyromonas gi... 30 2.8 sp|Q64NK9|RL4_BACFR 50S ribosomal protein L4 OS=Bacteroides frag... 30 2.8 sp|Q5L8B0|RL4_BACFN 50S ribosomal protein L4 OS=Bacteroides frag... 30 2.8 sp|P29321|EPHA8_RAT Ephrin type-A receptor 8 (Fragment) OS=Rattu... 30 2.8
>sp|P12355|PSAF_SPIOL Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1 Length = 231
Score = 143 bits (361), Expect = 2e-34 Identities = 66/88 (75%), Positives = 76/88 (86%) Frame = +2
Query: 2 ADGLPHLIVDGDQAHLGEFVYPGILFLYIAGWIGWVGRSYLIAIKDSKKPAEKEIIIDVP 181 +DGLPHLIV GDQ H GEF+ PGILFLYIAGWIGWVGRSYLIAI+D KKP +KEIIIDVP Sbjct: 142 SDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVP 201
Query: 182 LASRLAWRGFIWPLAAISELRNGKLIED 265 LAS L +RGF WP+AA EL NG+L+++ Sbjct: 202 LASSLLFRGFSWPVAAYRELLNGELVDN 229
>sp|P46486|PSAF_FLATR Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1 Length = 232
Score = 141 bits (356), Expect = 9e-34 Identities = 65/87 (74%), Positives = 75/87 (86%) Frame = +2
Query: 2 ADGLPHLIVDGDQAHLGEFVYPGILFLYIAGWIGWVGRSYLIAIKDSKKPAEKEIIIDVP 181 +DGLPHLIV GDQ H GEF+ PGILFLYIAGWIGWVGRSYLIAI+D KKP +KEIIIDVP Sbjct: 143 SDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVP 202
Query: 182 LASRLAWRGFIWPLAAISELRNGKLIE 262 LA++L +RGF WP+AA E NG+LI+ Sbjct: 203 LATKLLFRGFSWPVAAYREYLNGELID 229
>sp|Q9SHE8|PSAF_ARATH Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1 Length = 221
Score = 141 bits (355), Expect = 1e-33 Identities = 67/86 (77%), Positives = 73/86 (84%) Frame = +2
Query: 2 ADGLPHLIVDGDQAHLGEFVYPGILFLYIAGWIGWVGRSYLIAIKDSKKPAEKEIIIDVP 181 +DGLPHLIV+GDQ H GEF+ PGILFLYIAGWIGWVGRSYLIAI KKPA KEIIIDVP Sbjct: 132 SDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVP 191
Query: 182 LASRLAWRGFIWPLAAISELRNGKLI 259 LASR+ +RGFIWP+AA E NG LI Sbjct: 192 LASRIIFRGFIWPVAAYREFLNGDLI 217
>sp|P13192|PSAF_HORVU Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2 Length = 235
Score = 137 bits (346), Expect = 1e-32 Identities = 65/92 (70%), Positives = 75/92 (81%) Frame = +2
Query: 2 ADGLPHLIVDGDQAHLGEFVYPGILFLYIAGWIGWVGRSYLIAIKDSKKPAEKEIIIDVP 181 +DGLPHLIV GDQ H GEF+ PG+LFLYIAGWIGWVGRSYLIA+ KKPA +EIIIDV Sbjct: 142 SDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVE 201
Query: 182 LASRLAWRGFIWPLAAISELRNGKLIEDAANI 277 LA+R+ RGFIWP+AA EL NG L+ D A+I Sbjct: 202 LAARIIPRGFIWPVAAYRELINGDLVVDDADI 233
>sp|P31083|PSAF_SYNP6 Photosystem I reaction center subunit III OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaF PE=1 SV=2 Length = 159
Score = 132 bits (333), Expect = 4e-31 Identities = 64/97 (65%), Positives = 72/97 (74%) Frame = +2
Query: 2 ADGLPHLIVDGDQAHLGEFVYPGILFLYIAGWIGWVGRSYLIAIKDSKKPAEKEIIIDVP 181 ADGLPHLIVDG H G+F+ P +LFLYIAGWIGWVGRSYL AIK K A KEI+IDVP Sbjct: 63 ADGLPHLIVDGRLDHAGDFIIPSLLFLYIAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVP 122
Query: 182 LASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 292 LA + + GF WPLAA E +GKL+ A ITVSPR Sbjct: 123 LAVKFSLTGFAWPLAAFQEFSSGKLLAKADEITVSPR 159
>sp|Q6B948|PSAF_GRATL Photosystem I reaction center subunit III OS=Gracilaria tenuistipitata var. liui GN=psaF PE=3 SV=1 Length = 187
Score = 129 bits (324), Expect = 4e-30 Identities = 60/96 (62%), Positives = 70/96 (72%) Frame = +2
Query: 5 DGLPHLIVDGDQAHLGEFVYPGILFLYIAGWIGWVGRSYLIAIKDSKKPAEKEIIIDVPL 184 DGLPHLI DG H GEF+ PG+LFLYI GWIGWVGR YL I + KP EKEII+DVPL Sbjct: 92 DGLPHLITDGRWNHAGEFMIPGVLFLYITGWIGWVGRGYLRDISQTTKPTEKEIILDVPL 151
Query: 185 ASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 292 A + GF WPLAAI EL +G+L+ D +I +SPR Sbjct: 152 ALKYCLSGFTWPLAAIKELTSGELVADNKDIPISPR 187
>sp|Q1XDU4|PSAF_PORYE Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1 Length = 181
Score = 125 bits (315), Expect = 5e-29 Identities = 58/96 (60%), Positives = 71/96 (73%) Frame = +2
Query: 5 DGLPHLIVDGDQAHLGEFVYPGILFLYIAGWIGWVGRSYLIAIKDSKKPAEKEIIIDVPL 184 DGLPHLI DG + G+FV+PG+LFLYI GWIGWVGR YL+++ + KP EKEII+DVPL Sbjct: 86 DGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPL 145
Query: 185 ASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 292 A + GF WPLAA E +G+LI +ITVSPR Sbjct: 146 AIKFMSSGFAWPLAAWQEFSSGQLIASNDDITVSPR 181
>sp|P0A401|PSAF_THEEB Photosystem I reaction center subunit III OS=Thermosynechococcus elongatus (strain BP-1) GN=psaF PE=1 SV=1 Length = 164
Score = 125 bits (314), Expect = 6e-29 Identities = 59/96 (61%), Positives = 73/96 (76%) Frame = +2
Query: 5 DGLPHLIVDGDQAHLGEFVYPGILFLYIAGWIGWVGRSYLIAIKDSKKPAEKEIIIDVPL 184 DGLPHL+VDG + G+F+ P +LFLYIAGWIGWVGR+YLIA+++S + EKEIIIDVPL Sbjct: 69 DGLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPL 128
Query: 185 ASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 292 A + GF WPLAA+ EL +G+L ITVSPR Sbjct: 129 AIKCMLTGFAWPLAALKELASGELTAKDNEITVSPR 164
>sp|P0A402|PSAF_SYNEN Photosystem I reaction center subunit III OS=Synechococcus elongatus naegeli GN=psaF PE=1 SV=1 Length = 164
Score = 125 bits (314), Expect = 6e-29 Identities = 59/96 (61%), Positives = 73/96 (76%) Frame = +2
Query: 5 DGLPHLIVDGDQAHLGEFVYPGILFLYIAGWIGWVGRSYLIAIKDSKKPAEKEIIIDVPL 184 DGLPHL+VDG + G+F+ P +LFLYIAGWIGWVGR+YLIA+++S + EKEIIIDVPL Sbjct: 69 DGLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPL 128
Query: 185 ASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 292 A + GF WPLAA+ EL +G+L ITVSPR Sbjct: 129 AIKCMLTGFAWPLAALKELASGELTAKDNEITVSPR 164
>sp|P51193|PSAF_PORPU Photosystem I reaction center subunit III OS=Porphyra purpurea GN=psaF PE=3 SV=1 Length = 185
Score = 125 bits (314), Expect = 6e-29 Identities = 58/96 (60%), Positives = 71/96 (73%) Frame = +2
Query: 5 DGLPHLIVDGDQAHLGEFVYPGILFLYIAGWIGWVGRSYLIAIKDSKKPAEKEIIIDVPL 184 DGLPHLI DG + G+FV+PG+LFLYI GWIGWVGR YL+++ + KP EKEII+DVPL Sbjct: 90 DGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPL 149
Query: 185 ASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 292 A + GF WPLAA E +G+LI +ITVSPR Sbjct: 150 AVKFMSSGFAWPLAAWQEFSSGQLIAPNDDITVSPR 185
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SHP6 |
Definition |
tr|A9SHP6|A9SHP6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
96 |
Score (bit) |
166.0 |
E-value |
7.0e-40 |
Report |
|